NO02G05430.1, NO02G05430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05430.1
Unique NameNO02G05430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length489
Alignment locationchr2:1447825..1448898 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1447825..1448898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G05430.1 vs.
Match: EWM30152.1 (hypothetical protein Naga_100115g10 [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 5.000e-42
Identity = 104/165 (63.03%), Postives = 119/165 (72.12%), Query Frame = 0 
Query:    1 MKFFVLLALFLATSSTVLAFTTTRRFIVPCTNPMISPSIRS---VRTARNARGGMLAMKVQPPSRKNEENERLRTLEQDSERWFQEQQRREANGELGWLENPAFYTAVFFLCPLVILVGGAATGVIPGFVPNTYEYSTMEEVKSSFSYGDLTQAAEYASGASSLF 163
            MK   LLA+FLA  ++V AF T        +    + +IR      +AR+AR  ML MKV P   K E NERLRTLE DSERWFQEQ+RREANGE+G LENPAFYTA+FFLCPLVILV  AATGVIPGF+     YST++EVKSS SYG+LT AAEYASGASSLF
Sbjct:   83 MKVLALLAVFLAAVASVSAFLTVPSHRCALSTQSSTANIRKHFGTTSARSARNAMLVMKVMPGGNKGE-NERLRTLESDSERWFQEQERREANGEIGLLENPAFYTAIFFLCPLVILVASAATGVIPGFISTPSTYSTLDEVKSSLSYGELTSAAEYASGASSLF 246
The following BLAST results are available for this feature:
BLAST of NO02G05430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30152.15.000e-4263.03hypothetical protein Naga_100115g10 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05430NO02G05430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05430.1NO02G05430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05430.1.cds1NO02G05430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05430.1.cds2NO02G05430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05430.1.cds3NO02G05430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05430.1 ID=NO02G05430.1|Name=NO02G05430.1|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ATGAAGTTCTTTGTCCTGCTGGCTCTGTTCCTGGCCACCTCCTCTACTGT
GCTTGCATTCACCACTACTAGGCGTTTCATCGTCCCGTGCACCAATCCGA
TGATTTCACCGTCGATCCGCAGTGTCCGGACCGCCCGAAATGCTCGTGGT
GGTATGCTGGCCATGAAAGTCCAACCCCCGAGCCGCAAAAACGAGGAGAA
CGAACGCCTGCGAACCCTGGAGCAGGACTCAGAGAGGTGGTTCCAAGAAC
AGCAACGACGGGAGGCGAACGGCGAGTTGGGATGGCTCGAGAACCCAGCG
TTTTATACCGCAGTTTTCTTCCTCTGCCCCCTCGTCATTCTGGTGGGGGG
CGCCGCAACGGGTGTCATCCCAGGCTTTGTCCCCAACACTTACGAATACT
CTACCATGGAGGAGGTGAAGAGCAGTTTCTCCTATGGAGATTTGACGCAG
GCCGCCGAATATGCATCTGGTGCGAGTTCGTTGTTTTAA
back to top

protein sequence of NO02G05430.1

>NO02G05430.1-protein ID=NO02G05430.1-protein|Name=NO02G05430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MKFFVLLALFLATSSTVLAFTTTRRFIVPCTNPMISPSIRSVRTARNARG
GMLAMKVQPPSRKNEENERLRTLEQDSERWFQEQQRREANGELGWLENPA
FYTAVFFLCPLVILVGGAATGVIPGFVPNTYEYSTMEEVKSSFSYGDLTQ
AAEYASGASSLF*
back to top

mRNA from alignment at chr2:1447825..1448898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05430.1 ID=NO02G05430.1|Name=NO02G05430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at chr2:1447825..1448898+ (Nannochloropsis oceanica)
ATGAAGTTCTTTGTCCTGCTGGCTCTGTTCCTGGCCACCTCCTCTACTGT
GCTTGCATTCACCACTACTAGGCGTAAGTTCTGAAGAACGGGAGGATCTG
CAGTGCCTGTCATGACTTCGATCCAATGTGGTCATATAGATAGCTATGGG
AGGGTTCATAAGGGATAGAGGGGCTGCGCCCATGACTGACGGGAAAAGGA
GATGGGAGACAAAATTCTCTCATCACACCGTCTGGAACCCCTCGTCCGAC
ACAGGTTTCATCGTCCCGTGCACCAATCCGATGATTTCACCGTCGATCCG
CAGTGTCCGGACCGCCCGAAATGCTCGTGGTGGTATGCTGGCCATGAAAG
TCCAACCCCCGAGCCGCAAAAACGAGGAGAACGAACGCCTGCGAACCCTG
GAGCAGGACTCAGAGAGGTGGTTCCAAGAACAGCAACGACGGGAGGCGAA
CGGCGAGTTGGGTAAGTAAAATCAAGTAGAAGGAGTAAAGAGCATGCCGT
AGAAATCATGATGGGGCTGGGAGAGCAAGAGAAGTGATCTGTATGTCTCT
GGCGGACCTCTTCCTCCCTCTCTCCTTCCTTCCCTCCATTCTCCTTTCCT
CCTCTCTATTTGTGTTTCCCGCTGATGACAATTAACTGAAATCCAACACT
TAGACCTTTTTCATTGAAGGTGCTGCTGAATTTCAATGAATTCGAGCTTT
TTAACCCTGAGGAAAACACACCGAACCCCACCACTCCCTCCCTCTCCCTC
CCTACCTTGCATACCCTCACGGACGAGTCCAAAGCACTTCAACGCCTCAC
ACACATGCCTCCTCCGAATTTCATTTTTCTGTCTTTTCCCTTTATTCTTA
ACCCTCTACCAACAGGATGGCTCGAGAACCCAGCGTTTTATACCGCAGTT
TTCTTCCTCTGCCCCCTCGTCATTCTGGTGGGGGGCGCCGCAACGGGTGT
CATCCCAGGCTTTGTCCCCAACACTTACGAATACTCTACCATGGAGGAGG
TGAAGAGCAGTTTCTCCTATGGAGATTTGACGCAGGCCGCCGAATATGCA
TCTGGTGCGAGTTCGTTGTTTTAA
back to top

Coding sequence (CDS) from alignment at chr2:1447825..1448898+

>NO02G05430.1 ID=NO02G05430.1|Name=NO02G05430.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr2:1447825..1448898+ (Nannochloropsis oceanica)
ATGAAGTTCTTTGTCCTGCTGGCTCTGTTCCTGGCCACCTCCTCTACTGT
GCTTGCATTCACCACTACTAGGCGTTTCATCGTCCCGTGCACCAATCCGA
TGATTTCACCGTCGATCCGCAGTGTCCGGACCGCCCGAAATGCTCGTGGT
GGTATGCTGGCCATGAAAGTCCAACCCCCGAGCCGCAAAAACGAGGAGAA
CGAACGCCTGCGAACCCTGGAGCAGGACTCAGAGAGGTGGTTCCAAGAAC
AGCAACGACGGGAGGCGAACGGCGAGTTGGGATGGCTCGAGAACCCAGCG
TTTTATACCGCAGTTTTCTTCCTCTGCCCCCTCGTCATTCTGGTGGGGGG
CGCCGCAACGGGTGTCATCCCAGGCTTTGTCCCCAACACTTACGAATACT
CTACCATGGAGGAGGTGAAGAGCAGTTTCTCCTATGGAGATTTGACGCAG
GCCGCCGAATATGCATCTGGTGCGAGTTCGTTGTTTTAA
back to top
Synonyms
Publications