NO03G00070, NO03G00070 (gene) Nannochloropsis oceanica

Overview
NameNO03G00070
Unique NameNO03G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3054
Alignment locationchr3:17590..20643 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:17590..20643 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G00070 vs. NCBI_GenBank
Match: EWM29987.1 (hypothetical protein Naga_100276g3 [Nannochloropsis gaditana])

HSP 1 Score: 252.3 bits (643), Expect = 2.500e-63
Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = 0 
Query:  147 ISLTARKKKGGQTEGERTEKPRKAKS-SSGSSKPRLPVFTARIVILGSPSEEWGQGVREGLITEGWMEERVQVLPVPSPEDYPEVKWMAYLREGLKLRNTTFVIAAPGSAAGQVLRFLEKHPLRGSILLGPESTYEGRAWDYKLLRQHCPFFGLIYPMGEGDE 309
            + L+ RKK+ G  +GE+  KP+K KS  +  + PR PVFTARI ILGSPSEEWGQGVRE LI+EGWMEERVQVLP+PSP+ YPE KWMAYLREGLKLRNTTFVIAAPG A GQVLRFLEKHPLRGSILLGPE++ + R+WDYK LRQHCPFFGLIY M EG+E
Sbjct:   27 VVLSYRKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAM-EGEE 188
[Close]
BLAST of NO03G00070 vs. NCBI_GenBank
Match: EWM29986.1 (hypothetical protein Naga_100276g3 [Nannochloropsis gaditana])

HSP 1 Score: 251.1 bits (640), Expect = 5.500e-63
Identity = 121/163 (74.23%), Postives = 137/163 (84.05%), Query Frame = 0 
Query:  147 ISLTARKKKGGQTEGERTEKPRKAKS-SSGSSKPRLPVFTARIVILGSPSEEWGQGVREGLITEGWMEERVQVLPVPSPEDYPEVKWMAYLREGLKLRNTTFVIAAPGSAAGQVLRFLEKHPLRGSILLGPESTYEGRAWDYKLLRQHCPFFGLIYPMGEGDE 309
            ++   RKK+ G  +GE+  KP+K KS  +  + PR PVFTARI ILGSPSEEWGQGVRE LI+EGWMEERVQVLP+PSP+ YPE KWMAYLREGLKLRNTTFVIAAPG A GQVLRFLEKHPLRGSILLGPE++ + R+WDYK LRQHCPFFGLIY M EG+E
Sbjct:   66 VAAWVRKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAM-EGEE 227
The following BLAST results are available for this feature:
BLAST of NO03G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29987.12.500e-6374.85hypothetical protein Naga_100276g3 [Nannochloropsi... [more]
EWM29986.15.500e-6374.23hypothetical protein Naga_100276g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL071nonsL071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR012ncniR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR055ngnoR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005909NSK005909Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00070.1NO03G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G00070.2NO03G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612341gene_10430Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100276g3gene660Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00070.1NO03G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G00070.2NO03G00070.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00070 ID=NO03G00070|Name=NO03G00070|organism=Nannochloropsis oceanica|type=gene|length=3054bp
GTTACGCGGCGTGCGCCTAATCTGCGTATTTTGAGGAGAGAGGGAAGAGA
GAGTGAGACAGGTTTTGCAGGTTGCAGGTTGACGATGTGGCGCTCTGACG
GAGCCTCGGCGGCGGGTGGGGGATGAAGAAAAAAGCAGAGAAGAAAATAA
AGGTTGGAAATTTCCGGCTGTGGGACTCCGCCAGCACCCCCACATGATCC
CAGCGAAATCTATCGCAGGCTGTGTGCTCCCCCAGGGTGCCCTGAACGGC
AGTGACCAGGGAGGGGGCCAAGCTCCTCCTTTCCCCCTTGTGGCTAGCTC
AATCAAGCTAAGGTCAAAGGCTGACATGAACGAGCCAGCGGGCGCACCCG
GACGCGCAAGAAGGCGGGCTCCATATTCTGTGTTGCTGCGGAGTGTGGCT
GGCTTGGCGCTGGATGATGCTTTATAGACAAGAAAGAAGTAGAGGAAGAC
GTGTCCCGTCCCAGCCAGACGGCGCGGCGAATTTGCGCGACGACCAGAAT
GAGAAGTTGGGCCGCGCGACCCCAAACGGTAATTTACACTCTCACACAAC
ATCTACGCACAATAACAGTACTACAATGACAATGCCGCCTGACCGCCCAG
ACAGTACGAGAACACTGCGGAGGAGAATCTTGGTCCTCTCCCTCTCCTTT
CCCCGTCTTCTCCTCCTGCTCTTCCTCCTCACCCCCCTCCCACCATGCGG
AGGCCTCACCTACAGCAGCATCTTAGTACTTAGACACAATCCAAGAAAAG
TCGCAACCAATCCCTCCTGCTTTCTCTTTCCTTTCTTTCCCCCCTGCTTT
TCATCGCGGGCGGCTGGGATCCAGAGCTTGCACAAAAGGAGACGCACTGG
CATCTCGTTGACAGCGCGGTAAGTGCCTCGCTATGTACGTGGGAGCGGTA
GAAACGCGATGAGAGGGCAAGATAAGGGAGAGAAAGGCACTGAATGACAG
TAGAAAGGAGTGTGCAGCTGCGTGCGAAACGTAGCACTTTGTTGGAGGGG
AATAGCGCACGCACGCTGGGGTGACCTAGTAGAGAGGGAGGAGAAGCCGG
GTTCTAAGAGGGATGGTAAGTGGAGCCGTCCCCCCAAAAAATGTGCCTGG
TCGAGTTTTGGGACTTTACCTCGAGAAAAGACGAGGCAAGATGTTGTATT
GAGTGTATTTGTGAGTGGAGAAGGGAATTGACTGGTGGAGGAGCAGACGG
ATGGGTTGGTTACGGTTACGGATGGATTTTGATGTAGGGCGTCGACATGT
CCACGCAGTCATCTCAATCTTCGATTGCAAACATGTGCAAAACAGTAAAA
AGAAAGGCGGTCAGACAGAAGGAGAGCGAACAGAAAAGCCTCGAAAAGgt
gcgtgcattggtagcccgatttccacccttcctctctccctccctcccag
ctacctcgtagactaaatgtctacgttttgtttctgtatctcctccttac
ccccccccacctcccagCCAAGAGCAGCAGTGGCAGCAGCAAGCCTCGCC
TTCCAGTTTTTACGGCCAGAATCGTCATCTTGGGCAGCCCGAGCGAGGAG
TGGGGACAGGGCGTGAGGGAGGGCCTCATCACGGAAGgtaggcgagggag
ggatgaagggagggcgggtccgtgaccaaggagtgttgacagacgcacgg
aaggagatgcttgagtccttacacttggggcctatgtgcacacatacatc
tcaacaagcgcctccactccgccctccccacaccccagGCTGGATGGAGG
AGCGCGTGCAGGTCTTGCCCGTGCCCTCCCCGGAAGATTATCCGGAAGTA
AAGTGGATGGCTTACCTACGgtatgtgtacctattttgtctctccttttt
tccaccctttctccctctcttcttgagggttctagcgatatatcgtcttc
ccatccctctctcacgctctcccatgttccctccctccaacccttcctcc
cttcctctccctcaccccctcctccagTGAGGGTTTAAAGCTTCGCAATA
CCACCTTTGTGATCGCTGCCCCGGGGTCTGCCGCCGGTCAAGTGCTGCGT
TTCCTAGAGAAGCATCCCCTGAGGGGGAGTATCTTACTAGgtcgggaggg
agggagggagggaggaggatggatatttcttactttacatttacctgccg
tttctatttccatttgagactgacagcttgcatcattccggccgtctctc
cctcccttttttcctccctcccttcagGCCCTGAATCCACCTACGAAGGT
CGTGCGTGGGACTACAAGTTGCTGCGACAGCATTGTCCGTTCTTTGGGCT
CATATATCCCATGGGAGAGGGGGATGAGGGgtacgtctttggggagggag
ggagggagggaggggggagggagggaggagggtggctatgtgttacttag
agctggaaggaccccctcggacggaggcgctgaagacagaggtggaggaa
agagcggaggctcacttaggaaactatgtatggagggaagtcgcgtgact
gggagaagacagtaagtaatcagcagagcatatcttttccaagcatattg
tgacaaaggtcaaccatgtctcgcctcctccctgcctctctccttcctct
agATGGGAGCCACCAGCGGACGCGGAGCGTATTCGAGACGGTCTTGGCCT
GGCTCCCTTTCCCTTTGGCATCAGGGCCACCCCAGAAGGACAAGAGATGA
Ggtatggattagaagcgaaggagggaaggaaggacggatgagataaaccg
agattttttgtctcactgccgctaatttccctttcccgcccttcatcttc
ctctctcccaccttcccttttatacatgcaccgcagTGCCGTTGCTGCCC
TTATCCGCGACTGGCAGTTCCTTGAGTCTCTTGGCATGGGACCCATCCAG
CTGGTGGGTGAGGACGAGGAAGAGGAGGAGGAGGCGAAAGCAAAAGCCAA
GGCGACCGGGACAAAAATGGAGGAGTGAGGGGATGATAAGAAGATTGAAG
CCATGCGGGGAAGATTGAACTACGAAAGTATGAAGTATATACCGGTATGT
AAGT
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protein sequence of NO03G00070.1

>NO03G00070.1-protein ID=NO03G00070.1-protein|Name=NO03G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MMLYRQERSRGRRVPSQPDGAANLRDDQNEKLGRATPNGNLHSHTTSTHN
NSTTMTMPPDRPDSTRTLRRRILVLSLSFPRLLLLLFLLTPLPPCGGLTY
SSILVLRHNPRKVATNPSCFLFPFFPPCFSSRAAGIQSLHKRRRTGISLT
ARKKKGGQTEGERTEKPRKAKSSSGSSKPRLPVFTARIVILGSPSEEWGQ
GVREGLITEGWMEERVQVLPVPSPEDYPEVKWMAYLREGLKLRNTTFVIA
APGSAAGQVLRFLEKHPLRGSILLGPESTYEGRAWDYKLLRQHCPFFGLI
YPMGEGDEGWEPPADAERIRDGLGLAPFPFGIRATPEGQEMSAVAALIRD
WQFLESLGMGPIQLVGEDEEEEEEAKAKAKATGTKMEE*
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protein sequence of NO03G00070.2

>NO03G00070.2-protein ID=NO03G00070.2-protein|Name=NO03G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MGWLRLRMDFDVGRRHVHAVISIFDCKHVQNSKKKGGQTEGERTEKPRKA
KSSSGSSKPRLPVFTARIVILGSPSEEWGQGVREGLITEGWMEERVQVLP
VPSPEDYPEVKWMAYLREGLKLRNTTFVIAAPGSAAGQVLRFLEKHPLRG
SILLGPESTYEGRAWDYKLLRQHCPFFGLIYPMGEGDEGWEPPADAERIR
DGLGLAPFPFGIRATPEGQEMSAVAALIRDWQFLESLGMGPIQLVGEDEE
EEEEAKAKAKATGTKMEE*
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Synonyms
Publications