NO02G05560.1, NO02G05560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05560.1
Unique NameNO02G05560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1344
Alignment locationchr2:1479520..1481000 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1479520..1481000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05560NO02G05560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05560.1NO02G05560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05560.1.cds1NO02G05560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05560.1.cds2NO02G05560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05560.1 ID=NO02G05560.1|Name=NO02G05560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ATGGAGCGGCTTCGGCGGGAAGGAAGGGAGTGTGCCTTGTTGAAGTTTTA
TGGGGAGACGGCCGTGGCCACCCGCGAGGAGGCATTGAAGGACGCCAAGC
GACACAGAGCCCATTTGCTGGCTGTATTGGAGGCCGTTGCTCGGCATGGG
AAGGAGGAAGCGGATGGGAAGTTGGAGGGGCAGAAGGAGGGACTGCGGGA
GGTCATGCTGGAGGAGATGGTGGGGGGGAGATGGCTTGTTGGAGGAGGAG
GAGGGAGGGAGGGGGGAGGGAGGGGGGGAGGGAATGGGAATTTATCGGCT
GCAGCAGCGGCGAACCTGCTGATGAAAAGAAAGAGGGGACCAGGGGGATT
GAGCTCGATCTTCCAACGGACGTTGGAGGAGGAGGAAGCGGAGGAGGACT
TGCATGCTATCACTGCAGACGACCGATTTGCCCTGGAAGAGATGGAGGCG
GTGGGAGTAGGGAGGGAGGCGCCTCTTCCTGTTGTGGAGGTACGAATCGA
GAAAAGAGGAGTCTATTATGGCGATATGCACTTTGTTAAGAATGACGCCC
TGGTGGTGACCAATGCCCGGATTCGTGATTCGTTTCCGGCGATATTGCAG
AGTTTTAATCAGACGGAAATTTTCCTGAAACTGCTGGGGAAGAAGGCCAT
GACGGGGGACACGCTGGCGAGCAGTCGGAAGAGGGTAGGGGTGGAGGAAT
TGCGGGAAGGTAAATTCTTGTTGGCGTTCGCTCATGCGGATTCGCCGTCG
TCGAGCCCTTCGTTGAGTGGAGGGCGGTCGCCTTTGGACTCGTTGGGATC
GTCGGTGGGAGGGGGGAGGGTGCGGTGGGTTGATGAGGAGGGAGGGAGAG
GAGGGAGGAGGGGGGGAAGGTAGTGAAGATGATTTGAAGGAGGAAGAGGA
GGAGGAGGGACAGCGGACGGTGGTGGGTTTGTTTATGTGTAGAGTCGGAG
GAGGAGGGGGTGGGGGATGTAGGAGGTAAGGGCAAGATCCATCAATGCTC
TTTGCGAGGGATTGCCGTCAAATGTTATGAAGAGAGAAGGGGAGATGGCG
AGAAGGGAAGTGAGAGAGGAAGGACACATGCCAAGAAAAGGGAGAGGAAG
AGAAAGGAGAGGGAGAAGGAAAAAAAAATCAGGAGAATAATAGTAAGGAG
AAAAAAAAAGAACAAGAAGAATAATTAGAATAAGAGAAAGAAGAGGAGGG
GGAGGTAAAAGAAGAAGAGGTAGAAGTAGGAAAAGAAGAAGAGGAAGAAG
ATGGGAAGAAGAACAGGAAGAAGGGAAGGAGGAGAATCACCAACCAAAAG
CAATTCATAAAAGAAGCAAAAACCTCCTTTTTACACAAAAATAT
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protein sequence of NO02G05560.1

>NO02G05560.1-protein ID=NO02G05560.1-protein|Name=NO02G05560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MERLRREGRECALLKFYGETAVATREEALKDAKRHRAHLLAVLEAVARHG
KEEADGKLEGQKEGLREVMLEEMVGGRWLVGGGGGREGGGRGGGNGNLSA
AAAANLLMKRKRGPGGLSSIFQRTLEEEEAEEDLHAITADDRFALEEMEA
VGVGREAPLPVVEVRIEKRGVYYGDMHFVKNDALVVTNARIRDSFPAILQ
SFNQTEIFLKLLGKKAMTGDTLASSRKRVGVEELREGKFLLAFAHADSPS
SSPSLSGGRSPLDSLGSSVGGGRVRWVDEEGGRGGRRGGR*
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mRNA from alignment at chr2:1479520..1481000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05560.1 ID=NO02G05560.1|Name=NO02G05560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at chr2:1479520..1481000- (Nannochloropsis oceanica)
ATGGAGCGGCTTCGGCGGGAAGGAAGGGAGTGTGCCTTGTTGAAGTTTTA
TGGGGAGACGGCCGTGGCCACCCGCGAGGAGGCATTGAAGGACGCCAAGC
GACACAGAGCCCATTTGCTGGCTGTATTGGAGGCCGTTGCTCGGCATGGG
AAGGAGGAAGCGGATGGGAAGTTGGAGGGGCAGAAGGAGGGACTGCGGGA
GGTCATGCTGGAGGAGATGGTGGGTGAGCTGAAGGAGTGCCAAGAGGCTT
TGAGAGTCGCTGAAGCTGAGGACGAGGGAGGGGGGCGGGAGGGAGGGAAG
GAAGGAGGGGTGGTGGTACCGGCACGGACGGTCATGACGAGACACACGAG
GAAAATCAAGGGGGGAGATGGCTTGTTGGAGGAGGAGGAGGGAGGGAGGG
GGGAGGGAGGGGGGGAGGGAATGGGAATTTATCGGCTGCAGCAGCGGCGA
ACCTGCTGATGAAAAGAAAGAGGGGACCAGGGGGATTGAGCTCGATCTTC
CAACGGACGTTGGAGGAGGAGGAAGCGGAGGAGGACTTGCATGCTATCAC
TGCAGACGACCGATTTGCCCTGGAAGAGATGGAGGCGGTGGGAGTAGGGA
GGGAGGCGCCTCTTCCTGTTGTGGAGGTACGAATCGAGAAAAGAGGAGTC
TATTATGGCGATATGCACTTTGTTAAGAATGACGCCCTGGTGGTGACCAA
TGCCCGGATTCGTGATTCGTTTCCGGCGATATTGCAGAGTTTTAATCAGA
CGGAAATTTTCCTGAAACTGCTGGGGAAGAAGGCCATGACGGGGGACACG
CTGGCGAGCAGTCGGAAGAGGGTAGGGGTGGAGGAATTGCGGGAAGGTAA
ATTCTTGTTGGCGTTCGCTCATGCGGATTCGCCGTCGTCGAGCCCTTCGT
TGAGTGGAGGGCGGTCGCCTTTGGACTCGTTGGGATCGTCGGTGGGAGGG
GGGAGGGTGCGGTGGGTTGATGAGGAGGGAGGGAGAGGAGGGAGGAGGGG
GGGAAGGTAGTGAAGATGATTTGAAGGAGGAAGAGGAGGAGGAGGGACAG
CGGACGGTGGTGGGTTTGTTTATGTGTAGAGTCGGAGGAGGAGGGGGTGG
GGGATGTAGGAGGTAAGGGCAAGATCCATCAATGCTCTTTGCGAGGGATT
GCCGTCAAATGTTATGAAGAGAGAAGGGGAGATGGCGAGAAGGGAAGTGA
GAGAGGAAGGACACATGCCAAGAAAAGGGAGAGGAAGAGAAAGGAGAGGG
AGAAGGAAAAAAAAATCAGGAGAATAATAGTAAGGAGAAAAAAAAAGAAC
AAGAAGAATAATTAGAATAAGAGAAAGAAGAGGAGGGGGAGGTAAAAGAA
GAAGAGGTAGAAGTAGGAAAAGAAGAAGAGGAAGAAGATGGGAAGAAGAA
CAGGAAGAAGGGAAGGAGGAGAATCACCAACCAAAAGCAATTCATAAAAG
AAGCAAAAACCTCCTTTTTACACAAAAATAT
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Coding sequence (CDS) from alignment at chr2:1479520..1481000-

>NO02G05560.1 ID=NO02G05560.1|Name=NO02G05560.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr2:1479520..1481000- (Nannochloropsis oceanica)
ATGGAGCGGCTTCGGCGGGAAGGAAGGGAGTGTGCCTTGTTGAAGTTTTA
TGGGGAGACGGCCGTGGCCACCCGCGAGGAGGCATTGAAGGACGCCAAGC
GACACAGAGCCCATTTGCTGGCTGTATTGGAGGCCGTTGCTCGGCATGGG
AAGGAGGAAGCGGATGGGAAGTTGGAGGGGCAGAAGGAGGGACTGCGGGA
GGTCATGCTGGAGGAGATGGTGGGGGGGAGATGGCTTGTTGGAGGAGGAG
GAGGGAGGGAGGGGGGAGGGAGGGGGGGAGGGAATGGGAATTTATCGGCT
GCAGCAGCGGCGAACCTGCTGATGAAAAGAAAGAGGGGACCAGGGGGATT
GAGCTCGATCTTCCAACGGACGTTGGAGGAGGAGGAAGCGGAGGAGGACT
TGCATGCTATCACTGCAGACGACCGATTTGCCCTGGAAGAGATGGAGGCG
GTGGGAGTAGGGAGGGAGGCGCCTCTTCCTGTTGTGGAGGTACGAATCGA
GAAAAGAGGAGTCTATTATGGCGATATGCACTTTGTTAAGAATGACGCCC
TGGTGGTGACCAATGCCCGGATTCGTGATTCGTTTCCGGCGATATTGCAG
AGTTTTAATCAGACGGAAATTTTCCTGAAACTGCTGGGGAAGAAGGCCAT
GACGGGGGACACGCTGGCGAGCAGTCGGAAGAGGGTAGGGGTGGAGGAAT
TGCGGGAAGGTAAATTCTTGTTGGCGTTCGCTCATGCGGATTCGCCGTCG
TCGAGCCCTTCGTTGAGTGGAGGGCGGTCGCCTTTGGACTCGTTGGGATC
GTCGGTGGGAGGGGGGAGGGTGCGGTGGGTTGATGAGGAGGGAGGGAGAG
GAGGGAGGAGGGGGGGAAGGTAG
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Synonyms
Publications