NO03G00070.2, NO03G00070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00070.2
Unique NameNO03G00070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2083
Alignment locationchr3:17590..20643 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:17590..20643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00070.2 vs.
Match: EWM29986.1 (hypothetical protein Naga_100276g3 [Nannochloropsis gaditana])

HSP 1 Score: 249.6 bits (636), Expect = 1.100e-62
Identity = 120/157 (76.43%), Postives = 134/157 (85.35%), Query Frame = 0 
Query:   33 KKKGGQTEGERTEKPRKAKS-SSGSSKPRLPVFTARIVILGSPSEEWGQGVREGLITEGWMEERVQVLPVPSPEDYPEVKWMAYLREGLKLRNTTFVIAAPGSAAGQVLRFLEKHPLRGSILLGPESTYEGRAWDYKLLRQHCPFFGLIYPMGEGDE 189
            KK+ G  +GE+  KP+K KS  +  + PR PVFTARI ILGSPSEEWGQGVRE LI+EGWMEERVQVLP+PSP+ YPE KWMAYLREGLKLRNTTFVIAAPG A GQVLRFLEKHPLRGSILLGPE++ + R+WDYK LRQHCPFFGLIY M EG+E
Sbjct:   72 KKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAM-EGEE 227
The following BLAST results are available for this feature:
BLAST of NO03G00070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29986.11.100e-6276.43hypothetical protein Naga_100276g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00070NO03G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00070.2NO03G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00070.2.cds1NO03G00070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00070.2.cds2NO03G00070.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00070.2.cds3NO03G00070.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00070.2.cds4NO03G00070.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00070.2.cds5NO03G00070.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00070.2.cds6NO03G00070.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00070.2.cds7NO03G00070.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00070.2 ID=NO03G00070.2|Name=NO03G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2083bp
GTTACGCGGCGTGCGCCTAATCTGCGTATTTTGAGGAGAGAGGGAAGAGA
GAGTGAGACAGGTTTTGCAGGTTGCAGGTTGACGATGTGGCGCTCTGACG
GAGCCTCGGCGGCGGGTGGGGGATGAAGAAAAAAGCAGAGAAGAAAATAA
AGGTTGGAAATTTCCGGCTGTGGGACTCCGCCAGCACCCCCACATGATCC
CAGCGAAATCTATCGCAGGCTGTGTGCTCCCCCAGGGTGCCCTGAACGGC
AGTGACCAGGGAGGGGGCCAAGCTCCTCCTTTCCCCCTTGTGGCTAGCTC
AATCAAGCTAAGGTCAAAGGCTGACATGAACGAGCCAGCGGGCGCACCCG
GACGCGCAAGAAGGCGGGCTCCATATTCTGTGTTGCTGCGGAGTGTGGCT
GGCTTGGCGCTGGATGATGCTTTATAGACAAGAAAGAAGTAGAGGAAGAC
GTGTCCCGTCCCAGCCAGACGGCGCGGCGAATTTGCGCGACGACCAGAAT
GAGAAGTTGGGCCGCGCGACCCCAAACGGTAATTTACACTCTCACACAAC
ATCTACGCACAATAACAGTACTACAATGACAATGCCGCCTGACCGCCCAG
ACAGTACGAGAACACTGCGGAGGAGAATCTTGGTCCTCTCCCTCTCCTTT
CCCCGTCTTCTCCTCCTGCTCTTCCTCCTCACCCCCCTCCCACCATGCGG
AGGCCTCACCTACAGCAGCATCTTAGTACTTAGACACAATCCAAGAAAAG
TCGCAACCAATCCCTCCTGCTTTCTCTTTCCTTTCTTTCCCCCCTGCTTT
TCATCGCGGGCGGCTGGGATCCAGAGCTTGCACAAAAGGAGACGCACTGG
CATCTCGTTGACAGCGCGGTAAGTGCCTCGCTATGTACGTGGGAGCGGTA
GAAACGCGATGAGAGGGCAAGATAAGGGAGAGAAAGGCACTGAATGACAG
TAGAAAGGAGTGTGCAGCTGCGTGCGAAACGTAGCACTTTGTTGGAGGGG
AATAGCGCACGCACGCTGGGGTGACCTAGTAGAGAGGGAGGAGAAGCCGG
GTTCTAAGAGGGATGGTAAGTGGAGCCGTCCCCCCAAAAAATGTGCCTGG
TCGAGTTTTGGGACTTTACCTCGAGAAAAGACGAGGCAAGATGTTGTATT
GAGTGTATTTGTGAGTGGAGAAGGGAATTGACTGGTGGAGGAGCAGACGG
ATGGGTTGGTTACGGTTACGGATGGATTTTGATGTAGGGCGTCGACATGT
CCACGCAGTCATCTCAATCTTCGATTGCAAACATGTGCAAAACAGTAAAA
AGAAAGGCGGTCAGACAGAAGGAGAGCGAACAGAAAAGCCTCGAAAAGCC
AAGAGCAGCAGTGGCAGCAGCAAGCCTCGCCTTCCAGTTTTTACGGCCAG
AATCGTCATCTTGGGCAGCCCGAGCGAGGAGTGGGGACAGGGCGTGAGGG
AGGGCCTCATCACGGAAGGCTGGATGGAGGAGCGCGTGCAGGTCTTGCCC
GTGCCCTCCCCGGAAGATTATCCGGAAGTAAAGTGGATGGCTTACCTACG
TGAGGGTTTAAAGCTTCGCAATACCACCTTTGTGATCGCTGCCCCGGGGT
CTGCCGCCGGTCAAGTGCTGCGTTTCCTAGAGAAGCATCCCCTGAGGGGG
AGTATCTTACTAGGCCCTGAATCCACCTACGAAGGTCGTGCGTGGGACTA
CAAGTTGCTGCGACAGCATTGTCCGTTCTTTGGGCTCATATATCCCATGG
GAGAGGGGGATGAGGGATGGGAGCCACCAGCGGACGCGGAGCGTATTCGA
GACGGTCTTGGCCTGGCTCCCTTTCCCTTTGGCATCAGGGCCACCCCAGA
AGGACAAGAGATGAGTGCCGTTGCTGCCCTTATCCGCGACTGGCAGTTCC
TTGAGTCTCTTGGCATGGGACCCATCCAGCTGGTGGGTGAGGACGAGGAA
GAGGAGGAGGAGGCGAAAGCAAAAGCCAAGGCGACCGGGACAAAAATGGA
GGAGTGAGGGGATGATAAGAAGATTGAAGCCATGCGGGGAAGATTGAACT
ACGAAAGTATGAAGTATATACCGGTATGTAAGT
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protein sequence of NO03G00070.2

>NO03G00070.2-protein ID=NO03G00070.2-protein|Name=NO03G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MGWLRLRMDFDVGRRHVHAVISIFDCKHVQNSKKKGGQTEGERTEKPRKA
KSSSGSSKPRLPVFTARIVILGSPSEEWGQGVREGLITEGWMEERVQVLP
VPSPEDYPEVKWMAYLREGLKLRNTTFVIAAPGSAAGQVLRFLEKHPLRG
SILLGPESTYEGRAWDYKLLRQHCPFFGLIYPMGEGDEGWEPPADAERIR
DGLGLAPFPFGIRATPEGQEMSAVAALIRDWQFLESLGMGPIQLVGEDEE
EEEEAKAKAKATGTKMEE*
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mRNA from alignment at chr3:17590..20643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00070.2 ID=NO03G00070.2|Name=NO03G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=3054bp|location=Sequence derived from alignment at chr3:17590..20643+ (Nannochloropsis oceanica)
GTTACGCGGCGTGCGCCTAATCTGCGTATTTTGAGGAGAGAGGGAAGAGA
GAGTGAGACAGGTTTTGCAGGTTGCAGGTTGACGATGTGGCGCTCTGACG
GAGCCTCGGCGGCGGGTGGGGGATGAAGAAAAAAGCAGAGAAGAAAATAA
AGGTTGGAAATTTCCGGCTGTGGGACTCCGCCAGCACCCCCACATGATCC
CAGCGAAATCTATCGCAGGCTGTGTGCTCCCCCAGGGTGCCCTGAACGGC
AGTGACCAGGGAGGGGGCCAAGCTCCTCCTTTCCCCCTTGTGGCTAGCTC
AATCAAGCTAAGGTCAAAGGCTGACATGAACGAGCCAGCGGGCGCACCCG
GACGCGCAAGAAGGCGGGCTCCATATTCTGTGTTGCTGCGGAGTGTGGCT
GGCTTGGCGCTGGATGATGCTTTATAGACAAGAAAGAAGTAGAGGAAGAC
GTGTCCCGTCCCAGCCAGACGGCGCGGCGAATTTGCGCGACGACCAGAAT
GAGAAGTTGGGCCGCGCGACCCCAAACGGTAATTTACACTCTCACACAAC
ATCTACGCACAATAACAGTACTACAATGACAATGCCGCCTGACCGCCCAG
ACAGTACGAGAACACTGCGGAGGAGAATCTTGGTCCTCTCCCTCTCCTTT
CCCCGTCTTCTCCTCCTGCTCTTCCTCCTCACCCCCCTCCCACCATGCGG
AGGCCTCACCTACAGCAGCATCTTAGTACTTAGACACAATCCAAGAAAAG
TCGCAACCAATCCCTCCTGCTTTCTCTTTCCTTTCTTTCCCCCCTGCTTT
TCATCGCGGGCGGCTGGGATCCAGAGCTTGCACAAAAGGAGACGCACTGG
CATCTCGTTGACAGCGCGGTAAGTGCCTCGCTATGTACGTGGGAGCGGTA
GAAACGCGATGAGAGGGCAAGATAAGGGAGAGAAAGGCACTGAATGACAG
TAGAAAGGAGTGTGCAGCTGCGTGCGAAACGTAGCACTTTGTTGGAGGGG
AATAGCGCACGCACGCTGGGGTGACCTAGTAGAGAGGGAGGAGAAGCCGG
GTTCTAAGAGGGATGGTAAGTGGAGCCGTCCCCCCAAAAAATGTGCCTGG
TCGAGTTTTGGGACTTTACCTCGAGAAAAGACGAGGCAAGATGTTGTATT
GAGTGTATTTGTGAGTGGAGAAGGGAATTGACTGGTGGAGGAGCAGACGG
ATGGGTTGGTTACGGTTACGGATGGATTTTGATGTAGGGCGTCGACATGT
CCACGCAGTCATCTCAATCTTCGATTGCAAACATGTGCAAAACAGTAAAA
AGAAAGGCGGTCAGACAGAAGGAGAGCGAACAGAAAAGCCTCGAAAAGGT
GCGTGCATTGGTAGCCCGATTTCCACCCTTCCTCTCTCCCTCCCTCCCAG
CTACCTCGTAGACTAAATGTCTACGTTTTGTTTCTGTATCTCCTCCTTAC
CCCCCCCCACCTCCCAGCCAAGAGCAGCAGTGGCAGCAGCAAGCCTCGCC
TTCCAGTTTTTACGGCCAGAATCGTCATCTTGGGCAGCCCGAGCGAGGAG
TGGGGACAGGGCGTGAGGGAGGGCCTCATCACGGAAGGTAGGCGAGGGAG
GGATGAAGGGAGGGCGGGTCCGTGACCAAGGAGTGTTGACAGACGCACGG
AAGGAGATGCTTGAGTCCTTACACTTGGGGCCTATGTGCACACATACATC
TCAACAAGCGCCTCCACTCCGCCCTCCCCACACCCCAGGCTGGATGGAGG
AGCGCGTGCAGGTCTTGCCCGTGCCCTCCCCGGAAGATTATCCGGAAGTA
AAGTGGATGGCTTACCTACGGTATGTGTACCTATTTTGTCTCTCCTTTTT
TCCACCCTTTCTCCCTCTCTTCTTGAGGGTTCTAGCGATATATCGTCTTC
CCATCCCTCTCTCACGCTCTCCCATGTTCCCTCCCTCCAACCCTTCCTCC
CTTCCTCTCCCTCACCCCCTCCTCCAGTGAGGGTTTAAAGCTTCGCAATA
CCACCTTTGTGATCGCTGCCCCGGGGTCTGCCGCCGGTCAAGTGCTGCGT
TTCCTAGAGAAGCATCCCCTGAGGGGGAGTATCTTACTAGGTCGGGAGGG
AGGGAGGGAGGGAGGAGGATGGATATTTCTTACTTTACATTTACCTGCCG
TTTCTATTTCCATTTGAGACTGACAGCTTGCATCATTCCGGCCGTCTCTC
CCTCCCTTTTTTCCTCCCTCCCTTCAGGCCCTGAATCCACCTACGAAGGT
CGTGCGTGGGACTACAAGTTGCTGCGACAGCATTGTCCGTTCTTTGGGCT
CATATATCCCATGGGAGAGGGGGATGAGGGGTACGTCTTTGGGGAGGGAG
GGAGGGAGGGAGGGGGGAGGGAGGGAGGAGGGTGGCTATGTGTTACTTAG
AGCTGGAAGGACCCCCTCGGACGGAGGCGCTGAAGACAGAGGTGGAGGAA
AGAGCGGAGGCTCACTTAGGAAACTATGTATGGAGGGAAGTCGCGTGACT
GGGAGAAGACAGTAAGTAATCAGCAGAGCATATCTTTTCCAAGCATATTG
TGACAAAGGTCAACCATGTCTCGCCTCCTCCCTGCCTCTCTCCTTCCTCT
AGATGGGAGCCACCAGCGGACGCGGAGCGTATTCGAGACGGTCTTGGCCT
GGCTCCCTTTCCCTTTGGCATCAGGGCCACCCCAGAAGGACAAGAGATGA
GGTATGGATTAGAAGCGAAGGAGGGAAGGAAGGACGGATGAGATAAACCG
AGATTTTTTGTCTCACTGCCGCTAATTTCCCTTTCCCGCCCTTCATCTTC
CTCTCTCCCACCTTCCCTTTTATACATGCACCGCAGTGCCGTTGCTGCCC
TTATCCGCGACTGGCAGTTCCTTGAGTCTCTTGGCATGGGACCCATCCAG
CTGGTGGGTGAGGACGAGGAAGAGGAGGAGGAGGCGAAAGCAAAAGCCAA
GGCGACCGGGACAAAAATGGAGGAGTGAGGGGATGATAAGAAGATTGAAG
CCATGCGGGGAAGATTGAACTACGAAAGTATGAAGTATATACCGGTATGT
AAGT
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Coding sequence (CDS) from alignment at chr3:17590..20643+

>NO03G00070.2 ID=NO03G00070.2|Name=NO03G00070.2|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr3:17590..20643+ (Nannochloropsis oceanica)
ATGGGTTGGTTACGGTTACGGATGGATTTTGATGTAGGGCGTCGACATGT
CCACGCAGTCATCTCAATCTTCGATTGCAAACATGTGCAAAACAGTAAAA
AGAAAGGCGGTCAGACAGAAGGAGAGCGAACAGAAAAGCCTCGAAAAGCC
AAGAGCAGCAGTGGCAGCAGCAAGCCTCGCCTTCCAGTTTTTACGGCCAG
AATCGTCATCTTGGGCAGCCCGAGCGAGGAGTGGGGACAGGGCGTGAGGG
AGGGCCTCATCACGGAAGGCTGGATGGAGGAGCGCGTGCAGGTCTTGCCC
GTGCCCTCCCCGGAAGATTATCCGGAAGTAAAGTGGATGGCTTACCTACG
TGAGGGTTTAAAGCTTCGCAATACCACCTTTGTGATCGCTGCCCCGGGGT
CTGCCGCCGGTCAAGTGCTGCGTTTCCTAGAGAAGCATCCCCTGAGGGGG
AGTATCTTACTAGGCCCTGAATCCACCTACGAAGGTCGTGCGTGGGACTA
CAAGTTGCTGCGACAGCATTGTCCGTTCTTTGGGCTCATATATCCCATGG
GAGAGGGGGATGAGGGATGGGAGCCACCAGCGGACGCGGAGCGTATTCGA
GACGGTCTTGGCCTGGCTCCCTTTCCCTTTGGCATCAGGGCCACCCCAGA
AGGACAAGAGATGAGTGCCGTTGCTGCCCTTATCCGCGACTGGCAGTTCC
TTGAGTCTCTTGGCATGGGACCCATCCAGCTGGTGGGTGAGGACGAGGAA
GAGGAGGAGGAGGCGAAAGCAAAAGCCAAGGCGACCGGGACAAAAATGGA
GGAGTGA
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Synonyms
Publications