NO02G05430, NO02G05430 (gene) Nannochloropsis oceanica

Overview
NameNO02G05430
Unique NameNO02G05430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr2:1447825..1448898 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1447825..1448898 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO02G05430 vs. NCBI_GenBank
Match: EWM30152.1 (hypothetical protein Naga_100115g10 [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 5.000e-42
Identity = 104/165 (63.03%), Postives = 119/165 (72.12%), Query Frame = 0 
Query:    1 MKFFVLLALFLATSSTVLAFTTTRRFIVPCTNPMISPSIR---SVRTARNARGGMLAMKVQPPSRKNEENERLRTLEQDSERWFQEQQRREANGELGWLENPAFYTAVFFLCPLVILVGGAATGVIPGFVPNTYEYSTMEEVKSSFSYGDLTQAAEYASGASSLF 163
            MK   LLA+FLA  ++V AF T        +    + +IR      +AR+AR  ML MKV P   K  ENERLRTLE DSERWFQEQ+RREANGE+G LENPAFYTA+FFLCPLVILV  AATGVIPGF+     YST++EVKSS SYG+LT AAEYASGASSLF
Sbjct:   83 MKVLALLAVFLAAVASVSAFLTVPSHRCALSTQSSTANIRKHFGTTSARSARNAMLVMKVMPGGNKG-ENERLRTLESDSERWFQEQERREANGEIGLLENPAFYTAIFFLCPLVILVASAATGVIPGFISTPSTYSTLDEVKSSLSYGELTSAAEYASGASSLF 246
The following BLAST results are available for this feature:
BLAST of NO02G05430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30152.15.000e-4263.03hypothetical protein Naga_100115g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007209NSK007209Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05430.1NO02G05430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575447gene_1132Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100115g10gene503Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05430.1NO02G05430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05430 ID=NO02G05430|Name=NO02G05430|organism=Nannochloropsis oceanica|type=gene|length=1074bp
ATGAAGTTCTTTGTCCTGCTGGCTCTGTTCCTGGCCACCTCCTCTACTGT
GCTTGCATTCACCACTACTAGGCgtaagttctgaagaacgggaggatctg
cagtgcctgtcatgacttcgatccaatgtggtcatatagatagctatggg
agggttcataagggatagaggggctgcgcccatgactgacgggaaaagga
gatgggagacaaaattctctcatcacaccgtctggaacccctcgtccgac
acagGTTTCATCGTCCCGTGCACCAATCCGATGATTTCACCGTCGATCCG
CAGTGTCCGGACCGCCCGAAATGCTCGTGGTGGTATGCTGGCCATGAAAG
TCCAACCCCCGAGCCGCAAAAACGAGGAGAACGAACGCCTGCGAACCCTG
GAGCAGGACTCAGAGAGGTGGTTCCAAGAACAGCAACGACGGGAGGCGAA
CGGCGAGTTGGgtaagtaaaatcaagtagaaggagtaaagagcatgccgt
agaaatcatgatggggctgggagagcaagagaagtgatctgtatgtctct
ggcggacctcttcctccctctctccttccttccctccattctcctttcct
cctctctatttgtgtttcccgctgatgacaattaactgaaatccaacact
tagacctttttcattgaaggtgctgctgaatttcaatgaattcgagcttt
ttaaccctgaggaaaacacaccgaaccccaccactccctccctctccctc
cctaccttgcataccctcacggacgagtccaaagcacttcaacgcctcac
acacatgcctcctccgaatttcatttttctgtcttttccctttattctta
accctctaccaacagGATGGCTCGAGAACCCAGCGTTTTATACCGCAGTT
TTCTTCCTCTGCCCCCTCGTCATTCTGGTGGGGGGCGCCGCAACGGGTGT
CATCCCAGGCTTTGTCCCCAACACTTACGAATACTCTACCATGGAGGAGG
TGAAGAGCAGTTTCTCCTATGGAGATTTGACGCAGGCCGCCGAATATGCA
TCTGGTGCGAGTTCGTTGTTTTAA
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protein sequence of NO02G05430.1

>NO02G05430.1-protein ID=NO02G05430.1-protein|Name=NO02G05430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MKFFVLLALFLATSSTVLAFTTTRRFIVPCTNPMISPSIRSVRTARNARG
GMLAMKVQPPSRKNEENERLRTLEQDSERWFQEQQRREANGELGWLENPA
FYTAVFFLCPLVILVGGAATGVIPGFVPNTYEYSTMEEVKSSFSYGDLTQ
AAEYASGASSLF*
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Synonyms
Publications