NO02G05230, NO02G05230 (gene) Nannochloropsis oceanica

Overview
NameNO02G05230
Unique NameNO02G05230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3395
Alignment locationchr2:1397848..1401242 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1397848..1401242 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05230.1NO02G05230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|151479gene_1116Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05230.1NO02G05230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05230 ID=NO02G05230|Name=NO02G05230|organism=Nannochloropsis oceanica|type=gene|length=3395bp
ATGCGGCTGTGTCGAAGAAGACCCAGGAGTGAAGGAGGAGGACGCGCCTC
AGgtacgttcgtgttgttatcgacctatgcgcacacctcacgctattctc
agaccaaatacgagccgctttgacggacttgcgcctgcttcttaagatag
gtcggtcatgtgtttttgccccctacgacttctttgtcctacttccttgc
ttgcgtcttttccgtcctccacacttgaccgacggttgcaaagtcacttc
tccgaaagcggatgctgatttgcctagatcgctccccgtcctgtcccacc
ttgacgctcacagattcttttccccctttcctgtcatgccctttactcca
aatagCAACCGCACCTCTTTTTCTCCTCGCCCTCCTTCTTCCGGACCACG
CCTGTGCTTTCTTCACCGCCAGTCAACGTCGCCACAACACTCCGCATGAG
AGTAGCCATCTCTCACCATATTCCTCTTCTTCCTCTTCTTCCACTTCCTC
TTCCGATTTCACTACTCCGTCTTCGTCTTCAATCCCCACTCACCTCCGCG
CTTCCCCCTCTCCTTCCTCCTCTTCCTCCTCTCCCTCTTCGCCTTCCTCT
ACCTCTCCCTCCTCAACCAACCACCACCACAAGCTCCTAAATCACGCCCT
GGAGAATCAATCGACCTACCAAGACCTCCTCCTCCTCATCGCCTCGGACG
TCAACAATTTCAACAGCATTAATTGCGCAACCGCCCTCTCACGCCTCTCG
CGATTGGCTTTCCAAGAACATCGGCGGCCGCACACCATCACGGCAGACCC
GACTGTCCGGGCTCTACTGAGCCAAGTCGAGACGCAAATAGAGAGCAGTG
GCCCGGGGCAACAAAATCAATTTTTGTCATCCTTGGCCCGGATGGGGGTC
GTGCCCGAGGGGGAGCTGCTCCGGAGACTACAGGAGAAGATAGAGGAAGA
TGTGGAGGGGTATCGGGCGGTGGAACTTGCAGGGCTGCTGAATGCCATGG
CTCGTCTCTCTTCCCCGTCCTCCTTCGCCTCCTCGTCCTCGTTCCCCCCA
TCGGACTCATCATTCTCCTCCTTCTCGTCCTCCTCCTCCTCCTCGGGGAG
CAGTGGGgtgagctggccccgccccctccttcgtcgcctcacccagcaag
cctgcatcgtgcttgcaaatccctccccccgtccctcctctccctcctcc
tccccccccccctcttcaccctccatcacctcctcctctctctcctcccc
ccctcctcctcttcaccctccatcaccaacaagGGGCCGGAAGGAAGAAG
AGGAGGAGGAGGAGGAGGCAAGGATGGTGCACTGTTGAGCAATCTTTACT
GCTCCCTGGTCAAGCTTCTCAACCGCTCTCCGGGGCCCGCAGTCACACGA
CCTTTCCTTCGTCGCCTTCTCGCCCTGGAGAGAGGGAGGAAGGGGAAGGG
AGGAGAGGGGTTGGAAAAGGGCTTGCGAGTGTTGGACTCGCATTGGCTCG
CGCAGGTGCTCAATGTGTTGGGGAGGGCGGCGGGACAAGACGAAGAAGAG
GAGGAGGAAGGGAGGGAGGATAAGGGCGACAGCGACAGCAGCATTGACCT
GGTCTTCCTCCTCGCGGCACAAGACGAAGTCCTTCGACGCCTCAATCACC
TCCCCCCCCTCGATCTAGCGATGTGTGCGTCGGCACTAGGCAAGCTCCAT
CCTCTCCCCGGGCCCTTCTTTTACCTTGCCCTCTGCAACCACGTTTCCAA
ACGCCTTTCCTCTTCCCCTCCCTCCTCCTCATCCTCCACCTTCTCCTCCA
ATTTCCCCACCCCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTTCTCCACCCAGACCCTCGCCCTCCTCACCAACGGTCT
TGGTAACCTCCAACACACCTCCTCCTCCCCCTTACCCTCCTCCTCCCTCT
TCTCCTCCCTCCTCCTTGATCACATCCAGCCCCGCCTCCCCTCCTTCCGT
CCCTCCGAGCTCGCCAACGTCCTTGGAGGCCTGGGCAAGCTCCGTGCCTC
CCCCTCCCCCTCCTTCCTCTCCCTTGCCACAGACCTCCTCATCAAACAGG
CCGACGCCTTCACCCCGTCGGAGATGGCTAGTGCCGTGTTTGGCCTGGTG
AAAATGAAGGCCAAATGGAGCAAGGAATTGCGGAGCGCAGTGCAGGGGTG
GGGGGATAGGACGATGAGAAAGGTGGAAAGGATGGTGGTGGAGGGAGGGA
GGGAGGGAGGGAGGAGGACGGCCGTGGTGGTCGCGCGGGAGGTCGGGCAT
GTATTGAACACATTTATCCGTCTCGGTCTCCAGCCTGATGAAGATCTCCT
CATGCGCGCCCAAGCCCTTTTCCTTCAACCCACCCATTCCTACCCCGTGT
CCCCGCCCGCCCTCCCTCCCTCCCTCATCCTCCACCACGCCCCCCTCCGT
AGCCTTGCCATGGTCCTTGTTGCTTTTGCTCGTTTTAAATATCATCCCGG
ACAGGCCTTTCTCCTCCACGCCGCCAACACAGGCTTCAAAGCGACAGATG
GAGGAGGAGGAGGAGGACGAGGACGAGGAGGAGGACGAGGAGGAGGAAGG
GGGGGAAGCGCTTTGCACACAGCCTTATTCCTGAGCGCGTTGAGCCGACT
GGGGCACGAGCCAACAAGGACGCAGGTGGATATTGCCTTTGGGATGCTGG
CCTCTAACGTAGGGGAATTAGGCGATAAATGTTTGTTTAACACGATGTAC
GCCCTTGGTAAATGGGAGCCCTCTTTGAGGGAGGGCGGGAAGGGGGGCGG
GGCTGAAGGAGGGAGGGAGGGAGAAGGAGGGAGAGGGAGGAAAGCATTTT
TGAAGGTGTGGGAGGAAGAGAGGGCTTGGGAGTGGTTGAGGGGCTTGGCG
GTGTCGCAGTTGGTGGTGACTGCGTGGAGTTTGAAGGCGTTGGGGTACTG
GTGCGCATCTCCGACGGTGGCACGTGCGTTCAAGGAGGCGGTGGAGGGAG
GGAGGGAGGGAGGGAGGGAGAGAAGGGAAGAAGGTGGGGCCGATTTGACG
GATACGGAGGCGGCGTCATTGTTGCATTCATTGCGGTGCATTGGGGTGGA
TGTAAGTGAGTACCCTCCCCTAGTTCTGCTCAAGGGAGAAAGAGGCGGAC
TTTCCTCTCTCCCCTCTTCTCCTATTTCTTCCTCTTCCTCATCTTCCTCC
TCTTTAAAAGAGGGTCTAGGAGGAGGTGGAAGGCCCTCCTCGCCCGTAAT
GTTACTCACGCGAGAAAGAGCTCGACAGCAGGTACGAGTCAAAATCCCCA
TTTTCCCTTCAGGGGAGGACGTTGCCGGTGCGGAGGATGAAGGGAGAAAG
AGAGCGGAAAAGGAGGAAGGAGAGGAGAAAGAGGAACAGGAATAG
back to top

protein sequence of NO02G05230.1

>NO02G05230.1-protein ID=NO02G05230.1-protein|Name=NO02G05230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=972bp
MRLCRRRPRSEGGGRASATAPLFLLALLLPDHACAFFTASQRRHNTPHES
SHLSPYSSSSSSSTSSSDFTTPSSSSIPTHLRASPSPSSSSSSPSSPSST
SPSSTNHHHKLLNHALENQSTYQDLLLLIASDVNNFNSINCATALSRLSR
LAFQEHRRPHTITADPTVRALLSQVETQIESSGPGQQNQFLSSLARMGVV
PEGELLRRLQEKIEEDVEGYRAVELAGLLNAMARLSSPSSFASSSSFPPS
DSSFSSFSSSSSSSGSSGGPEGRRGGGGGGKDGALLSNLYCSLVKLLNRS
PGPAVTRPFLRRLLALERGRKGKGGEGLEKGLRVLDSHWLAQVLNVLGRA
AGQDEEEEEEGREDKGDSDSSIDLVFLLAAQDEVLRRLNHLPPLDLAMCA
SALGKLHPLPGPFFYLALCNHVSKRLSSSPPSSSSSTFSSNFPTPFSSSS
SSSSSSSSSSSFSTQTLALLTNGLGNLQHTSSSPLPSSSLFSSLLLDHIQ
PRLPSFRPSELANVLGGLGKLRASPSPSFLSLATDLLIKQADAFTPSEMA
SAVFGLVKMKAKWSKELRSAVQGWGDRTMRKVERMVVEGGREGGRRTAVV
VAREVGHVLNTFIRLGLQPDEDLLMRAQALFLQPTHSYPVSPPALPPSLI
LHHAPLRSLAMVLVAFARFKYHPGQAFLLHAANTGFKATDGGGGGGRGRG
GGRGGGRGGSALHTALFLSALSRLGHEPTRTQVDIAFGMLASNVGELGDK
CLFNTMYALGKWEPSLREGGKGGGAEGGREGEGGRGRKAFLKVWEEERAW
EWLRGLAVSQLVVTAWSLKALGYWCASPTVARAFKEAVEGGREGGRERRE
EGGADLTDTEAASLLHSLRCIGVDVSEYPPLVLLKGERGGLSSLPSSPIS
SSSSSSSSLKEGLGGGGRPSSPVMLLTRERARQQVRVKIPIFPSGEDVAG
AEDEGRKRAEKEEGEEKEEQE*
back to top
Synonyms
Publications