NO02G05580, NO02G05580 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G05580
Unique Name	NO02G05580
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2531
Alignment location	chr2:1482806..1485336 +

Link to JBrowse

Properties


Property Name	Value
Description	Uroporphyrinogen decarboxylase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1482806..1485336 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006779	porphyrin-containing compound biosynthetic process
GO:0009987	cellular process
GO:0009058	biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004853	uroporphyrinogen decarboxylase activity
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR038071	UROD/MetE-like_sf
IPR000257	Uroporphyrinogen_deCOase

Homology

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BLAST of NO02G05580 vs. NCBI_GenBank
Match: ADI46567.1 (uroporphyrinogen decarboxylase, partial [Vaucheria litorea])

HSP 1 Score: 528.9 bits (1361), Expect = 1.400e-146
Identity = 252/342 (73.68%), Postives = 296/342 (86.55%), Query Frame = 0

Query:   50 EEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            ++PLLLRAARGE VER PVWMMRQAGRHM  YR+LVKKYPTFRERSEI +VSTEISLQP++ Y TDGVILFSDILTPLPGMGV+F IEEKTGPK+ P+RTWE+V  M  +D  + CPFV QTL DL+KEVG+ ATVLGFVG PYTLATY+VEG SS+EYLEIKKMMF EP LL  ML+ +AD+IG+Y  +QIESGAQVIQ+FDSWAGHL+P DYDVFAAPYQ++VI+KIK+ HP VPII+YINKSGALLERM+Q+G D++SLDWTVT+EE R+R+G+++G+QGNLDPA L+AP EVIKERTE+ILR   G  HVMNLGHGIEATT EE A FF+ T K +R+
Sbjct:    1 KDPLLLRAARGEAVERVPVWMMRQAGRHMQEYRDLVKKYPTFRERSEIHEVSTEISLQPYRRYGTDGVILFSDILTPLPGMGVDFKIEEKTGPKLVPMRTWESVNAMHTIDSEKACPFVGQTLRDLKKEVGSNATVLGFVGCPYTLATYMVEGGSSREYLEIKKMMFTEPELLHAMLAKIADSIGDYGIYQIESGAQVIQVFDSWAGHLSPKDYDVFAAPYQKKVIQKIKSSHPEVPIIIYINKSGALLERMSQSGADIISLDWTVTIEEARKRIGNDIGIQGNLDPAALFAPNEVIKERTEEILRACGGRNHVMNLGHGIEATTSEEKAEFFINTVKNFRF 342

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BLAST of NO02G05580 vs. NCBI_GenBank
Match: ADI46568.1 (uroporphyrinogen decarboxylase, partial [Elysia chlorotica])

HSP 1 Score: 528.5 bits (1360), Expect = 1.800e-146
Identity = 251/342 (73.39%), Postives = 296/342 (86.55%), Query Frame = 0

Query:   50 EEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            ++PLLLRAARGE VER PVWMMRQAGRHM  YR+L+KKYPTFRERSEI +VSTEISLQP++ Y TDGVILFSDILTPLPGMGV+F IEEKTGPK+ P+RTWE+V  M  +D  + CPFV QTL DL+KEVG+ ATVLGFVG PYTLATY+VEG SS+EYLEIKKMMF EP LL  ML+ +AD+IG+Y  +QIESGAQVIQ+FDSWAGHL+P DYDVFAAPYQ++VI+KIK+ HP VPII+YINKSGALLERM+Q+G D++SLDWTVT+EE R+R+G+++G+QGNLDPA L+AP EVIKERTE+ILR   G  HVMNLGHGIEATT EE A FF+ T K +R+
Sbjct:    1 KDPLLLRAARGEAVERVPVWMMRQAGRHMQEYRDLIKKYPTFRERSEIHEVSTEISLQPYRRYGTDGVILFSDILTPLPGMGVDFKIEEKTGPKLVPMRTWESVNAMHTIDSEKACPFVGQTLRDLKKEVGSNATVLGFVGCPYTLATYMVEGGSSREYLEIKKMMFTEPELLHAMLAKIADSIGDYGIYQIESGAQVIQVFDSWAGHLSPKDYDVFAAPYQKKVIQKIKSSHPEVPIIIYINKSGALLERMSQSGADIISLDWTVTIEEARKRIGNDIGIQGNLDPAALFAPNEVIKERTEEILRACGGRNHVMNLGHGIEATTSEEKAEFFINTVKNFRF 342

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: CBN74275.1 (Uroporphyrinogen decarboxylase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 527.3 bits (1357), Expect = 4.000e-146
Identity = 258/379 (68.07%), Postives = 308/379 (81.27%), Query Frame = 0

Query:   13 AAVLLAPKAAQAFNMRQPMKMSATATKAGATSEDKKVEEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            AA    P + +      P  +SA  T+  A    K   +PLLLRAARGEKVER PVWMMRQAGRH+  YR+LV+K+PTFRERSE P++STEISLQPW+ YKTDGVILFSDILTPLPGMG++FTIEEK GPKI P+RTW+++K+M  +D  + CPFV QTL +LR  VGNEATVLGFVG PYTLATY+VEG +SKEYLEIKKM F EP LL  ML  LAD+IG+YA +Q++SGAQVIQ+FDSWAGHL+P DYD FAAPYQR VIEKIKA HP VP+I+YINKSGALLERMA +GVD+VSLDWTVT+ E R+R+G ++G+QGNLDPAIL+     IKERTE+ILR+G G  HVMNLGHGI+A TPE+NAAFF++T K +R+
Sbjct:   45 AAAASTPSSVRGKRRITPTAVSAQPTEK-AVDAGKDTTDPLLLRAARGEKVERVPVWMMRQAGRHIKEYRDLVQKHPTFRERSETPELSTEISLQPWRNYKTDGVILFSDILTPLPGMGIDFTIEEKAGPKIPPMRTWDSMKKMHPIDPEKACPFVGQTLNELRGVVGNEATVLGFVGCPYTLATYMVEGKTSKEYLEIKKMAFLEPKLLHAMLKSLADSIGDYANYQVDSGAQVIQVFDSWAGHLSPKDYDTFAAPYQRMVIEKIKAVHPEVPVIIYINKSGALLERMATSGVDIVSLDWTVTVPEARKRIGDDIGIQGNLDPAILHGDHATIKERTEEILRDGGGRNHVMNLGHGIDAGTPEDNAAFFIDTVKNFRF 422

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: ADD60150.1 (uroporphyrinogen decarboxylase, partial [Elysia chlorotica])

HSP 1 Score: 525.4 bits (1352), Expect = 1.500e-145
Identity = 249/342 (72.81%), Postives = 295/342 (86.26%), Query Frame = 0

Query:   50 EEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            ++PLLLRAARGE VER PVWMMRQAGRHM  YR+L+KKYPTFRERSEI +VSTEISLQP++ Y TDGVILFSDILTPLPGMGV+F IEEKTGPK+ P+RTWE+V  M  +D  + CPFV QTL DL+KEVG+ ATVLGFVG PYTLATY+VEG SS+EYLEIKKMMF EP LL  ML+ +AD+IG+Y  +QIESGAQVIQ+FDSWAGHL+P DYD+FAAPYQ++VI+KIK+ HP VPII+YINKSGALLERM+Q+G D++SLDWTV +EE R+R+G+++G+QGNLDPA L+AP EVIKERTE+ILR   G  HVMNLGHGIEATT EE A FF+ T K +R+
Sbjct:    1 KDPLLLRAARGEAVERIPVWMMRQAGRHMQEYRDLIKKYPTFRERSEIHEVSTEISLQPYRRYGTDGVILFSDILTPLPGMGVDFKIEEKTGPKLVPMRTWESVNAMHTIDSEKACPFVGQTLRDLKKEVGSNATVLGFVGCPYTLATYMVEGGSSREYLEIKKMMFTEPELLHAMLAKIADSIGDYGIYQIESGAQVIQVFDSWAGHLSPKDYDIFAAPYQKKVIQKIKSSHPEVPIIIYINKSGALLERMSQSGADIISLDWTVMIEEARKRIGNDIGIQGNLDPAALFAPNEVIKERTEEILRACGGRNHVMNLGHGIEATTSEEKAEFFINTVKNFRF 342

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: ABD51942.1 (chloroplast uroporphyrinogen decarboxylase, partial [Guillardia theta])

HSP 1 Score: 503.8 bits (1296), Expect = 4.700e-139
Identity = 252/386 (65.28%), Postives = 306/386 (79.27%), Query Frame = 0

Query:    7 ASVLLLAAVLLAPKAAQAFNMRQPMKMSATATKAGATSEDKKVEEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRL-MDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            +S  + + + + PK A+       ++ + +AT + +T    K+E+PLLLRAARGEKVE  PVWMMRQAGRHM  YRELVKKYPTFRERSEIP+V+TEISLQPW+AY  DG ILFSDILTPLPGMGVEF I+E +GPK+KP+RT E +  M++  D   + PFV QTL +LRK VGN ATVLGFVGLP+TLATYLVEG +S EYLEIKKMM+  P+LL  ML  LA+NIG YA FQIE+GAQVIQIFDSWAG L+P DYD+FA PYQ+ V+  IK KHP VPII+YI KSGA +ERMA TGVD+VSLDWTVT++E RRR+G ++G+QGNLDPAILY P+ +IKERTE IL+  KG  H+MNLGHGIEATTP+ N  FFV+T  A+++
Sbjct:   26 SSAFVGSGLTVTPKDAR-------LRTAVSATASRSTPLGLKMEDPLLLRAARGEKVEMTPVWMMRQAGRHMQEYRELVKKYPTFRERSEIPEVATEISLQPWEAYGVDGCILFSDILTPLPGMGVEFDIKETSGPKLKPLRTKEQIDTMKICSDWSTSMPFVKQTLGELRKRVGNSATVLGFVGLPFTLATYLVEGGTSSEYLEIKKMMYYNPSLLTAMLENLAENIGNYANFQIEAGAQVIQIFDSWAGSLSPEDYDLFAFPYQKMVVNAIKKKHPDVPIIIYIAKSGAHVERMADTGVDIVSLDWTVTIDEARRRIGRDIGLQGNLDPAILYGPEHIIKERTESILKMAKGRHHIMNLGHGIEATTPQPNVKFFVDTVHAFKH 404

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: XP_005826697.1 (hypothetical protein GUITHDRAFT_154354 [Guillardia theta CCMP2712] >EKX39717.1 hypothetical protein GUITHDRAFT_154354 [Guillardia theta CCMP2712])

HSP 1 Score: 503.8 bits (1296), Expect = 4.700e-139
Identity = 252/386 (65.28%), Postives = 306/386 (79.27%), Query Frame = 0

Query:    7 ASVLLLAAVLLAPKAAQAFNMRQPMKMSATATKAGATSEDKKVEEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRL-MDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            +S  + + + + PK A+       ++ + +AT + +T    K+E+PLLLRAARGEKVE  PVWMMRQAGRHM  YRELVKKYPTFRERSEIP+V+TEISLQPW+AY  DG ILFSDILTPLPGMGVEF I+E +GPK+KP+RT E +  M++  D   + PFV QTL +LRK VGN ATVLGFVGLP+TLATYLVEG +S EYLEIKKMM+  P+LL  ML  LA+NIG YA FQIE+GAQVIQIFDSWAG L+P DYD+FA PYQ+ V+  IK KHP VPII+YI KSGA +ERMA TGVD+VSLDWTVT++E RRR+G ++G+QGNLDPAILY P+ +IKERTE IL+  KG  H+MNLGHGIEATTP+ N  FFV+T  A+++
Sbjct:   21 SSAFVGSGLTVTPKDAR-------LRTAVSATASRSTPLGLKMEDPLLLRAARGEKVEMTPVWMMRQAGRHMQEYRELVKKYPTFRERSEIPEVATEISLQPWEAYGVDGCILFSDILTPLPGMGVEFDIKETSGPKLKPLRTKEQIDTMKICSDWSTSMPFVKQTLGELRKRVGNSATVLGFVGLPFTLATYLVEGGTSSEYLEIKKMMYYNPSLLTAMLENLAENIGNYANFQIEAGAQVIQIFDSWAGSLSPEDYDLFAFPYQKMVVNAIKKKHPDVPIIIYIAKSGAHVERMADTGVDIVSLDWTVTIDEARRRIGRDIGLQGNLDPAILYGPEHIIKERTESILKMAKGRHHIMNLGHGIEATTPQPNVKFFVDTVHAFKH 399

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: EWM30174.1 (uroporphyrinogen decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 485.7 bits (1249), Expect = 1.300e-133
Identity = 230/253 (90.91%), Postives = 246/253 (97.23%), Query Frame = 0

Query:  139 KTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            +TGPKIKPIRTWEAVKQM LMDCM+TCPFVHQTL+DLRKEVGN+ATVLGFVGLPYTLATY+VEG SSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQI++GAQVIQ+FDSWAGHL+P DYD+FAAPYQRQVIEKIKAKHP+VPII+YINKSGALLERMAQ+G DMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKER EQILREGKG+KHVMNLGHGIEATTPEENA FF++T KAWRY
Sbjct:   33 QTGPKIKPIRTWEAVKQMHLMDCMQTCPFVHQTLSDLRKEVGNQATVLGFVGLPYTLATYIVEGQSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIDAGAQVIQVFDSWAGHLSPADYDIFAAPYQRQVIEKIKAKHPTVPIIIYINKSGALLERMAQSGADMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERAEQILREGKGFKHVMNLGHGIEATTPEENAKFFIDTVKAWRY 285

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: XP_002178653.1 (uroporphyrinogen decarboxylase [Phaeodactylum tricornutum CCAP 1055/1] >EEC50318.1 uroporphyrinogen decarboxylase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 473.4 bits (1217), Expect = 6.800e-130
Identity = 234/381 (61.42%), Postives = 292/381 (76.64%), Query Frame = 0

Query:   21 AAQAFNMRQPMKMSATA-TKAGATSEDKKVEEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRR---------LGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            +A+  + R P   S+ A T + A    K  ++PLL+RAARGEK ER PVWMMRQAGRH+A YR+L KKYPTFRERSEIP+V+ E+SLQPW+ Y+TDG ILFSDILTPLPG+G EFTI+EK GP ++P+R+++ +K+M  MD  ++ PFV + L  LR+EVG E  VLGFVG PYTLATY+VEG +SKEYLEIKKM   EP LL  +L  LADNIG+YA FQIE+GAQ+IQIFDSWAGHL+P DY+ FAAPYQ+Q+++KIK K+P VP ++YI  SGAL+ERMA TGVD+VSLDWTV M +GR R         L    GVQGNLDPA+L+A  +VI+ER  +IL++     HVMNLGHGIEA TPEENA  F+ET + +R+
Sbjct:   27 SAKQQSFRLPSSASSAADTTSSANVAQKSTQDPLLIRAARGEKTERTPVWMMRQAGRHIAEYRDLCKKYPTFRERSEIPEVAVEVSLQPWRNYQTDGCILFSDILTPLPGIGCEFTIDEKVGPLMEPMRSYDDIKKMHPMDPYKSTPFVAEALKALRQEVGPETAVLGFVGCPYTLATYIVEGKTSKEYLEIKKMALNEPDLLHAILQQLADNIGDYALFQIENGAQLIQIFDSWAGHLSPRDYNTFAAPYQKQILDKIKEKYPDVPTVIYIKHSGALIERMAATGVDVVSLDWTVDMADGRDRIEAGRKSAGLEGRGGVQGNLDPAVLFANHDVIEERAIEILKKAGSVGHVMNLGHGIEAATPEENAHHFIETVRGYRH 407

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: EJK66251.1 (hypothetical protein THAOC_12840 [Thalassiosira oceanica])

HSP 1 Score: 466.8 bits (1200), Expect = 6.400e-128
Identity = 238/392 (60.71%), Postives = 289/392 (73.72%), Query Frame = 0

Query:   10 LLLAAVLLAPKAAQAFNM-RQPMKMSATATKAGATSEDKKVEEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRR---------LGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            LL A + L+  AA AF+   +   M  T T A     D     PLL+RAARGEK ER PVWMMRQAGRH+  YR+L KK+PTFRERSEIP+V+ E+SLQPW+ Y+TDG ILFSDILTPLPGMGVEF I+EK GP +KP+RTWE V++M L+D     PFV + L  LR+EV  E  VLGFVG PYTLATYLVEG +SKEYLEIKKM F EP LL  +L  LA++I EYA FQIE+GAQ+IQIFDSWAGHL+P DYD FAAPYQ+ +++++K ++P VP ++YI  SGAL+ERMA TGVD+VSLDWTV M EGR R         L    GVQGNLDP +L+     IK+R E+I+R+     HVMNLGHGIEA TPEENAA+F+ET + +R+
Sbjct:    3 LLAALLALSAPAAHAFSAPAKAEPMPQTNTDASGAQID-----PLLIRAARGEKTERVPVWMMRQAGRHIKEYRDLCKKHPTFRERSEIPEVAVEVSLQPWRNYQTDGCILFSDILTPLPGMGVEFDIDEKVGPVVKPMRTWEDVEKMHLIDPSAAAPFVAEALRTLREEVTPETAVLGFVGCPYTLATYLVEGKTSKEYLEIKKMAFTEPKLLHAILKNLAESIAEYALFQIENGAQLIQIFDSWAGHLSPRDYDEFAAPYQKMILDRVKERYPDVPTVVYIKHSGALIERMAATGVDVVSLDWTVDMAEGRERIENARKKAGLEGRGGVQGNLDPGVLFGDFATIKDRAEEIMRKAGPTGHVMNLGHGIEAATPEENAAYFIETVRNFRH 389

[Close]

BLAST of NO02G05580 vs. NCBI_GenBank
Match: GAX15457.1 (uroporphyrinogen decarboxylase [Fistulifera solaris])

HSP 1 Score: 464.9 bits (1195), Expect = 2.400e-127
Identity = 228/358 (63.69%), Postives = 277/358 (77.37%), Query Frame = 0

Query:   44 SEDKKVEEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRR---------LGSEMGVQGNLDPAILYAPK-EVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            ++ KK ++PLL+RAARGEKVER PVWMMRQAGRH+  YR+L KKYPTFRERSEIP+V+ E+SLQPW+ Y+TDG ILFSDILTPLPG+G EF I+EK GP + PIR+++  K+M  +D   + PFV + L  LR+ VG E  VLGFVG PYTLATY+VEG +SKEYLEIKKM   EP LL  +L  LADNIG+YA +QIESGAQ+IQIFDSWAGHL+P DYD FAAPYQ+Q+++KIKA +P +P + YI  SGAL+ER+A TGVD+VSLDWTV M EGR R         L    GVQGNLDPA+L     +VIKERT +IL++     HVMNLGHGIEA TPEENA FF+ET + +R+
Sbjct:  295 ADGKKTQDPLLIRAARGEKVERTPVWMMRQAGRHIKEYRDLCKKYPTFRERSEIPEVAVEVSLQPWRNYQTDGCILFSDILTPLPGIGCEFVIDEKVGPIMTPIRSYDEAKKMHKLDPTVSTPFVAEALQALREAVGPETAVLGFVGCPYTLATYIVEGKTSKEYLEIKKMAMTEPKLLHTILQTLADNIGDYALYQIESGAQLIQIFDSWAGHLSPRDYDEFAAPYQKQILDKIKANYPDIPTVTYIKHSGALVERIAGTGVDVVSLDWTVDMAEGRDRVAAGRKAAGLSGRGGVQGNLDPAVLLCDNHDVIKERTHEILKKAGPTGHVMNLGHGIEAITPEENARFFIETVRNYRH 652

The following BLAST results are available for this feature:

BLAST of NO02G05580 vs. NCBI_GenBank

BLAST of NO02G05580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
ADI46567.1	1.400e-146	73.68	uroporphyrinogen decarboxylase, partial [Vaucheria...	[more]
ADI46568.1	1.800e-146	73.39	uroporphyrinogen decarboxylase, partial [Elysia ch...	[more]
CBN74275.1	4.000e-146	68.07	Uroporphyrinogen decarboxylase, chloroplast precur...	[more]
ADD60150.1	1.500e-145	72.81	uroporphyrinogen decarboxylase, partial [Elysia ch...	[more]
ABD51942.1	4.700e-139	65.28	chloroplast uroporphyrinogen decarboxylase, partia...	[more]
XP_005826697.1	4.700e-139	65.28	hypothetical protein GUITHDRAFT_154354 [Guillardia...	[more]
EWM30174.1	1.300e-133	90.91	uroporphyrinogen decarboxylase [Nannochloropsis ga...	[more]
XP_002178653.1	6.800e-130	61.42	uroporphyrinogen decarboxylase [Phaeodactylum tric...	[more]
EJK66251.1	6.400e-128	60.71	hypothetical protein THAOC_12840 [Thalassiosira oc...	[more]
GAX15457.1	2.400e-127	63.69	uroporphyrinogen decarboxylase [Fistulifera solari...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL018	nonsL018	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR003	ngnoR003	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007197	NSK007197	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G05580.1	NO02G05580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575512	gene_1145	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
uroD	gene496	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G05580.1	NO02G05580.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G05580 ID=NO02G05580|Name=NO02G05580|organism=Nannochloropsis oceanica|type=gene|length=2531bp
ACAGCCTCCCATCCCCAAAACACGACGATGCAACTTGTTGGACGTGCCTC
GGTGTTGCTCCTGGCGGCCGTCCTGTTGGCCCCGAAGGCGGCCCAGGCAT
TTAATATGCGGCAACCCATGAAAATGTCAGCCACGGCCACAAAAGCAGGT
GCTACCTCGGAAGACAAGAAAGTGGAGGAGCCCTTGCTGCTGCGGGCAGC
TCGAGGAGAGgtgagttttatagcggagggcttgaggtcgatatacgaag
ctcggactgcaacccttcgatcctcggatatctgtgtgggtatggaatgt
tgcatgatggtaaatgtatggaccatgcatttgttgcgcaggcttggtgc
gtcagctggccctggcattaagccatgcatgtactccctgcctggctcgc
ctctctatgacccatccgatcattcctgcctccgtgccagaacaaggacc
tgccttcgccctttaccaacaatatcgtaccctcgctcacttgacctcta
tggacataccgtcattaatattccgtctgctttttcctccctccctccct
ccctccctccctccctccctccctcccttcctccctccccaccatcacag
AAAGTCGAACGCCCCCCCGTATGGATGATGCGGCAAGCCGGCCGGCACAT
GGCTGCCTACCGGGAGCTGGTAAAAAAATACCCTACCTTCAGAGAGCGTT
CCGAGATCCCGGATGTGTCCACAGAGATTAGCTTGCAGCCCTGGCAGGCG
TACAAGACTGACGGGGTCATCTTGTTCAGTGACATACTCACGCCCCTGCC
TGGGATGGGGGTAGAGTTCACGATTGAGGAGAAGgtatgtaggtggaagg
agatgtaagctgatgcatgtatacaccttctgctatgctgtcctgtcgtc
aattgcagtcgtgtgcgtctctttcaaattgcacacgcttgcttattcta
cccctcgcccccatcccttcctccctccctccctcctctagACCGGCCCC
AAGATCAAGCCCATCCGCACCTGGGAGGCGGTAAAGCAAATGCGCTTGAT
GGACTGCATGGAGACATGCCCATTCGTGCACCAGACGCTGACGGACCTAC
GGAAGGAGGTGGGGAACGAGGCCACGGTGCTGGGCTTCGTGGGGTTGCCC
TACACGTTGGCCACGTATCTGGTGGAGGGTTCCAGTTCGAAGGAGTACTT
GGAGATCAAGAAGATGATGTTTCAGGAGCCGGCGCTGTTGCAGCAGATGC
TGAGTGTGCTGGCCGACAACATCGgtgcgtggggagggacggagggacgg
atggacggagggacgaaagggaggaaggagggcacgactgtcttcattct
taataccagcataacccactcatccccttctctttccttccctccctccc
tccctcattccctctccagGCGAATACGCGTGCTTTCAGATCGAGAGCGG
CGCCCAGGTAATCCAAATCTTCGACTCATGGGCCGGTCACCTCGCGCCCT
TGGACTATGACGTGTTCGCCGCCCCCTACCAACGCCAAGTGATTGAAAAG
ATCAAGGCCAAGCACCCGTCGGTACCCATCATTATGTACATCAACAAGAG
CGGAGCCCTGCTGGAGCGCATGGCGCAAACGGGTGTGGACATGGTGTCGT
TAGATTGGACCGTTACCATGGAAGAGGGGCGGCGACGCCTGGGGTCGGAA
ATGGGGGTGCAAGGGAATTTGGATCCTGCCATTCTATACGCACCTAAGGA
GGTGATCAAGGAGAGGACGGAGCAGATTTTGAGGGAGGGAAAAGGTTACA
AGCATGTTATGAATCTCGGGCATGGCATTGAAGCGACCACGCCCGAGGAG
AACGCGGCGTTTTTTGTGGAGACGTGCAAGGCGTGGCGGTATTAGGGTAG
GAAGAGGAGAGATGGAGGGAGGGAGAGAGGGAGGGAGAGAGGGCGGGAGA
GAGAGAGAGAGAGGGAGGGAAGTAGGGAAGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGAAGGAATGCATGGAAAAGTGAAGATCACTCCC
TGCCGGTGTGATGATTAGGACGCACAAGAGATGGAGAAGAGAGACCAGAG
AGAGGAAAGAGATAAGAAGCCCTAAAAAAGTAGACAACAAAAACAGAAGA
AAGGGATCTCATTACCTCCTTCCCGCCCTCAGTAGGTGACAGTGTAGTTT
CGGTTTGGTTTACACCCCCCCCCTCCCCTCCCCCTTCTCCTTCCCCTTCT
TTCTTTTCAAGCCCTTCCCTTCCTCGTCCCCTCTCACCATTGGCGACACC
GACCGACGTAAGGATCGAGACGTAAAGAAGAAAATCTATGAAGAATCCGC
ACGATTCCGACTCGGCCTCTTTGGGTTTCCACAGCCAGGTATCTCTGTTG
TGCTTCATTTTATCAATCGCTCAAATCATTTCCTCATTGTGAATCAGTCT
GATTTCCTCAGGCGCATATCACCCCTCCTCCTTCCTGTCAGTCCCCTCCC
CTCGCCTTCCTCCTCCTCCTCCTCCTCCCCC

protein sequence of NO02G05580.1

>NO02G05580.1-protein ID=NO02G05580.1-protein|Name=NO02G05580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MQLVGRASVLLLAAVLLAPKAAQAFNMRQPMKMSATATKAGATSEDKKVE
EPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDV
STEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTW
EAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLV
EGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQI
FDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLER
MAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERT
EQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY*

Synonyms

Publications