NO02G05060.1, NO02G05060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05060.1
Unique NameNO02G05060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length674
Alignment locationchr2:1360402..1361347 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1360402..1361347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G05060.1 vs.
Match: EWM30168.1 (hypothetical protein Naga_100096g13 [Nannochloropsis gaditana])

HSP 1 Score: 142.9 bits (359), Expect = 6.800e-31
Identity = 84/129 (65.12%), Postives = 93/129 (72.09%), Query Frame = 0
Query:    1 MAGAARRSPLPLLALIIVFLALAAQAFVVPKTSLKVTASSRRSGRFAVSQPLRALDSEWLST----VASPIPSSTLVADYFSTVDEIAAGIGNTPWLQFFIPTAVGMSIALAIVFSLYITAQPYEPPSK 126
            MAGAARRS    LAL  V     AQAF+ PKT     A  RRS   A   PL+A +S+W ST    VASP  S+TL+ADYFSTVDEIAA IGNTPWLQFFIPTAVGMSI+LAIVFSLY+ AQPYEPP +
Sbjct:    2 MAGAARRSSHTALALAFVLTTFVAQAFLAPKTQGLPIA--RRSTPAASCGPLQAFESDWFSTAASSVASPPSSTTLIADYFSTVDEIAASIGNTPWLQFFIPTAVGMSISLAIVFSLYLAAQPYEPPER 128          
The following BLAST results are available for this feature:
BLAST of NO02G05060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30168.16.800e-3165.12hypothetical protein Naga_100096g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05060NO02G05060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05060.1NO02G05060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05060.1.cds1NO02G05060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05060.1.cds2NO02G05060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05060.1 ID=NO02G05060.1|Name=NO02G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=674bp
CAAACCACAGGTCTCGCTGCGTCCCCCTCCTCCACCACACACAAGCACCA
TGGCGGGCGCAGCACGGCGGTCGCCCCTTCCTCTCCTGGCTCTGATCATT
GTCTTCCTGGCCCTGGCGGCGCAAGCTTTTGTGGTGCCTAAGACTTCTTT
GAAAGTCACGGCAAGCAGCAGAAGATCAGGCCGCTTTGCCGTCTCCCAGC
CTCTACGTGCCCTTGACTCCGAGTGGCTAAGCACTGTGGCCTCCCCCATC
CCCTCATCCACGCTGGTCGCCGATTATTTCTCCACCGTGGATGAAATCGC
TGCGGGTATCGGTAACACGCCTTGGTTGCAGTTTTTCATTCCTACGGCGG
TTGGTATGTCAATTGCGTTGGCCATTGTGTTCTCGCTTTATATCACTGCG
CAGCCCTATGAGCCACCCAGTAAGTAAGGATGGGGATGAGGACAGAACGG
GGGAAAGGAAGCATGAGAGCAGGGATGTTGTGTGAGAGAAAAGGGGACGG
ACGAGGTGGGGAATGGGTGAGAGTAGACTAGAAAGATGGTGCGCTAGGGC
ATTTTGAGCAGTAGTGTATGAGTGTGGTGGTGATGAGGTGGTTAGAAAAA
CAACGATAACCATGCAAGAAAAAGAAAGGAAAAGTGCGAATATCTGATTG
AAGTGATATAATGCTAGAAAATCT
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protein sequence of NO02G05060.1

>NO02G05060.1-protein ID=NO02G05060.1-protein|Name=NO02G05060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MAGAARRSPLPLLALIIVFLALAAQAFVVPKTSLKVTASSRRSGRFAVSQ
PLRALDSEWLSTVASPIPSSTLVADYFSTVDEIAAGIGNTPWLQFFIPTA
VGMSIALAIVFSLYITAQPYEPPSK*
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mRNA from alignment at chr2:1360402..1361347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05060.1 ID=NO02G05060.1|Name=NO02G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=946bp|location=Sequence derived from alignment at chr2:1360402..1361347- (Nannochloropsis oceanica)
CAAACCACAGGTCTCGCTGCGTCCCCCTCCTCCACCACACACAAGCACCA TGGCGGGCGCAGCACGGCGGTCGCCCCTTCCTCTCCTGGCTCTGATCATT GTCTTCCTGGCCCTGGCGGCGCAAGCTTTTGTGGTGCCTAAGACTTCTTT GAAAGGTAATTTCTGTCTGTTGCTGCCGCGAAGAGATAGTTGAATGCATT GAGCGTGTCCGGAGGGGGAGGAGCTGAAACAAGAGTGAGGGACGGGTTTT ACATTCGAGCAGAAGCAACGGCGACCCGAAGTTTCTTGAAACCATTCGAG CAAGCGCCTGTCGTGGCCCTCATGTTCAAAGGATATGATCCTGAGGGGTT GGAAATGACAGAGAGAGGGCATATTCTTTCATGTATCATTTTCATCCAGA GACACTTTTCCCCCTCCTATAATACAGTCACGGCAAGCAGCAGAAGATCA GGCCGCTTTGCCGTCTCCCAGCCTCTACGTGCCCTTGACTCCGAGTGGCT AAGCACTGTGGCCTCCCCCATCCCCTCATCCACGCTGGTCGCCGATTATT TCTCCACCGTGGATGAAATCGCTGCGGGTATCGGTAACACGCCTTGGTTG CAGTTTTTCATTCCTACGGCGGTTGGTATGTCAATTGCGTTGGCCATTGT GTTCTCGCTTTATATCACTGCGCAGCCCTATGAGCCACCCAGTAAGTAAG GATGGGGATGAGGACAGAACGGGGGAAAGGAAGCATGAGAGCAGGGATGT TGTGTGAGAGAAAAGGGGACGGACGAGGTGGGGAATGGGTGAGAGTAGAC TAGAAAGATGGTGCGCTAGGGCATTTTGAGCAGTAGTGTATGAGTGTGGT GGTGATGAGGTGGTTAGAAAAACAACGATAACCATGCAAGAAAAAGAAAG GAAAAGTGCGAATATCTGATTGAAGTGATATAATGCTAGAAAATCT
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Coding sequence (CDS) from alignment at chr2:1360402..1361347-

>NO02G05060.1 ID=NO02G05060.1|Name=NO02G05060.1|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at chr2:1360402..1361347- (Nannochloropsis oceanica)
ATGGCGGGCGCAGCACGGCGGTCGCCCCTTCCTCTCCTGGCTCTGATCAT
TGTCTTCCTGGCCCTGGCGGCGCAAGCTTTTGTGGTGCCTAAGACTTCTT
TGAAAGTCACGGCAAGCAGCAGAAGATCAGGCCGCTTTGCCGTCTCCCAG
CCTCTACGTGCCCTTGACTCCGAGTGGCTAAGCACTGTGGCCTCCCCCAT
CCCCTCATCCACGCTGGTCGCCGATTATTTCTCCACCGTGGATGAAATCG
CTGCGGGTATCGGTAACACGCCTTGGTTGCAGTTTTTCATTCCTACGGCG
GTTGGTATGTCAATTGCGTTGGCCATTGTGTTCTCGCTTTATATCACTGC
GCAGCCCTATGAGCCACCCAGTAAGTAA
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Synonyms
Publications