NO02G04870, NO02G04870 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04870
Unique Name	NO02G04870
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1306
Alignment location	chr2:1314848..1316153 -

Link to JBrowse

Properties


Property Name	Value
Description	NADH:ubiquinone oxidoreductase intermediate-associated protein 30

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1314848..1316153 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008979	Galactose-bd-like
IPR013857	NADH-UbQ_OxRdtase-assoc_prot30

Vocabulary: **Biological Process**
Term	Definition
GO:0032981	mitochondrial respiratory chain complex I assembly

Homology

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BLAST of NO02G04870 vs. NCBI_GenBank
Match: EWM30188.1 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [Nannochloropsis gaditana])

HSP 1 Score: 290.0 bits (741), Expect = 7.600e-75
Identity = 150/232 (64.66%), Postives = 175/232 (75.43%), Query Frame = 0

Query:    1 MWGRVKELFRIPKLA-GIGAEKAPLPILAANTLGAGGTPTKLKWTVLTDCSIGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKVEGRP 232
            M   +KELFRIP L  G+   KAPLPIL+   L    + +KLKW+V TD SIGGKS+ SFEV   G+    E D   G     E R P A FSG LS +RP+ DP VKRTGY A+K+ MPR+ ++E YEGLEL+VRTDGR+Y+TNLEV+SFFPDELYQGYITGLP GQW TIQLPF+DMTLTRLGR+SYIQKELDSTF LESIGFL+ADGK GPF LEI  V AVG+++ RP
Sbjct:    1 MLRHIKELFRIPALQNGVAINKAPLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTG-----EIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRP 227

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BLAST of NO02G04870 vs. NCBI_GenBank
Match: XP_005853461.1 (hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526] >EKU22898.1 hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.5 bits (332), Expect = 2.000e-27
Identity = 71/131 (54.20%), Postives = 87/131 (66.41%), Query Frame = 0

Query:   22 APLPILAANTLGAGGTPTKLKWTVLTDCSIGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFP 153
            APLPIL+   L    + +KLKW+V TD SIGGKS+ SFEV   G+    E D   G     E R P A FSG LS +RP+ DP VKRTGY A+K+ MPR+ ++E YEGLEL+VRTDGR+Y+TNLE     P
Sbjct:  335 APLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTG-----EIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEPHHILP 460

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: XP_012198512.1 (hypothetical protein SPRG_04716 [Saprolegnia parasitica CBS 223.65] >KDO30815.1 hypothetical protein SPRG_04716 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 118.2 bits (295), Expect = 4.000e-23
Identity = 66/186 (35.48%), Postives = 100/186 (53.76%), Query Frame = 0

Query:   43 WTVLTDCSIGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKVE 229
            W V +D +IGG+S  SFE +P  D +++E             ++  AVFSG+LS      +  V R+GY A++  +PR L +  YEGL + ++TDGR Y  N + D + P +LY G++   PA +W   +L F D  LT  G +           +L +IG  +AD K GPF++ I  + AV KV+
Sbjct:   49 WLVSSDRAIGGESTCSFEFVPTADDSDKEAP-----------KVGAAVFSGRLSLSVQPTEQHVVRSGYCAIRGNVPRGLHLHGYEGLAMRIKTDGRTYRINAQADGWNPHDLYMGFLKA-PANKWVEAELAFSDFILTSRGYVQVDDPAKLDPSSLRTIGIALADDKEGPFQISIEWIKAVEKVD 222

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: XP_008611674.1 (hypothetical protein SDRG_07607 [Saprolegnia diclina VS20] >EQC34802.1 hypothetical protein SDRG_07607 [Saprolegnia diclina VS20])

HSP 1 Score: 117.1 bits (292), Expect = 8.800e-23
Identity = 65/186 (34.95%), Postives = 98/186 (52.69%), Query Frame = 0

Query:   43 WTVLTDCSIGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKVE 229
            W + +D +IGG+S  +FE +P  D +E           K   ++  AVFSG+LS      +  V R+GY A++  +PR L +  YEGL + ++TDGR Y  N + D + P +LY G++   PA +W   +L F D  LT  G +           +L +IG  +AD K GPF+  I  + AV KV+
Sbjct:   49 WLISSDRAIGGESTCAFEFVPTADDSE-----------KDSPKVGAAVFSGRLSLSVQPTEQHVVRSGYCAIRGNVPRGLHLHGYEGLAMRIKTDGRTYRINAQADGWNPHDLYMGFLKA-PANEWVEAELAFSDFILTSRGYVQVDDPAKLDPSSLRTIGIALADDKEGPFKFAIEWIKAVEKVD 222

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: OWZ08007.1 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [Phytophthora megakarya])

HSP 1 Score: 115.5 bits (288), Expect = 2.600e-22
Identity = 71/189 (37.57%), Postives = 106/189 (56.08%), Query Frame = 0

Query:   43 WTVLTDCSIGGKSK---GSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSY-IQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKV 228
            WT  +D SIGG S+   G ++     +A +E+         K +  +P AVFSG+LS      +  V R+GY AV+  +P+ L +  YEG+ + + TDGR Y  N++++S+ P  LY G+I   PA +W  I LPFRD  LT  G +    + ELD +  L+S+GF +AD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECQWGFYKGTKEQEATKEKPSTRLIHYVKNQDNVPSAVFSGRLSMDCQPTEVGVVRSGYCAVRASVPQELLLHGYEGITMRIMTDGREYRMNVQMESWNPFNLYMGFIR-TPANEWVDITLPFRDFLLTAKGFVKLDDETELDPS-KLKSVGFAIADQKEGEFELRIQWIKAVAQL 232

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: GAY00010.1 (Hypothetical protein PINS_007853 [Pythium insidiosum])

HSP 1 Score: 112.1 bits (279), Expect = 2.800e-21
Identity = 69/192 (35.94%), Postives = 94/192 (48.96%), Query Frame = 0

Query:   43 WTVLTDCSIGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERR----IPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKVEGR 231
            W   +D SIGG S+  +       AA   +  G  A    +       P AVFSG+LS      +  V R+GY AV+  +PR + +  YEGL + V TDGR Y  N ++D + P  LY G+I   P  +W  ++LPFRD  LT  G   Y          L SIG  +AD K G F + +  + A+ KVE R
Sbjct:   46 WVASSDRSIGGLSECRWRFYDPKKAAASRDSSGSAAEPTVQVNQADDQPSAVFSGRLSLACQPTEVGVVRSGYCAVRGSIPRDMLLHGYEGLTMRVMTDGREYRLNAQMDGWNPLNLYMGFIR-TPPNEWVDVELPFRDFLLTTKGYYKYDDPTPLDPGKLRSIGIAIADQKEGDFEIRVQWIKAIAKVESR 236

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: XP_008896918.1 (hypothetical protein PPTG_05171 [Phytophthora parasitica INRA-310] >ETN17349.1 hypothetical protein PPTG_05171 [Phytophthora parasitica INRA-310])

HSP 1 Score: 108.6 bits (270), Expect = 3.100e-20
Identity = 67/190 (35.26%), Postives = 101/190 (53.16%), Query Frame = 0

Query:   43 WTVLTDCSIGGKSKGSFEVLPAGDAAEEEEDVGGGAM----TKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSY-IQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKV 228
            WT  +D SIGG S+  +         E  ED           K +  +P AVF+G+LS      +  V R+GY AV+  +P+ L +  YEG+ + + TDGR Y  N++++S+ P  L+ G+I   P  +W  + LPFRD  LT  G +    + ELD +  L+S+GF +AD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECKWGFYKGEQTEETTEDEQTSKRLIHHVKNQDNVPSAVFTGRLSMDCQPTEVGVVRSGYCAVRASVPQELLLHGYEGIAMRIMTDGREYRMNVQMESWNPFNLHMGFIR-TPPNEWVDVTLPFRDFLLTAKGFVKLGDETELDPS-KLKSVGFAIADQKEGDFELRIQWIKAVAQL 233

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: POM64088.1 (Complex I intermediate-associated protein 30, mitochondrial precursor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 108.6 bits (270), Expect = 3.100e-20
Identity = 67/189 (35.45%), Postives = 101/189 (53.44%), Query Frame = 0

Query:   43 WTVLTDCSIGGKSK---GSFEVLPAGDAAEEEEDVGGGA-MTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKV 228
            WT  +D SIGG S+   G ++     +  EEE+         K    +P AVF+G+LS      +  V R+GY AV+  +P+ L +  YEG+ + + TDGR Y  N++++S+ P  LY G+I   P  +W  I LPFRD  LT  G +    + +     L+S+GF +AD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECKWGFYKGTEEKETTEEEKTSKRLIHQVKNLDNVPSAVFTGRLSMDCQPTEVGVVRSGYCAVRASVPQDLLLHGYEGITMRIMTDGREYRMNVQMESWNPFNLYMGFIR-TPPNEWVDITLPFRDFLLTAKGFVKLDDETVLDPSKLKSVGFAIADQKEGDFELRIQWIKAVAQL 233

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: KUF83950.1 (complex I intermediate-associated protein 30 [Phytophthora nicotianae])

HSP 1 Score: 108.2 bits (269), Expect = 4.100e-20
Identity = 68/190 (35.79%), Postives = 104/190 (54.74%), Query Frame = 0

Query:   43 WTVLTDCSIGGKS--KGSFEVLPAGDAAEEEEDVGGGAM--TKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSY-IQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKV 228
            WT  +D SIGG S  K  F      +   E+E +    +   K +  +P AVF+G+LS      +  V R+GY AV+  +P+ L +  YEG+ + + TDGR Y  N++++S+ P  L+ G+I   P  +W  + LPFRD  LT  G +    + ELD +  L+S+GF +AD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECKWGFYKGEQTEETTEDEQISKRLIHHVKNQDNVPSAVFTGRLSMDCQPTEVGVVRSGYCAVRASVPQELLLHGYEGIAMRIMTDGREYRMNVQMESWNPFXLHMGFIR-TPPNEWVDVTLPFRDFLLTAKGFVKLGDETELDPS-KLKSVGFAIADQKEGDFELRIQWIKAVAQL 233

[Close]

BLAST of NO02G04870 vs. NCBI_GenBank
Match: POM66493.1 (Complex I intermediate-associated protein 30, mitochondrial precursor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 108.2 bits (269), Expect = 4.100e-20
Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 0

Query:   43 WTVLTDCSIGGKSK---GSFEVLPAGDAAEEEEDVGGGA-MTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSY-IQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKV 228
            WT  +D SIGG S+   G ++     +  EEE+         K    +P AVF+G+LS      +  V R+GY AV+  +P+ L +  YEG+ + + TDGR Y  N++++S+ P  LY G+I   P  +W  I LPFRD  LT  G +    + ELD +  L+S+GF +AD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECKWGFYKGTEEKETTEEEKTSKRLIHQVKNLDNVPSAVFTGRLSMDCQPTEVGVVRSGYCAVRASVPQDLLLHGYEGITMRIMTDGREYRMNVQMESWNPFNLYMGFIR-TPPNEWVDITLPFRDFLLTAKGFVKLDDETELDPS-KLKSVGFAIADQKEGDFELRIQWIKAVAQL 233

The following BLAST results are available for this feature:

BLAST of NO02G04870 vs. NCBI_GenBank

BLAST of NO02G04870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30188.1	7.600e-75	64.66	NADH:ubiquinone oxidoreductase intermediate-associ...	[more]
XP_005853461.1	2.000e-27	54.20	hypothetical protein NGA_0456400, partial [Nannoch...	[more]
XP_012198512.1	4.000e-23	35.48	hypothetical protein SPRG_04716 [Saprolegnia paras...	[more]
XP_008611674.1	8.800e-23	34.95	hypothetical protein SDRG_07607 [Saprolegnia dicli...	[more]
OWZ08007.1	2.600e-22	37.57	NADH:ubiquinone oxidoreductase intermediate-associ...	[more]
GAY00010.1	2.800e-21	35.94	Hypothetical protein PINS_007853 [Pythium insidios...	[more]
XP_008896918.1	3.100e-20	35.26	hypothetical protein PPTG_05171 [Phytophthora para...	[more]
POM64088.1	3.100e-20	35.45	Complex I intermediate-associated protein 30, mito...	[more]
KUF83950.1	4.100e-20	35.79	complex I intermediate-associated protein 30 [Phyt...	[more]
POM66493.1	4.100e-20	36.84	Complex I intermediate-associated protein 30, mito...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007166	NSK007166	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G04870.1	NO02G04870.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575250	gene_1081	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100090g6	gene470	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G04870.1	NO02G04870.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G04870 ID=NO02G04870|Name=NO02G04870|organism=Nannochloropsis oceanica|type=gene|length=1306bp
ATGTGGGGCCGGGTCAAGGAGCTCTTTCGCATCCCAAAGTTGGCTGGTAT
TGGTGCCGAGAAAGgtaagcagcccaagggcttcacgatatttctgcttg
gactgtcataatgttgaataatagactgcagcctgctctcaacataccct
tatgtcacaatctcccactcccattcccccactcttctcttgtagCACCA
CTCCCCATCTTAGCAGCCAACACCCTGGGTGCTGGAGGCACACCAACCAA
GCTAAAATGGACCGTGTTGACAGACTGCAGCATCGGGGGCAAATCCAAGG
GGTCGTTCGAAGTGCTGCCAGCCGGAGACGCTGCGGAAGAGGAGGAGGAC
GTCGGTGGTGGGGCAATGACGAAGACAGAGAGGAGAATACCCCTTGCAGT
CTTTTCCGGCCAGCTTTCAACCTTACGGCCTTCAATGGACCCCAAgtaag
ttgtttggtgtctaatccgtttttgggcctcgtttttgggccggtggcct
cgtccccgtcccgcgcaacgcgcaagtttggcgttcagagcgacacgtac
acgcataagttcccaccaacgaaattcaattcacgcctctctgccttcaa
cttatctctacaccctctgtatcgtagAGTAAAGCGCACGGGGTACTCCG
CCGTAAAAATCATCATGCCCCGGGCCTTAAAAATCGAGAATTACGAGGGC
CTCGAGCTTTCTGTCCGCACAGATGGACGGAACTACGTAACTAATCTTGA
Ggtagttagagcctgcctagctttatacgacaatcatgtgattatcattc
atgcgagaatggacgcgtcccattgtaccaaataaagagtacggcgtagc
ctttcgcgccaatcaaacacgtctcaccctcccatcatcctttcccccca
cctacagGTGGACAGCTTCTTCCCCGACGAGCTCTACCAAGGGTACATAA
CAGGACTACCTGCAGGGCAGTGGTGGACGATCCAGTTACCTTTCAGAGAC
ATGACCTTGACGCGTTTGGGGCGGTTGTCGTACATCCAAAAGGAGCTTGA
CTCAACGTTTGCCTTGGAATCGATTGGCTTCTTGGTGGCGGATGGAAAAC
CGGGCCCTTTTCGCTTGGAGATCGGCGGGGTGAACGCTGTGGGGAAGGTT
GAAGGGCGGCCGTTCGACGCGACAGTCGGAGGCGGGGACGATGGTGCTGG
GAGCAGTAAAGCGGATGAAGAAATGCGGGAGGAAATGCAAGTGGAAGAGG
GGGTGGAGAGGGAGGCGGGGAGGAGAAGCAAGGGGGAAAATCAAGGGCCG
GATTAG

protein sequence of NO02G04870.1

>NO02G04870.1-protein ID=NO02G04870.1-protein|Name=NO02G04870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MWGRVKELFRIPKLAGIGAEKAPLPILAANTLGAGGTPTKLKWTVLTDCS
IGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRP
SMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSF
FPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALE
SIGFLVADGKPGPFRLEIGGVNAVGKVEGRPFDATVGGGDDGAGSSKADE
EMREEMQVEEGVEREAGRRSKGENQGPD*

Synonyms

Publications