NO02G04880.1, NO02G04880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04880.1
Unique NameNO02G04880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length381
Alignment locationchr2:1316724..1317104 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1316724..1317104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G04880.1 vs.
Match: EWM30194.1 (hypothetical protein Naga_100090g5 [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 3.100e-47
Identity = 94/126 (74.60%), Postives = 107/126 (84.92%), Query Frame = 0
Query:    1 MVKFGEALSAFIKFLAGPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGLHEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIETYERSKRELQAILVQRGSSRSNDCAIM 127
            MVK G A++A  KFL  PTY+ NDYELAIK SK+LEHLLE EWGA GKGLHEKI+WVQ S SPLP+DLMRRMRFLATIRNKLIHD+ +T+IE+R++FIET+ERSKREL AILVQRG     DCAIM
Sbjct:    1 MVKLGGAIAAIFKFLTSPTYAKNDYELAIKTSKDLEHLLEQEWGADGKGLHEKITWVQHSDSPLPDDLMRRMRFLATIRNKLIHDITYTRIEDRARFIETFERSKRELHAILVQRGKKPGPDCAIM 126          
The following BLAST results are available for this feature:
BLAST of NO02G04880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30194.13.100e-4774.60hypothetical protein Naga_100090g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04880NO02G04880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04880.1NO02G04880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04880.1.cds1NO02G04880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04880.1 ID=NO02G04880.1|Name=NO02G04880.1|organism=Nannochloropsis oceanica|type=mRNA|length=381bp
ATGGTCAAATTCGGAGAGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGG
GCCAACCTACTCCAGCAATGACTACGAACTTGCCATCAAGGCAAGCAAGA
ATCTAGAACATTTATTGGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTG
CACGAGAAAATCTCCTGGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGA
CCTGATGCGTAGGATGCGTTTCCTCGCCACAATCCGCAACAAACTCATTC
ACGATGTGGAATTTACAAAGATTGAGAATCGCAGCAAGTTTATTGAGACG
TACGAACGCTCCAAACGAGAACTTCAGGCCATCCTGGTGCAACGGGGGTC
TTCTCGAAGCAATGACTGTGCAATTATGTAA
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protein sequence of NO02G04880.1

>NO02G04880.1-protein ID=NO02G04880.1-protein|Name=NO02G04880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MVKFGEALSAFIKFLAGPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGL
HEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIET
YERSKRELQAILVQRGSSRSNDCAIM*
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mRNA from alignment at chr2:1316724..1317104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04880.1 ID=NO02G04880.1|Name=NO02G04880.1|organism=Nannochloropsis oceanica|type=mRNA|length=381bp|location=Sequence derived from alignment at chr2:1316724..1317104+ (Nannochloropsis oceanica)
ATGGTCAAATTCGGAGAGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGG GCCAACCTACTCCAGCAATGACTACGAACTTGCCATCAAGGCAAGCAAGA ATCTAGAACATTTATTGGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTG CACGAGAAAATCTCCTGGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGA CCTGATGCGTAGGATGCGTTTCCTCGCCACAATCCGCAACAAACTCATTC ACGATGTGGAATTTACAAAGATTGAGAATCGCAGCAAGTTTATTGAGACG TACGAACGCTCCAAACGAGAACTTCAGGCCATCCTGGTGCAACGGGGGTC TTCTCGAAGCAATGACTGTGCAATTATGTAA
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Coding sequence (CDS) from alignment at chr2:1316724..1317104+

>NO02G04880.1 ID=NO02G04880.1|Name=NO02G04880.1|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at chr2:1316724..1317104+ (Nannochloropsis oceanica)
ATGGTCAAATTCGGAGAGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGG
GCCAACCTACTCCAGCAATGACTACGAACTTGCCATCAAGGCAAGCAAGA
ATCTAGAACATTTATTGGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTG
CACGAGAAAATCTCCTGGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGA
CCTGATGCGTAGGATGCGTTTCCTCGCCACAATCCGCAACAAACTCATTC
ACGATGTGGAATTTACAAAGATTGAGAATCGCAGCAAGTTTATTGAGACG
TACGAACGCTCCAAACGAGAACTTCAGGCCATCCTGGTGCAACGGGGGTC
TTCTCGAAGCAATGACTGTGCAATTATGTAA
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Synonyms
Publications