NO02G05060, NO02G05060 (gene) Nannochloropsis oceanica

Overview
NameNO02G05060
Unique NameNO02G05060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length946
Alignment locationchr2:1360402..1361347 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1360402..1361347 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO02G05060 vs. NCBI_GenBank
Match: EWM30168.1 (hypothetical protein Naga_100096g13 [Nannochloropsis gaditana])

HSP 1 Score: 142.9 bits (359), Expect = 6.800e-31
Identity = 83/129 (64.34%), Postives = 94/129 (72.87%), Query Frame = 0 
Query:    1 MAGAARRSPLPLLALIIVFLALAAQAFVVPKTSLKVTASSRRSGRFAVSQPLRALDSEWLST----VASPIPSSTLVADYFSTVDEIAAGIGNTPWLQFFIPTAVGMSIALAIVFSLYITAQPYEPPSK 126
            MAGAARRS    LAL  V     AQAF+ PKT  +    +RRS   A   PL+A +S+W ST    VASP  S+TL+ADYFSTVDEIAA IGNTPWLQFFIPTAVGMSI+LAIVFSLY+ AQPYEPP +
Sbjct:    2 MAGAARRSSHTALALAFVLTTFVAQAFLAPKT--QGLPIARRSTPAASCGPLQAFESDWFSTAASSVASPPSSTTLIADYFSTVDEIAASIGNTPWLQFFIPTAVGMSISLAIVFSLYLAAQPYEPPER 128
The following BLAST results are available for this feature:
BLAST of NO02G05060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30168.16.800e-3164.34hypothetical protein Naga_100096g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007183NSK007183Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05060.1NO02G05060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575303gene_1097Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100096g13gene485Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05060.1NO02G05060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05060 ID=NO02G05060|Name=NO02G05060|organism=Nannochloropsis oceanica|type=gene|length=946bp
CAAACCACAGGTCTCGCTGCGTCCCCCTCCTCCACCACACACAAGCACCA
TGGCGGGCGCAGCACGGCGGTCGCCCCTTCCTCTCCTGGCTCTGATCATT
GTCTTCCTGGCCCTGGCGGCGCAAGCTTTTGTGGTGCCTAAGACTTCTTT
GAAAGgtaatttctgtctgttgctgccgcgaagagatagttgaatgcatt
gagcgtgtccggagggggaggagctgaaacaagagtgagggacgggtttt
acattcgagcagaagcaacggcgacccgaagtttcttgaaaccattcgag
caagcgcctgtcgtggccctcatgttcaaaggatatgatcctgaggggtt
ggaaatgacagagagagggcatattctttcatgtatcattttcatccaga
gacacttttccccctcctataatacagTCACGGCAAGCAGCAGAAGATCA
GGCCGCTTTGCCGTCTCCCAGCCTCTACGTGCCCTTGACTCCGAGTGGCT
AAGCACTGTGGCCTCCCCCATCCCCTCATCCACGCTGGTCGCCGATTATT
TCTCCACCGTGGATGAAATCGCTGCGGGTATCGGTAACACGCCTTGGTTG
CAGTTTTTCATTCCTACGGCGGTTGGTATGTCAATTGCGTTGGCCATTGT
GTTCTCGCTTTATATCACTGCGCAGCCCTATGAGCCACCCAGTAAGTAAG
GATGGGGATGAGGACAGAACGGGGGAAAGGAAGCATGAGAGCAGGGATGT
TGTGTGAGAGAAAAGGGGACGGACGAGGTGGGGAATGGGTGAGAGTAGAC
TAGAAAGATGGTGCGCTAGGGCATTTTGAGCAGTAGTGTATGAGTGTGGT
GGTGATGAGGTGGTTAGAAAAACAACGATAACCATGCAAGAAAAAGAAAG
GAAAAGTGCGAATATCTGATTGAAGTGATATAATGCTAGAAAATCT
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protein sequence of NO02G05060.1

>NO02G05060.1-protein ID=NO02G05060.1-protein|Name=NO02G05060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MAGAARRSPLPLLALIIVFLALAAQAFVVPKTSLKVTASSRRSGRFAVSQ
PLRALDSEWLSTVASPIPSSTLVADYFSTVDEIAAGIGNTPWLQFFIPTA
VGMSIALAIVFSLYITAQPYEPPSK*
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Synonyms
Publications