NO02G04850, NO02G04850 (gene) Nannochloropsis oceanica

Overview
NameNO02G04850
Unique NameNO02G04850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1584
Alignment locationchr2:1310323..1311906 -

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidoglycan-binding lysin domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1310323..1311906 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
Homology
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BLAST of NO02G04850 vs. NCBI_GenBank
Match: EWM30180.1 (Peptidoglycan-binding lysin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 84.7 bits (208), Expect = 3.600e-13
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0 
Query:   14 LAFPVMYRCLLLANSEGEICGVRLGLGH--NGHSVVSEVLSESVQELCQVAEGDILTHIDGVTV----LGGRHRDRRQGKGWEGKGG 95
            L FPV+YRCLLLA+ EGE+CGVRLG G       +VSE++SESVQE+CQ+ +GDI+TH++G  V    L  R   RR     EG  G
Sbjct:   72 LVFPVLYRCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAG 158
[Close]
BLAST of NO02G04850 vs. NCBI_GenBank
Match: EWM30181.1 (Peptidoglycan-binding lysin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 0 
Query:   21 RCLLLANSEGEICGVRLGLGH--NGHSVVSEVLSESVQELCQVAEGDILTHIDGVTV----LGGRHRDRRQGKGWEGKGG 95
            RCLLLA+ EGE+CGVRLG G       +VSE++SESVQE+CQ+ +GDI+TH++G  V    L  R   RR     EG  G
Sbjct:   21 RCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAG 100
The following BLAST results are available for this feature:
BLAST of NO02G04850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30180.13.600e-1352.87Peptidoglycan-binding lysin domain protein [Nannoc... [more]
EWM30181.11.100e-951.25Peptidoglycan-binding lysin domain protein [Nannoc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007163NSK007163Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04850.1NO02G04850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|150670gene_1079Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100090g7gene469Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04850.1NO02G04850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04850 ID=NO02G04850|Name=NO02G04850|organism=Nannochloropsis oceanica|type=gene|length=1584bp
ACAGGCTCGTCCGCGCAAGTCTTCGCACTTGAATCATAGAAGCAGCAGCT
GCAGCCGCCGCAGCACGAAGACTCGTCAACTCCGCAATTCGGACCTGTAC
TGGCAGGCGAAGAAAAGCTGGCGACCATATCATCAACACGTAGCTATGGC
ACATTTCTACCACTCCTCTCTTCTTCCTGGGAGGACAACGTCATGGCTGC
CTCTTCGCCTCCCCCTCTCTCGATGAAAAGCCTGGCCTTCCCCGTCATGT
ACAGgtgagtacatgagcgaatagaggcagacggtagagggtaaaacctc
tcataccacatgctggctcattaattctcatccgtttcgttcttttcggt
acaccaaatcagtatgcttagctgaagttttgaaaggaaccgcagaagag
gggaggagatagtcaggcggtatttgatggatgttccccgcgtgtgtgtc
tttcccagatgttttgattaaagaagggcacttcccccttgcttctgtcc
ctgcatgatcatgtatgagtcctgctgggcctgttagatggatctcttcg
atatgcgtgggaaacctttttctccatttacaaacccgctatagcttcta
ttcacttctcctctctttcactctcccgctggaacgtccttcagATGTCT
CCTTCTTGCGAACAGCGAAGGTGAAATCTGCGGTGTCCGACTCGGGCTTG
GCCATAATGGGCATTCAGTCGTGTCTGAGGTCCTGAGTGAAAGTGTGCAA
GAATTGTGCCAAGTTGCCGAAGGTGATATCCTGACTCACATAGACGGGGT
GACTGTCTTGGGTGGTAGACATCGGGATCGGAGACAGGGAAAAGGGTGGG
AAGGAAAGGGAGGAGGAGTGGGGGGGGTCACTGCACGTCTGACCGTAGAG
GAGTTATTGCAGAGACAGCAGGTGCCTTACACCCGTCAAAGAATGAACAA
GTCCTCCCTACACCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCC
ACCACCACCACCACCAACACCGACAGTACCAGCATCATCCCTCATACTCC
CCCCCCCCTCTTCTGTCATCGAACTTCGTCTCATCCGTGCCAGCAGTCTG
CCCAAATCTTCCACCTTCTCCCCTTCATTCTCCACCGCCTCCTCCCCTCC
CACCCCGTTTCGTCACCTCCCCGTTTATTATTACGAAACGCATCCCAAGG
ACACCTTAGAGAGTATTGCCCAATTTTTCCACATCTCCCCTCAAGACATA
AGGCGGAATAACCGGGACTATTTCCCCTCAGGCGAAAAAGCGGGAGGGAT
TCACCCGGGGATTTTGTTAAAGATACCGAACCCGACGTTTTTTGAGGAGG
AAGGGAGGGAGGATGAGGTAGGATGGAAGGAGGAATACGTGGAAGAGGAG
GAAGAGGACGAAGGCTCGTCATCGTTGTTGGCCTCCTCCCTATCCTCTTC
TTCCCCCTCCTCCTCCTCCTCTGCTTGCTCCTCCAGATGGCACAACGCAA
GGGCCGGCGTTTCGCCAACAAGCCAAAGAGTCGTTCCATCCTCCTCTTTC
ATCCTCCCTCGCACACCCCCTTCCACCCCGCCAT
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protein sequence of NO02G04850.1

>NO02G04850.1-protein ID=NO02G04850.1-protein|Name=NO02G04850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MAASSPPPLSMKSLAFPVMYRCLLLANSEGEICGVRLGLGHNGHSVVSEV
LSESVQELCQVAEGDILTHIDGVTVLGGRHRDRRQGKGWEGKGGGVGGVT
ARLTVEELLQRQQVPYTRQRMNKSSLHPQQQQQQQQQQRHHHHHQHRQYQ
HHPSYSPPPLLSSNFVSSVPAVCPNLPPSPLHSPPPPPLPPRFVTSPFII
TKRIPRTP*
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Synonyms
Publications