NO02G04880, NO02G04880 (gene) Nannochloropsis oceanica

Overview
NameNO02G04880
Unique NameNO02G04880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length381
Alignment locationchr2:1316724..1317104 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1316724..1317104 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO02G04880 vs. NCBI_GenBank
Match: EWM30194.1 (hypothetical protein Naga_100090g5 [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 3.100e-47
Identity = 94/126 (74.60%), Postives = 107/126 (84.92%), Query Frame = 0
Query:    1 MVKFGEALSAFIKFLAGPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRGSSRSNDCAIM 127
            MVK G A++A  KFL  PTY+ NDYELAIK SK+LEHLLE EWGA GKGLHEKI+WVQ S SPLP+DLMRRMRFLATIRNKLIHD+ +T+IE+R++FIET+ERSKREL AILVQRG     DCAIM
Sbjct:    1 MVKLGGAIAAIFKFLTSPTYAKNDYELAIKTSKDLEHLLEQEWGADGKGLHEKITWVQHSDSPLPDDLMRRMRFLATIRNKLIHDITYTRIEDRARFIETFERSKRELHAILVQRGKKPGPDCAIM 126          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_008877081.1 (hypothetical protein H310_11968 [Aphanomyces invadans] >ETV94319.1 hypothetical protein H310_11968 [Aphanomyces invadans])

HSP 1 Score: 109.8 bits (273), Expect = 6.400e-21
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 0
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRGSSRSNDCAIM 127
            +SSNDYEL IK SK LE++LE E+GA GKGLHEKI+ V  S SP    L+++MRFLATIRNKLIH+  F +I +R  FI  +E +  EL+A++  R    S++C++M
Sbjct:   10 HSSNDYELVIKCSKELEYILECEFGATGKGLHEKITAVSGSLSP---QLVKQMRFLATIRNKLIHERGFDRIPDRGHFISQFEAAAGELEALVSARHGGTSSNCSVM 113          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: OQS07949.1 (hypothetical protein THRCLA_00063, partial [Thraustotheca clavata])

HSP 1 Score: 108.6 bits (270), Expect = 1.400e-20
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = 0
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRGSSRSNDCAIM 127
            +SSNDYEL IK SK LE++LE+E+GA G+GLHEKIS    +++P   +L+++MR+LATIRNKLIH+  F  I +R+ FI  +E+S +EL++I+  R    + +C IM
Sbjct:   10 HSSNDYELVIKCSKELEYILENEFGATGRGLHEKIS---SANAPFSAELIKQMRYLATIRNKLIHERGFDAIPDRANFIMKFEKSAQELESIVKSRQGHGNTNCCIM 113          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_008604255.1 (hypothetical protein SDRG_00551 [Saprolegnia diclina VS20] >EQC42832.1 hypothetical protein SDRG_00551 [Saprolegnia diclina VS20])

HSP 1 Score: 107.1 bits (266), Expect = 4.200e-20
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 0
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL-VQRGSSRSNDCAIM 127
            ++SNDYEL IK SK LE +LEH++ A G+GLHEKIS    S++ LP +L R+MR+LATIRNKLIH+  F  I +R+ FI  +E+S +EL+ I+  +RG S    C IM
Sbjct:   10 HASNDYELVIKCSKELEFILEHDFSATGRGLHEKIS----SATNLPPELARQMRYLATIRNKLIHERGFDAIPDRANFIAKFEQSAKELETIVKARRGPSGDGACIIM 113          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_012201336.1 (hypothetical protein SPRG_07151 [Saprolegnia parasitica CBS 223.65] >KDO27879.1 hypothetical protein SPRG_07151 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 106.3 bits (264), Expect = 7.100e-20
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 0
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL-VQRGSSRSNDCAIM 127
            +++NDYEL IK SK LE +LEH++ A G+GLHEKIS    S++ LP +L R+MR+LATIRNKLIH+  F  I +R+ FI  +E+S +EL+ I+  +RG S    C IM
Sbjct:   10 HANNDYELVIKCSKELEFILEHDFSATGRGLHEKIS----SATSLPPELARQMRYLATIRNKLIHERGFDAIPDRANFIAKFEQSAKELETIVKARRGPSGDGACRIM 113          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: OQR83853.1 (hypothetical protein ACHHYP_14186 [Achlya hypogyna])

HSP 1 Score: 105.5 bits (262), Expect = 1.200e-19
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 0
Query:   19 TYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAIL-VQRGSSRSNDCAIM 127
            T++SNDYEL IK SK LE++LE ++GA G+GLHEKIS      SP    L+R+MR+LATIRNKLIH+  F  I +RS FI  +E+S  EL+A++  +RG+   + C IM
Sbjct:    9 THASNDYELVIKCSKELEYILEADFGATGRGLHEKISSANGDFSP---QLVRQMRYLATIRNKLIHERGFDAIPDRSDFIAKFEQSAAELEALVKARRGNRGDSACRIM 114          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_009840533.1 (hypothetical protein H257_14424 [Aphanomyces astaci] >ETV70090.1 hypothetical protein H257_14424 [Aphanomyces astaci])

HSP 1 Score: 102.1 bits (253), Expect = 1.300e-18
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 0
Query:   20 YSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRGSSRSNDCAIM 127
            +SSNDYEL IK +K LE++LE E+GA GKGLHEKIS V   +  LP  L+++MRFLATIRNKLIH+  F +I +R  FI  +E +  +L   + +RG + SN C +M
Sbjct:   10 HSSNDYELVIKCAKELEYILEAEFGAAGKGLHEKISAV---NGQLPPQLVKQMRFLATIRNKLIHERGFDRIPDRDHFILQFEAAAGDLNERVRERGGASSN-CILM 112          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: PSC72633.1 (hypothetical protein C2E20_3848 [Micractinium conductrix])

HSP 1 Score: 99.8 bits (247), Expect = 6.600e-18
Identity = 53/109 (48.62%), Postives = 79/109 (72.48%), Query Frame = 0
Query:   23 NDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRG----SSRSND-CAIM 127
            NDYEL I++SK+LE++LE   GAQGKGLHEK S VQ   +P    L++++R+LATIRNKL+H+ +F  I +R +F+E Y+ ++RELQ ++ + G    S +S+D C +M
Sbjct:   29 NDYELVIRSSKDLEYILEAYLGAQGKGLHEKCSSVQQYLTPA---LVKKIRYLATIRNKLVHERQFHHIPDRPRFVENYQIAERELQQVVARHGRRPASGQSDDVCRMM 134          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: PRW55963.1 (hypothetical protein C2E21_5155 [Chlorella sorokiniana])

HSP 1 Score: 97.4 bits (241), Expect = 3.300e-17
Identity = 48/100 (48.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:   23 NDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRGSSRSND 123
            NDYEL I+ASK+LE++LE   GA+GKGLHEK + VQ     +P+DL +++R+LATIRNKL+H+  F  I +R +F+++Y  ++++L+ IL Q G  +  D
Sbjct:   29 NDYELVIRASKDLEYILEAYLGARGKGLHEKCTSVQ---QVIPKDLQKKIRYLATIRNKLVHERGFNHIPDRGRFVQSYLTAEQQLKDILRQHGRIKGGD 125          
BLAST of NO02G04880 vs. NCBI_GenBank
Match: XP_009534692.1 (hypothetical protein PHYSODRAFT_522589 [Phytophthora sojae] >EGZ09831.1 hypothetical protein PHYSODRAFT_522589 [Phytophthora sojae])

HSP 1 Score: 91.7 bits (226), Expect = 1.800e-15
Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 0
Query:   17 GPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQR 116
            G  YS NDY+LAI+ASK LE+LLE E+GA G+GLHE++S V+   S +P   +R +R++AT+RN+LIHD +   + +R KFI+ ++ +  EL  I+ ++
Sbjct:    9 GFVYSPNDYQLAIEASKELEYLLEKEFGAFGQGLHERVSSVE---SAIPAPTVRSIRYVATLRNRLIHDRDVRALPDRQKFIQKFDDAMVELNIIIEKK 104          
The following BLAST results are available for this feature:
BLAST of NO02G04880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30194.13.100e-4774.60hypothetical protein Naga_100090g5 [Nannochloropsi... [more]
XP_008877081.16.400e-2153.27hypothetical protein H310_11968 [Aphanomyces invad... [more]
OQS07949.11.400e-2050.47hypothetical protein THRCLA_00063, partial [Thraus... [more]
XP_008604255.14.200e-2052.78hypothetical protein SDRG_00551 [Saprolegnia dicli... [more]
XP_012201336.17.100e-2051.85hypothetical protein SPRG_07151 [Saprolegnia paras... [more]
OQR83853.11.200e-1952.29hypothetical protein ACHHYP_14186 [Achlya hypogyna... [more]
XP_009840533.11.300e-1852.34hypothetical protein H257_14424 [Aphanomyces astac... [more]
PSC72633.16.600e-1848.62hypothetical protein C2E20_3848 [Micractinium cond... [more]
PRW55963.13.300e-1748.00hypothetical protein C2E21_5155 [Chlorella sorokin... [more]
XP_009534692.11.800e-1546.46hypothetical protein PHYSODRAFT_522589 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007167NSK007167Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04880.1NO02G04880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575256gene_1082Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100090g5gene471Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04880.1NO02G04880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04880 ID=NO02G04880|Name=NO02G04880|organism=Nannochloropsis oceanica|type=gene|length=381bp
ATGGTCAAATTCGGAGAGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGG
GCCAACCTACTCCAGCAATGACTACGAACTTGCCATCAAGGCAAGCAAGA
ATCTAGAACATTTATTGGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTG
CACGAGAAAATCTCCTGGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGA
CCTGATGCGTAGGATGCGTTTCCTCGCCACAATCCGCAACAAACTCATTC
ACGATGTGGAATTTACAAAGATTGAGAATCGCAGCAAGTTTATTGAGACG
TACGAACGCTCCAAACGAGAACTTCAGGCCATCCTGGTGCAACGGGGGTC
TTCTCGAAGCAATGACTGTGCAATTATGTAA
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protein sequence of NO02G04880.1

>NO02G04880.1-protein ID=NO02G04880.1-protein|Name=NO02G04880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MVKFGEALSAFIKFLAGPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGL
HEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIET
YERSKRELQAILVQRGSSRSNDCAIM*
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Synonyms
Publications