NO02G06020, NO02G06020 (gene) Nannochloropsis oceanica

Overview
NameNO02G06020
Unique NameNO02G06020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr2:1612323..1613288 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1612323..1613288 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018958Knr4/Smi1-like_dom
Homology
[Close]
BLAST of NO02G06020 vs. NCBI_GenBank
Match: EWM30080.1 (hypothetical protein Naga_100173g7 [Nannochloropsis gaditana])

HSP 1 Score: 268.5 bits (685), Expect = 2.700e-68
Identity = 157/338 (46.45%), Postives = 211/338 (62.43%), Query Frame = 0 
Query:    1 MTRHLHVQLCGKRQQTTFVSTSFLSSASGLHLLPPLRLSDATPTVALSAAS------SPFLHALATTPFWMDVTLSYLLLEDWLLLESLSHSLGPHIASADAWRDIDLGPAFLSSLPPDLSTPQVIQRIRREIIDRQKSLRRMRKAWAGLKKFADRDVAWTFNPGLEEDMVRRLEDKMGCVLPPDLRASFLIHDGQGFLSNSGIIVGGGRLLSLSEVVAEACR--QDREEWKGREGEENRSNAKVLAPPALRFGE------EGVEGSRARMVPVSEGARGRSLCVALPRR---RRRAGEETEKGNLGEEDDVGCVYIVTALSCQKMARSWGEYMGCLR 322
            MTR +HV L  + +Q T+V  S  S      LLPPLRL   T +  +++A       S FL A   T FW+D+TLS+L    WL+LE     +  HI  A+AWR +DLGP +L SLP  L+   ++Q IR E I+R+ SL R+R+AWA +++FA    +WT N G+EED + R E  +GC LPPDLRASFLIHDGQ +++  G+++GGGRLLSL +VV +ACR  Q + +   R   E    A V +    + GE      EG EG   RMVP+SEGARGRS+C+ALP+R   +R  G   E+    +E  +G VYIVTALSC+K+A SWG+Y+G LR
Sbjct:    1 MTRLVHVHLFSEGRQATYVLCS--SMPYYRSLLPPLRLDYVTSSTHMASAGTAQLSFSAFLSAAVRTTFWLDITLSFLPPSSWLILECACKLIFSHIKHANAWRCVDLGPIYLHSLPSCLTPADIVQNIRFEFIERKASLWRLRRAWATIEQFAPAGFSWTLNKGIEEDALGRWEYALGCSLPPDLRASFLIHDGQSYMAQPGMMLGGGRLLSLEDVVIQACRMEQSQSDQDRRCMIEVAEGADVQSAKTGKGGEDEGDRNEGEEG--WRMVPLSEGARGRSVCIALPKRWKKKRVRGRRKERETAEDEGLLGGVYIVTALSCRKLADSWGQYLGTLR 334
[Close]
BLAST of NO02G06020 vs. NCBI_GenBank
Match: CBJ25458.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.6 bits (166), Expect = 4.200e-8
Identity = 62/190 (32.63%), Postives = 87/190 (45.79%), Query Frame = 0 
Query:   34 PPLRLSDATPTVALSAASSPFLHALATTPFWMDVTLSYLLLEDWLLLESLSHSLGPHIASADAWRDIDLGPAFLSSLPPDLSTPQVIQRIRREIIDRQKSLRRMRKAWAGLKKFADRDVAWTFNPGLEEDMVRRLEDKMGCVLPPDLRASFLIHDGQ---GFLSNSGIIVGGGRLLSLSE----VVAEAC 217
            P   L    P +A S A+SP    L       ++ L YL  E WL +E    +    +AS+  W D  +G         D     V  R RR       +L R+  A+  L++FA R  +  FNPG         E + G + P + RASFL+ DGQ   G+L + G+I GG  LLSL+E    ++ EAC
Sbjct:   31 PTTTLKLTLPALARSEAASPAASFLRLNRDPANLLLGYLAPESWLEVEQACRAGRVAVASSGCWTDKGVG---------DGQGKAVYVRQRR-------ALHRVSGAFQDLRRFA-RSPSSVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVI-GGFELLSLAESVDLMLEEAC 202
The following BLAST results are available for this feature:
BLAST of NO02G06020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30080.12.700e-6846.45hypothetical protein Naga_100173g7 [Nannochloropsi... [more]
CBJ25458.14.200e-832.63expressed unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007303NSK007303Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06020.1NO02G06020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636420gene_1197Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100173g7gene577Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06020.1NO02G06020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06020 ID=NO02G06020|Name=NO02G06020|organism=Nannochloropsis oceanica|type=gene|length=966bp
ATGACGCGCCATTTACACGTCCAGCTTTGCGGAAAGCGGCAGCAAACCAC
CTTTGTCTCAACTTCATTCCTTTCCAGTGCATCAGGCCTCCACCTTCTTC
CCCCCCTCCGCCTCAGTGATGCTACGCCCACCGTAGCGCTATCAGCAGCC
TCCAGTCCCTTTCTCCATGCCCTGGCCACAACGCCCTTCTGGATGGACGT
TACCCTCTCGTATCTCCTGCTAGAAGACTGGCTCCTCCTGGAATCTCTCT
CTCACTCCTTGGGACCTCACATTGCAAGTGCCGATGCCTGGCGAGACATC
GACCTCGGCCCGGCCTTCCTCTCCTCCCTCCCTCCCGATCTGTCCACCCC
TCAAGTCATTCAAAGAATCCGCAGGGAGATAATCGACCGCCAAAAGTCCC
TTCGACGTATGCGGAAGGCGTGGGCAGGCTTGAAGAAGTTTGCTGACCGG
GACGTGGCCTGGACGTTCAATCCCGGTCTCGAGGAAGATATGGTGCGACG
CTTGGAAGACAAAATGGGGTGCGTCCTCCCTCCAGATTTGCGGGCCTCAT
TTTTGATCCATGACGGGCAGGGTTTTCTGTCCAACTCCGGAATCATTGTA
GGAGGAGGGAGGTTATTGAGTCTGTCGGAGGTAGTAGCGGAGGCTTGTCG
ACAGGACAGGGAAGAATGGAAGGGTAGAGAAGGAGAAGAGAATAGGTCGA
ATGCAAAAGTGCTGGCACCACCTGCATTGAGATTTGGGGAGGAAGGCGTG
GAGGGAAGCAGGGCAAGAATGGTTCCAGTGTCGGAGGGCGCGAGAGGGCG
CTCCCTCTGTGTAGCTTTGCCGAGGCGACGCCGACGGGCTGGCGAAGAGA
CAGAGAAAGGAAATTTAGGAGAAGAGGATGATGTGGGGTGTGTGTATATC
GTTACGGCGTTGTCGTGTCAGAAAATGGCACGAAGTTGGGGAGAGTACAT
GGGATGTTTGAGGTAG
back to top

protein sequence of NO02G06020.1

>NO02G06020.1-protein ID=NO02G06020.1-protein|Name=NO02G06020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MTRHLHVQLCGKRQQTTFVSTSFLSSASGLHLLPPLRLSDATPTVALSAA
SSPFLHALATTPFWMDVTLSYLLLEDWLLLESLSHSLGPHIASADAWRDI
DLGPAFLSSLPPDLSTPQVIQRIRREIIDRQKSLRRMRKAWAGLKKFADR
DVAWTFNPGLEEDMVRRLEDKMGCVLPPDLRASFLIHDGQGFLSNSGIIV
GGGRLLSLSEVVAEACRQDREEWKGREGEENRSNAKVLAPPALRFGEEGV
EGSRARMVPVSEGARGRSLCVALPRRRRRAGEETEKGNLGEEDDVGCVYI
VTALSCQKMARSWGEYMGCLR*
back to top
Synonyms
Publications