NO02G06020.1, NO02G06020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G06020.1
Unique NameNO02G06020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr2:1612323..1613288 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1612323..1613288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G06020.1 vs.
Match: EWM30080.1 (hypothetical protein Naga_100173g7 [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 2.100e-68
Identity = 156/338 (46.15%), Postives = 211/338 (62.43%), Query Frame = 0 
Query:    1 MTRHLHVQLCGKRQQTTFVSTSFLSSASGLHLLPPLRLSDATPTVALSAAS------SPFLHALATTPFWMDVTLSYLLLEDWLLLESLSHSLGPHIASADAWRDIDLGPAFLSSLPPDLSTPQVIQRIRREIIDRQKSLRRMRKAWAGLKKFADRDVAWTFNPGLEEDMVRRLEDKMGCVLPPDLRASFLIHDGQGFLSNSGIIVGGGRLLSLSEVVAEACR--QDREEWKGREGEENRSNAKVLAPPALRFGE------EGVEGSRARMVPVSEGARGRSLCVALPRR---RRRAGEETEKGNLGEEDDVGCVYIVTALSCQKMARSWGEYMGCLR 322
            MTR +HV L  + +Q T+V  S +     L  LPPLRL   T +  +++A       S FL A   T FW+D+TLS+L    WL+LE     +  HI  A+AWR +DLGP +L SLP  L+   ++Q IR E I+R+ SL R+R+AWA +++FA    +WT N G+EED + R E  +GC LPPDLRASFLIHDGQ +++  G+++GGGRLLSL +VV +ACR  Q + +   R   E    A V +    + GE      EG EG R  MVP+SEGARGRS+C+ALP+R   +R  G   E+    +E  +G VYIVTALSC+K+A SWG+Y+G LR
Sbjct:    1 MTRLVHVHLFSEGRQATYVLCSSMPYYRSL--LPPLRLDYVTSSTHMASAGTAQLSFSAFLSAAVRTTFWLDITLSFLPPSSWLILECACKLIFSHIKHANAWRCVDLGPIYLHSLPSCLTPADIVQNIRFEFIERKASLWRLRRAWATIEQFAPAGFSWTLNKGIEEDALGRWEYALGCSLPPDLRASFLIHDGQSYMAQPGMMLGGGRLLSLEDVVIQACRMEQSQSDQDRRCMIEVAEGADVQSAKTGKGGEDEGDRNEGEEGWR--MVPLSEGARGRSVCIALPKRWKKKRVRGRRKERETAEDEGLLGGVYIVTALSCRKLADSWGQYLGTLR 334
The following BLAST results are available for this feature:
BLAST of NO02G06020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30080.12.100e-6846.15hypothetical protein Naga_100173g7 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G06020NO02G06020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G06020.1NO02G06020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G06020.1.cds1NO02G06020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G06020.1 ID=NO02G06020.1|Name=NO02G06020.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGACGCGCCATTTACACGTCCAGCTTTGCGGAAAGCGGCAGCAAACCAC
CTTTGTCTCAACTTCATTCCTTTCCAGTGCATCAGGCCTCCACCTTCTTC
CCCCCCTCCGCCTCAGTGATGCTACGCCCACCGTAGCGCTATCAGCAGCC
TCCAGTCCCTTTCTCCATGCCCTGGCCACAACGCCCTTCTGGATGGACGT
TACCCTCTCGTATCTCCTGCTAGAAGACTGGCTCCTCCTGGAATCTCTCT
CTCACTCCTTGGGACCTCACATTGCAAGTGCCGATGCCTGGCGAGACATC
GACCTCGGCCCGGCCTTCCTCTCCTCCCTCCCTCCCGATCTGTCCACCCC
TCAAGTCATTCAAAGAATCCGCAGGGAGATAATCGACCGCCAAAAGTCCC
TTCGACGTATGCGGAAGGCGTGGGCAGGCTTGAAGAAGTTTGCTGACCGG
GACGTGGCCTGGACGTTCAATCCCGGTCTCGAGGAAGATATGGTGCGACG
CTTGGAAGACAAAATGGGGTGCGTCCTCCCTCCAGATTTGCGGGCCTCAT
TTTTGATCCATGACGGGCAGGGTTTTCTGTCCAACTCCGGAATCATTGTA
GGAGGAGGGAGGTTATTGAGTCTGTCGGAGGTAGTAGCGGAGGCTTGTCG
ACAGGACAGGGAAGAATGGAAGGGTAGAGAAGGAGAAGAGAATAGGTCGA
ATGCAAAAGTGCTGGCACCACCTGCATTGAGATTTGGGGAGGAAGGCGTG
GAGGGAAGCAGGGCAAGAATGGTTCCAGTGTCGGAGGGCGCGAGAGGGCG
CTCCCTCTGTGTAGCTTTGCCGAGGCGACGCCGACGGGCTGGCGAAGAGA
CAGAGAAAGGAAATTTAGGAGAAGAGGATGATGTGGGGTGTGTGTATATC
GTTACGGCGTTGTCGTGTCAGAAAATGGCACGAAGTTGGGGAGAGTACAT
GGGATGTTTGAGGTAG
back to top

protein sequence of NO02G06020.1

>NO02G06020.1-protein ID=NO02G06020.1-protein|Name=NO02G06020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MTRHLHVQLCGKRQQTTFVSTSFLSSASGLHLLPPLRLSDATPTVALSAA
SSPFLHALATTPFWMDVTLSYLLLEDWLLLESLSHSLGPHIASADAWRDI
DLGPAFLSSLPPDLSTPQVIQRIRREIIDRQKSLRRMRKAWAGLKKFADR
DVAWTFNPGLEEDMVRRLEDKMGCVLPPDLRASFLIHDGQGFLSNSGIIV
GGGRLLSLSEVVAEACRQDREEWKGREGEENRSNAKVLAPPALRFGEEGV
EGSRARMVPVSEGARGRSLCVALPRRRRRAGEETEKGNLGEEDDVGCVYI
VTALSCQKMARSWGEYMGCLR*
back to top

mRNA from alignment at chr2:1612323..1613288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G06020.1 ID=NO02G06020.1|Name=NO02G06020.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at chr2:1612323..1613288+ (Nannochloropsis oceanica)
ATGACGCGCCATTTACACGTCCAGCTTTGCGGAAAGCGGCAGCAAACCAC
CTTTGTCTCAACTTCATTCCTTTCCAGTGCATCAGGCCTCCACCTTCTTC
CCCCCCTCCGCCTCAGTGATGCTACGCCCACCGTAGCGCTATCAGCAGCC
TCCAGTCCCTTTCTCCATGCCCTGGCCACAACGCCCTTCTGGATGGACGT
TACCCTCTCGTATCTCCTGCTAGAAGACTGGCTCCTCCTGGAATCTCTCT
CTCACTCCTTGGGACCTCACATTGCAAGTGCCGATGCCTGGCGAGACATC
GACCTCGGCCCGGCCTTCCTCTCCTCCCTCCCTCCCGATCTGTCCACCCC
TCAAGTCATTCAAAGAATCCGCAGGGAGATAATCGACCGCCAAAAGTCCC
TTCGACGTATGCGGAAGGCGTGGGCAGGCTTGAAGAAGTTTGCTGACCGG
GACGTGGCCTGGACGTTCAATCCCGGTCTCGAGGAAGATATGGTGCGACG
CTTGGAAGACAAAATGGGGTGCGTCCTCCCTCCAGATTTGCGGGCCTCAT
TTTTGATCCATGACGGGCAGGGTTTTCTGTCCAACTCCGGAATCATTGTA
GGAGGAGGGAGGTTATTGAGTCTGTCGGAGGTAGTAGCGGAGGCTTGTCG
ACAGGACAGGGAAGAATGGAAGGGTAGAGAAGGAGAAGAGAATAGGTCGA
ATGCAAAAGTGCTGGCACCACCTGCATTGAGATTTGGGGAGGAAGGCGTG
GAGGGAAGCAGGGCAAGAATGGTTCCAGTGTCGGAGGGCGCGAGAGGGCG
CTCCCTCTGTGTAGCTTTGCCGAGGCGACGCCGACGGGCTGGCGAAGAGA
CAGAGAAAGGAAATTTAGGAGAAGAGGATGATGTGGGGTGTGTGTATATC
GTTACGGCGTTGTCGTGTCAGAAAATGGCACGAAGTTGGGGAGAGTACAT
GGGATGTTTGAGGTAG
back to top

Coding sequence (CDS) from alignment at chr2:1612323..1613288+

>NO02G06020.1 ID=NO02G06020.1|Name=NO02G06020.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr2:1612323..1613288+ (Nannochloropsis oceanica)
ATGACGCGCCATTTACACGTCCAGCTTTGCGGAAAGCGGCAGCAAACCAC
CTTTGTCTCAACTTCATTCCTTTCCAGTGCATCAGGCCTCCACCTTCTTC
CCCCCCTCCGCCTCAGTGATGCTACGCCCACCGTAGCGCTATCAGCAGCC
TCCAGTCCCTTTCTCCATGCCCTGGCCACAACGCCCTTCTGGATGGACGT
TACCCTCTCGTATCTCCTGCTAGAAGACTGGCTCCTCCTGGAATCTCTCT
CTCACTCCTTGGGACCTCACATTGCAAGTGCCGATGCCTGGCGAGACATC
GACCTCGGCCCGGCCTTCCTCTCCTCCCTCCCTCCCGATCTGTCCACCCC
TCAAGTCATTCAAAGAATCCGCAGGGAGATAATCGACCGCCAAAAGTCCC
TTCGACGTATGCGGAAGGCGTGGGCAGGCTTGAAGAAGTTTGCTGACCGG
GACGTGGCCTGGACGTTCAATCCCGGTCTCGAGGAAGATATGGTGCGACG
CTTGGAAGACAAAATGGGGTGCGTCCTCCCTCCAGATTTGCGGGCCTCAT
TTTTGATCCATGACGGGCAGGGTTTTCTGTCCAACTCCGGAATCATTGTA
GGAGGAGGGAGGTTATTGAGTCTGTCGGAGGTAGTAGCGGAGGCTTGTCG
ACAGGACAGGGAAGAATGGAAGGGTAGAGAAGGAGAAGAGAATAGGTCGA
ATGCAAAAGTGCTGGCACCACCTGCATTGAGATTTGGGGAGGAAGGCGTG
GAGGGAAGCAGGGCAAGAATGGTTCCAGTGTCGGAGGGCGCGAGAGGGCG
CTCCCTCTGTGTAGCTTTGCCGAGGCGACGCCGACGGGCTGGCGAAGAGA
CAGAGAAAGGAAATTTAGGAGAAGAGGATGATGTGGGGTGTGTGTATATC
GTTACGGCGTTGTCGTGTCAGAAAATGGCACGAAGTTGGGGAGAGTACAT
GGGATGTTTGAGGTAG
back to top
Synonyms
Publications