NO02G05560, NO02G05560 (gene) Nannochloropsis oceanica

Overview
NameNO02G05560
Unique NameNO02G05560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1481
Alignment locationchr2:1479520..1481000 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1479520..1481000 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007198NSK007198Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05560.1NO02G05560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05560.1NO02G05560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05560 ID=NO02G05560|Name=NO02G05560|organism=Nannochloropsis oceanica|type=gene|length=1481bp
ATGGAGCGGCTTCGGCGGGAAGGAAGGGAGTGTGCCTTGTTGAAGTTTTA
TGGGGAGACGGCCGTGGCCACCCGCGAGGAGGCATTGAAGGACGCCAAGC
GACACAGAGCCCATTTGCTGGCTGTATTGGAGGCCGTTGCTCGGCATGGG
AAGGAGGAAGCGGATGGGAAGTTGGAGGGGCAGAAGGAGGGACTGCGGGA
GGTCATGCTGGAGGAGATGGTGGgtgagctgaaggagtgccaagaggctt
tgagagtcgctgaagctgaggacgagggaggggggcgggagggagggaag
gaaggaggggtggtggtaccggcacggacggtcatgacgagacacacgag
gaaaatcaagGGGGGAGATGGCTTGTTGGAGGAGGAGGAGGGAGGGAGGG
GGGAGGGAGGGGGGGAGGGAATGGGAATTTATCGGCTGCAGCAGCGGCGA
ACCTGCTGATGAAAAGAAAGAGGGGACCAGGGGGATTGAGCTCGATCTTC
CAACGGACGTTGGAGGAGGAGGAAGCGGAGGAGGACTTGCATGCTATCAC
TGCAGACGACCGATTTGCCCTGGAAGAGATGGAGGCGGTGGGAGTAGGGA
GGGAGGCGCCTCTTCCTGTTGTGGAGGTACGAATCGAGAAAAGAGGAGTC
TATTATGGCGATATGCACTTTGTTAAGAATGACGCCCTGGTGGTGACCAA
TGCCCGGATTCGTGATTCGTTTCCGGCGATATTGCAGAGTTTTAATCAGA
CGGAAATTTTCCTGAAACTGCTGGGGAAGAAGGCCATGACGGGGGACACG
CTGGCGAGCAGTCGGAAGAGGGTAGGGGTGGAGGAATTGCGGGAAGGTAA
ATTCTTGTTGGCGTTCGCTCATGCGGATTCGCCGTCGTCGAGCCCTTCGT
TGAGTGGAGGGCGGTCGCCTTTGGACTCGTTGGGATCGTCGGTGGGAGGG
GGGAGGGTGCGGTGGGTTGATGAGGAGGGAGGGAGAGGAGGGAGGAGGGG
GGGAAGGTAGTGAAGATGATTTGAAGGAGGAAGAGGAGGAGGAGGGACAG
CGGACGGTGGTGGGTTTGTTTATGTGTAGAGTCGGAGGAGGAGGGGGTGG
GGGATGTAGGAGGTAAGGGCAAGATCCATCAATGCTCTTTGCGAGGGATT
GCCGTCAAATGTTATGAAGAGAGAAGGGGAGATGGCGAGAAGGGAAGTGA
GAGAGGAAGGACACATGCCAAGAAAAGGGAGAGGAAGAGAAAGGAGAGGG
AGAAGGAAAAAAAAATCAGGAGAATAATAGTAAGGAGAAAAAAAAAGAAC
AAGAAGAATAATTAGAATAAGAGAAAGAAGAGGAGGGGGAGGTAAAAGAA
GAAGAGGTAGAAGTAGGAAAAGAAGAAGAGGAAGAAGATGGGAAGAAGAA
CAGGAAGAAGGGAAGGAGGAGAATCACCAACCAAAAGCAATTCATAAAAG
AAGCAAAAACCTCCTTTTTACACAAAAATAT
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protein sequence of NO02G05560.1

>NO02G05560.1-protein ID=NO02G05560.1-protein|Name=NO02G05560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MERLRREGRECALLKFYGETAVATREEALKDAKRHRAHLLAVLEAVARHG
KEEADGKLEGQKEGLREVMLEEMVGGRWLVGGGGGREGGGRGGGNGNLSA
AAAANLLMKRKRGPGGLSSIFQRTLEEEEAEEDLHAITADDRFALEEMEA
VGVGREAPLPVVEVRIEKRGVYYGDMHFVKNDALVVTNARIRDSFPAILQ
SFNQTEIFLKLLGKKAMTGDTLASSRKRVGVEELREGKFLLAFAHADSPS
SSPSLSGGRSPLDSLGSSVGGGRVRWVDEEGGRGGRRGGR*
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Synonyms
Publications