NO02G04870.1, NO02G04870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04870.1
Unique NameNO02G04870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr2:1314848..1316153 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1314848..1316153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04870.1 vs.
Match: EWM30188.1 (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [Nannochloropsis gaditana])

HSP 1 Score: 287.3 bits (734), Expect = 4.900e-74
Identity = 161/272 (59.19%), Postives = 191/272 (70.22%), Query Frame = 0 
Query:    1 MWGRVKELFRIPKLA-GIGAEKAPLPILAANTLGAGGTPTKLKWTVLTDCSIGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRPSMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSFFPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALESIGFLVADGKPGPFRLEIGGVNAVGKVEGRPFDATVGGGDDGAGSSKADEEMREEMQVEEGVEREAGRRSK 272
            M   +KELFRIP L  G+   KAPLPIL+   L    + +KLKW+V TD SIGGKS+ SFEV   G+    E D   G     E R P A FSG LS +RP+ DP VKRTGY A+K+ MPR+ ++E YEGLEL+VRTDGR+Y+TNLEV+SFFPDELYQGYITGLP GQW TIQLPF+DMTLTRLGR+SYIQKELDSTF LESIGFL+ADGK GPF LEI  V AVG+++ RP         DG G  K   E R    +EE  +++ G RS+
Sbjct:    1 MLRHIKELFRIPALQNGVAINKAPLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTG-----EIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRPLRKP--SMSDGNGLKK---EKRAGTNLEE--DKKTGARSE 260
The following BLAST results are available for this feature:
BLAST of NO02G04870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30188.14.900e-7459.19NADH:ubiquinone oxidoreductase intermediate-associ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04870NO02G04870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04870.1NO02G04870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04870.1.cds1NO02G04870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04870.1.cds2NO02G04870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04870.1.cds3NO02G04870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04870.1.cds4NO02G04870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04870.1 ID=NO02G04870.1|Name=NO02G04870.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGTGGGGCCGGGTCAAGGAGCTCTTTCGCATCCCAAAGTTGGCTGGTAT
TGGTGCCGAGAAAGCACCACTCCCCATCTTAGCAGCCAACACCCTGGGTG
CTGGAGGCACACCAACCAAGCTAAAATGGACCGTGTTGACAGACTGCAGC
ATCGGGGGCAAATCCAAGGGGTCGTTCGAAGTGCTGCCAGCCGGAGACGC
TGCGGAAGAGGAGGAGGACGTCGGTGGTGGGGCAATGACGAAGACAGAGA
GGAGAATACCCCTTGCAGTCTTTTCCGGCCAGCTTTCAACCTTACGGCCT
TCAATGGACCCCAAAGTAAAGCGCACGGGGTACTCCGCCGTAAAAATCAT
CATGCCCCGGGCCTTAAAAATCGAGAATTACGAGGGCCTCGAGCTTTCTG
TCCGCACAGATGGACGGAACTACGTAACTAATCTTGAGGTGGACAGCTTC
TTCCCCGACGAGCTCTACCAAGGGTACATAACAGGACTACCTGCAGGGCA
GTGGTGGACGATCCAGTTACCTTTCAGAGACATGACCTTGACGCGTTTGG
GGCGGTTGTCGTACATCCAAAAGGAGCTTGACTCAACGTTTGCCTTGGAA
TCGATTGGCTTCTTGGTGGCGGATGGAAAACCGGGCCCTTTTCGCTTGGA
GATCGGCGGGGTGAACGCTGTGGGGAAGGTTGAAGGGCGGCCGTTCGACG
CGACAGTCGGAGGCGGGGACGATGGTGCTGGGAGCAGTAAAGCGGATGAA
GAAATGCGGGAGGAAATGCAAGTGGAAGAGGGGGTGGAGAGGGAGGCGGG
GAGGAGAAGCAAGGGGGAAAATCAAGGGCCGGATTAG
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protein sequence of NO02G04870.1

>NO02G04870.1-protein ID=NO02G04870.1-protein|Name=NO02G04870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MWGRVKELFRIPKLAGIGAEKAPLPILAANTLGAGGTPTKLKWTVLTDCS
IGGKSKGSFEVLPAGDAAEEEEDVGGGAMTKTERRIPLAVFSGQLSTLRP
SMDPKVKRTGYSAVKIIMPRALKIENYEGLELSVRTDGRNYVTNLEVDSF
FPDELYQGYITGLPAGQWWTIQLPFRDMTLTRLGRLSYIQKELDSTFALE
SIGFLVADGKPGPFRLEIGGVNAVGKVEGRPFDATVGGGDDGAGSSKADE
EMREEMQVEEGVEREAGRRSKGENQGPD*
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mRNA from alignment at chr2:1314848..1316153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04870.1 ID=NO02G04870.1|Name=NO02G04870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp|location=Sequence derived from alignment at chr2:1314848..1316153- (Nannochloropsis oceanica)
ATGTGGGGCCGGGTCAAGGAGCTCTTTCGCATCCCAAAGTTGGCTGGTAT
TGGTGCCGAGAAAGGTAAGCAGCCCAAGGGCTTCACGATATTTCTGCTTG
GACTGTCATAATGTTGAATAATAGACTGCAGCCTGCTCTCAACATACCCT
TATGTCACAATCTCCCACTCCCATTCCCCCACTCTTCTCTTGTAGCACCA
CTCCCCATCTTAGCAGCCAACACCCTGGGTGCTGGAGGCACACCAACCAA
GCTAAAATGGACCGTGTTGACAGACTGCAGCATCGGGGGCAAATCCAAGG
GGTCGTTCGAAGTGCTGCCAGCCGGAGACGCTGCGGAAGAGGAGGAGGAC
GTCGGTGGTGGGGCAATGACGAAGACAGAGAGGAGAATACCCCTTGCAGT
CTTTTCCGGCCAGCTTTCAACCTTACGGCCTTCAATGGACCCCAAGTAAG
TTGTTTGGTGTCTAATCCGTTTTTGGGCCTCGTTTTTGGGCCGGTGGCCT
CGTCCCCGTCCCGCGCAACGCGCAAGTTTGGCGTTCAGAGCGACACGTAC
ACGCATAAGTTCCCACCAACGAAATTCAATTCACGCCTCTCTGCCTTCAA
CTTATCTCTACACCCTCTGTATCGTAGAGTAAAGCGCACGGGGTACTCCG
CCGTAAAAATCATCATGCCCCGGGCCTTAAAAATCGAGAATTACGAGGGC
CTCGAGCTTTCTGTCCGCACAGATGGACGGAACTACGTAACTAATCTTGA
GGTAGTTAGAGCCTGCCTAGCTTTATACGACAATCATGTGATTATCATTC
ATGCGAGAATGGACGCGTCCCATTGTACCAAATAAAGAGTACGGCGTAGC
CTTTCGCGCCAATCAAACACGTCTCACCCTCCCATCATCCTTTCCCCCCA
CCTACAGGTGGACAGCTTCTTCCCCGACGAGCTCTACCAAGGGTACATAA
CAGGACTACCTGCAGGGCAGTGGTGGACGATCCAGTTACCTTTCAGAGAC
ATGACCTTGACGCGTTTGGGGCGGTTGTCGTACATCCAAAAGGAGCTTGA
CTCAACGTTTGCCTTGGAATCGATTGGCTTCTTGGTGGCGGATGGAAAAC
CGGGCCCTTTTCGCTTGGAGATCGGCGGGGTGAACGCTGTGGGGAAGGTT
GAAGGGCGGCCGTTCGACGCGACAGTCGGAGGCGGGGACGATGGTGCTGG
GAGCAGTAAAGCGGATGAAGAAATGCGGGAGGAAATGCAAGTGGAAGAGG
GGGTGGAGAGGGAGGCGGGGAGGAGAAGCAAGGGGGAAAATCAAGGGCCG
GATTAG
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Coding sequence (CDS) from alignment at chr2:1314848..1316153-

>NO02G04870.1 ID=NO02G04870.1|Name=NO02G04870.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr2:1314848..1316153- (Nannochloropsis oceanica)
ATGTGGGGCCGGGTCAAGGAGCTCTTTCGCATCCCAAAGTTGGCTGGTAT
TGGTGCCGAGAAAGCACCACTCCCCATCTTAGCAGCCAACACCCTGGGTG
CTGGAGGCACACCAACCAAGCTAAAATGGACCGTGTTGACAGACTGCAGC
ATCGGGGGCAAATCCAAGGGGTCGTTCGAAGTGCTGCCAGCCGGAGACGC
TGCGGAAGAGGAGGAGGACGTCGGTGGTGGGGCAATGACGAAGACAGAGA
GGAGAATACCCCTTGCAGTCTTTTCCGGCCAGCTTTCAACCTTACGGCCT
TCAATGGACCCCAAAGTAAAGCGCACGGGGTACTCCGCCGTAAAAATCAT
CATGCCCCGGGCCTTAAAAATCGAGAATTACGAGGGCCTCGAGCTTTCTG
TCCGCACAGATGGACGGAACTACGTAACTAATCTTGAGGTGGACAGCTTC
TTCCCCGACGAGCTCTACCAAGGGTACATAACAGGACTACCTGCAGGGCA
GTGGTGGACGATCCAGTTACCTTTCAGAGACATGACCTTGACGCGTTTGG
GGCGGTTGTCGTACATCCAAAAGGAGCTTGACTCAACGTTTGCCTTGGAA
TCGATTGGCTTCTTGGTGGCGGATGGAAAACCGGGCCCTTTTCGCTTGGA
GATCGGCGGGGTGAACGCTGTGGGGAAGGTTGAAGGGCGGCCGTTCGACG
CGACAGTCGGAGGCGGGGACGATGGTGCTGGGAGCAGTAAAGCGGATGAA
GAAATGCGGGAGGAAATGCAAGTGGAAGAGGGGGTGGAGAGGGAGGCGGG
GAGGAGAAGCAAGGGGGAAAATCAAGGGCCGGATTAG
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Synonyms
Publications