NO02G05580.1, NO02G05580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05580.1
Unique NameNO02G05580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr2:1482806..1485336 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1482806..1485336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05580.1 vs.
Match: ADI46567.1 (uroporphyrinogen decarboxylase, partial [Vaucheria litorea])

HSP 1 Score: 528.9 bits (1361), Expect = 1.400e-146
Identity = 252/342 (73.68%), Postives = 296/342 (86.55%), Query Frame = 0 
Query:   50 EEPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDVSTEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTWEAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLVEGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQIFDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLERMAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERTEQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY 392
            ++PLLLRAARGE VER PVWMMRQAGRHM  YR+LVKKYPTFRERSEI +VSTEISLQP++ Y TDGVILFSDILTPLPGMGV+F IEEKTGPK+ P+RTWE+V  M  +D  + CPFV QTL DL+KEVG+ ATVLGFVG PYTLATY+VEG SS+EYLEIKKMMF EP LL  ML+ +AD+IG+Y  +QIESGAQVIQ+FDSWAGHL+P DYDVFAAPYQ++VI+KIK+ HP VPII+YINKSGALLERM+Q+G D++SLDWTVT+EE R+R+G+++G+QGNLDPA L+AP EVIKERTE+ILR   G  HVMNLGHGIEATT EE A FF+ T K +R+
Sbjct:    1 KDPLLLRAARGEAVERVPVWMMRQAGRHMQEYRDLVKKYPTFRERSEIHEVSTEISLQPYRRYGTDGVILFSDILTPLPGMGVDFKIEEKTGPKLVPMRTWESVNAMHTIDSEKACPFVGQTLRDLKKEVGSNATVLGFVGCPYTLATYMVEGGSSREYLEIKKMMFTEPELLHAMLAKIADSIGDYGIYQIESGAQVIQVFDSWAGHLSPKDYDVFAAPYQKKVIQKIKSSHPEVPIIIYINKSGALLERMSQSGADIISLDWTVTIEEARKRIGNDIGIQGNLDPAALFAPNEVIKERTEEILRACGGRNHVMNLGHGIEATTSEEKAEFFINTVKNFRF 342
The following BLAST results are available for this feature:
BLAST of NO02G05580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ADI46567.11.400e-14673.68uroporphyrinogen decarboxylase, partial [Vaucheria... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05580NO02G05580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05580.1NO02G05580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05580.1.cds1NO02G05580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05580.1.cds2NO02G05580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05580.1.cds3NO02G05580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05580.1.cds4NO02G05580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05580.1 ID=NO02G05580.1|Name=NO02G05580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
ACAGCCTCCCATCCCCAAAACACGACGATGCAACTTGTTGGACGTGCCTC
GGTGTTGCTCCTGGCGGCCGTCCTGTTGGCCCCGAAGGCGGCCCAGGCAT
TTAATATGCGGCAACCCATGAAAATGTCAGCCACGGCCACAAAAGCAGGT
GCTACCTCGGAAGACAAGAAAGTGGAGGAGCCCTTGCTGCTGCGGGCAGC
TCGAGGAGAGAAAGTCGAACGCCCCCCCGTATGGATGATGCGGCAAGCCG
GCCGGCACATGGCTGCCTACCGGGAGCTGGTAAAAAAATACCCTACCTTC
AGAGAGCGTTCCGAGATCCCGGATGTGTCCACAGAGATTAGCTTGCAGCC
CTGGCAGGCGTACAAGACTGACGGGGTCATCTTGTTCAGTGACATACTCA
CGCCCCTGCCTGGGATGGGGGTAGAGTTCACGATTGAGGAGAAGACCGGC
CCCAAGATCAAGCCCATCCGCACCTGGGAGGCGGTAAAGCAAATGCGCTT
GATGGACTGCATGGAGACATGCCCATTCGTGCACCAGACGCTGACGGACC
TACGGAAGGAGGTGGGGAACGAGGCCACGGTGCTGGGCTTCGTGGGGTTG
CCCTACACGTTGGCCACGTATCTGGTGGAGGGTTCCAGTTCGAAGGAGTA
CTTGGAGATCAAGAAGATGATGTTTCAGGAGCCGGCGCTGTTGCAGCAGA
TGCTGAGTGTGCTGGCCGACAACATCGGCGAATACGCGTGCTTTCAGATC
GAGAGCGGCGCCCAGGTAATCCAAATCTTCGACTCATGGGCCGGTCACCT
CGCGCCCTTGGACTATGACGTGTTCGCCGCCCCCTACCAACGCCAAGTGA
TTGAAAAGATCAAGGCCAAGCACCCGTCGGTACCCATCATTATGTACATC
AACAAGAGCGGAGCCCTGCTGGAGCGCATGGCGCAAACGGGTGTGGACAT
GGTGTCGTTAGATTGGACCGTTACCATGGAAGAGGGGCGGCGACGCCTGG
GGTCGGAAATGGGGGTGCAAGGGAATTTGGATCCTGCCATTCTATACGCA
CCTAAGGAGGTGATCAAGGAGAGGACGGAGCAGATTTTGAGGGAGGGAAA
AGGTTACAAGCATGTTATGAATCTCGGGCATGGCATTGAAGCGACCACGC
CCGAGGAGAACGCGGCGTTTTTTGTGGAGACGTGCAAGGCGTGGCGGTAT
TAGGGTAGGAAGAGGAGAGATGGAGGGAGGGAGAGAGGGAGGGAGAGAGG
GCGGGAGAGAGAGAGAGAGAGGGAGGGAAGTAGGGAAGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGAAGGAATGCATGGAAAAGTGAAGA
TCACTCCCTGCCGGTGTGATGATTAGGACGCACAAGAGATGGAGAAGAGA
GACCAGAGAGAGGAAAGAGATAAGAAGCCCTAAAAAAGTAGACAACAAAA
ACAGAAGAAAGGGATCTCATTACCTCCTTCCCGCCCTCAGTAGGTGACAG
TGTAGTTTCGGTTTGGTTTACACCCCCCCCCTCCCCTCCCCCTTCTCCTT
CCCCTTCTTTCTTTTCAAGCCCTTCCCTTCCTCGTCCCCTCTCACCATTG
GCGACACCGACCGACGTAAGGATCGAGACGTAAAGAAGAAAATCTATGAA
GAATCCGCACGATTCCGACTCGGCCTCTTTGGGTTTCCACAGCCAGGTAT
CTCTGTTGTGCTTCATTTTATCAATCGCTCAAATCATTTCCTCATTGTGA
ATCAGTCTGATTTCCTCAGGCGCATATCACCCCTCCTCCTTCCTGTCAGT
CCCCTCCCCTCGCCTTCCTCCTCCTCCTCCTCCTCCCCC
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protein sequence of NO02G05580.1

>NO02G05580.1-protein ID=NO02G05580.1-protein|Name=NO02G05580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MQLVGRASVLLLAAVLLAPKAAQAFNMRQPMKMSATATKAGATSEDKKVE
EPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDV
STEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTW
EAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLV
EGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQI
FDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLER
MAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERT
EQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY*
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mRNA from alignment at chr2:1482806..1485336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05580.1 ID=NO02G05580.1|Name=NO02G05580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2531bp|location=Sequence derived from alignment at chr2:1482806..1485336+ (Nannochloropsis oceanica)
ACAGCCTCCCATCCCCAAAACACGACGATGCAACTTGTTGGACGTGCCTC
GGTGTTGCTCCTGGCGGCCGTCCTGTTGGCCCCGAAGGCGGCCCAGGCAT
TTAATATGCGGCAACCCATGAAAATGTCAGCCACGGCCACAAAAGCAGGT
GCTACCTCGGAAGACAAGAAAGTGGAGGAGCCCTTGCTGCTGCGGGCAGC
TCGAGGAGAGGTGAGTTTTATAGCGGAGGGCTTGAGGTCGATATACGAAG
CTCGGACTGCAACCCTTCGATCCTCGGATATCTGTGTGGGTATGGAATGT
TGCATGATGGTAAATGTATGGACCATGCATTTGTTGCGCAGGCTTGGTGC
GTCAGCTGGCCCTGGCATTAAGCCATGCATGTACTCCCTGCCTGGCTCGC
CTCTCTATGACCCATCCGATCATTCCTGCCTCCGTGCCAGAACAAGGACC
TGCCTTCGCCCTTTACCAACAATATCGTACCCTCGCTCACTTGACCTCTA
TGGACATACCGTCATTAATATTCCGTCTGCTTTTTCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCACCATCACAG
AAAGTCGAACGCCCCCCCGTATGGATGATGCGGCAAGCCGGCCGGCACAT
GGCTGCCTACCGGGAGCTGGTAAAAAAATACCCTACCTTCAGAGAGCGTT
CCGAGATCCCGGATGTGTCCACAGAGATTAGCTTGCAGCCCTGGCAGGCG
TACAAGACTGACGGGGTCATCTTGTTCAGTGACATACTCACGCCCCTGCC
TGGGATGGGGGTAGAGTTCACGATTGAGGAGAAGGTATGTAGGTGGAAGG
AGATGTAAGCTGATGCATGTATACACCTTCTGCTATGCTGTCCTGTCGTC
AATTGCAGTCGTGTGCGTCTCTTTCAAATTGCACACGCTTGCTTATTCTA
CCCCTCGCCCCCATCCCTTCCTCCCTCCCTCCCTCCTCTAGACCGGCCCC
AAGATCAAGCCCATCCGCACCTGGGAGGCGGTAAAGCAAATGCGCTTGAT
GGACTGCATGGAGACATGCCCATTCGTGCACCAGACGCTGACGGACCTAC
GGAAGGAGGTGGGGAACGAGGCCACGGTGCTGGGCTTCGTGGGGTTGCCC
TACACGTTGGCCACGTATCTGGTGGAGGGTTCCAGTTCGAAGGAGTACTT
GGAGATCAAGAAGATGATGTTTCAGGAGCCGGCGCTGTTGCAGCAGATGC
TGAGTGTGCTGGCCGACAACATCGGTGCGTGGGGAGGGACGGAGGGACGG
ATGGACGGAGGGACGAAAGGGAGGAAGGAGGGCACGACTGTCTTCATTCT
TAATACCAGCATAACCCACTCATCCCCTTCTCTTTCCTTCCCTCCCTCCC
TCCCTCATTCCCTCTCCAGGCGAATACGCGTGCTTTCAGATCGAGAGCGG
CGCCCAGGTAATCCAAATCTTCGACTCATGGGCCGGTCACCTCGCGCCCT
TGGACTATGACGTGTTCGCCGCCCCCTACCAACGCCAAGTGATTGAAAAG
ATCAAGGCCAAGCACCCGTCGGTACCCATCATTATGTACATCAACAAGAG
CGGAGCCCTGCTGGAGCGCATGGCGCAAACGGGTGTGGACATGGTGTCGT
TAGATTGGACCGTTACCATGGAAGAGGGGCGGCGACGCCTGGGGTCGGAA
ATGGGGGTGCAAGGGAATTTGGATCCTGCCATTCTATACGCACCTAAGGA
GGTGATCAAGGAGAGGACGGAGCAGATTTTGAGGGAGGGAAAAGGTTACA
AGCATGTTATGAATCTCGGGCATGGCATTGAAGCGACCACGCCCGAGGAG
AACGCGGCGTTTTTTGTGGAGACGTGCAAGGCGTGGCGGTATTAGGGTAG
GAAGAGGAGAGATGGAGGGAGGGAGAGAGGGAGGGAGAGAGGGCGGGAGA
GAGAGAGAGAGAGGGAGGGAAGTAGGGAAGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGAAGGAATGCATGGAAAAGTGAAGATCACTCCC
TGCCGGTGTGATGATTAGGACGCACAAGAGATGGAGAAGAGAGACCAGAG
AGAGGAAAGAGATAAGAAGCCCTAAAAAAGTAGACAACAAAAACAGAAGA
AAGGGATCTCATTACCTCCTTCCCGCCCTCAGTAGGTGACAGTGTAGTTT
CGGTTTGGTTTACACCCCCCCCCTCCCCTCCCCCTTCTCCTTCCCCTTCT
TTCTTTTCAAGCCCTTCCCTTCCTCGTCCCCTCTCACCATTGGCGACACC
GACCGACGTAAGGATCGAGACGTAAAGAAGAAAATCTATGAAGAATCCGC
ACGATTCCGACTCGGCCTCTTTGGGTTTCCACAGCCAGGTATCTCTGTTG
TGCTTCATTTTATCAATCGCTCAAATCATTTCCTCATTGTGAATCAGTCT
GATTTCCTCAGGCGCATATCACCCCTCCTCCTTCCTGTCAGTCCCCTCCC
CTCGCCTTCCTCCTCCTCCTCCTCCTCCCCC
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Coding sequence (CDS) from alignment at chr2:1482806..1485336+

>NO02G05580.1 ID=NO02G05580.1|Name=NO02G05580.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr2:1482806..1485336+ (Nannochloropsis oceanica)
ATGCAACTTGTTGGACGTGCCTCGGTGTTGCTCCTGGCGGCCGTCCTGTT
GGCCCCGAAGGCGGCCCAGGCATTTAATATGCGGCAACCCATGAAAATGT
CAGCCACGGCCACAAAAGCAGGTGCTACCTCGGAAGACAAGAAAGTGGAG
GAGCCCTTGCTGCTGCGGGCAGCTCGAGGAGAGAAAGTCGAACGCCCCCC
CGTATGGATGATGCGGCAAGCCGGCCGGCACATGGCTGCCTACCGGGAGC
TGGTAAAAAAATACCCTACCTTCAGAGAGCGTTCCGAGATCCCGGATGTG
TCCACAGAGATTAGCTTGCAGCCCTGGCAGGCGTACAAGACTGACGGGGT
CATCTTGTTCAGTGACATACTCACGCCCCTGCCTGGGATGGGGGTAGAGT
TCACGATTGAGGAGAAGACCGGCCCCAAGATCAAGCCCATCCGCACCTGG
GAGGCGGTAAAGCAAATGCGCTTGATGGACTGCATGGAGACATGCCCATT
CGTGCACCAGACGCTGACGGACCTACGGAAGGAGGTGGGGAACGAGGCCA
CGGTGCTGGGCTTCGTGGGGTTGCCCTACACGTTGGCCACGTATCTGGTG
GAGGGTTCCAGTTCGAAGGAGTACTTGGAGATCAAGAAGATGATGTTTCA
GGAGCCGGCGCTGTTGCAGCAGATGCTGAGTGTGCTGGCCGACAACATCG
GCGAATACGCGTGCTTTCAGATCGAGAGCGGCGCCCAGGTAATCCAAATC
TTCGACTCATGGGCCGGTCACCTCGCGCCCTTGGACTATGACGTGTTCGC
CGCCCCCTACCAACGCCAAGTGATTGAAAAGATCAAGGCCAAGCACCCGT
CGGTACCCATCATTATGTACATCAACAAGAGCGGAGCCCTGCTGGAGCGC
ATGGCGCAAACGGGTGTGGACATGGTGTCGTTAGATTGGACCGTTACCAT
GGAAGAGGGGCGGCGACGCCTGGGGTCGGAAATGGGGGTGCAAGGGAATT
TGGATCCTGCCATTCTATACGCACCTAAGGAGGTGATCAAGGAGAGGACG
GAGCAGATTTTGAGGGAGGGAAAAGGTTACAAGCATGTTATGAATCTCGG
GCATGGCATTGAAGCGACCACGCCCGAGGAGAACGCGGCGTTTTTTGTGG
AGACGTGCAAGGCGTGGCGGTATTAG
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Synonyms
Publications