NO02G04850.1, NO02G04850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04850.1
Unique NameNO02G04850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr2:1310323..1311906 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1310323..1311906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04850.1 vs.
Match: EWM30180.1 (Peptidoglycan-binding lysin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 84.7 bits (208), Expect = 3.600e-13
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0 
Query:   14 LAFPVMYRCLLLANSEGEICGVRLGLGH--NGHSVVSEVLSESVQELCQVAEGDILTHIDGVTV----LGGRHRDRRQGKGWEGKGG 95
            L FPV+YRCLLLA+ EGE+CGVRLG G       +VSE++SESVQE+CQ+ +GDI+TH++G  V    L  R   RR     EG  G
Sbjct:   72 LVFPVLYRCLLLADREGELCGVRLGSGRRPGEQLIVSEIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAG 158
The following BLAST results are available for this feature:
BLAST of NO02G04850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30180.13.600e-1352.87Peptidoglycan-binding lysin domain protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04850NO02G04850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04850.1NO02G04850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04850.1.cds1NO02G04850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04850.1.cds2NO02G04850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04850.1 ID=NO02G04850.1|Name=NO02G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ACAGGCTCGTCCGCGCAAGTCTTCGCACTTGAATCATAGAAGCAGCAGCT
GCAGCCGCCGCAGCACGAAGACTCGTCAACTCCGCAATTCGGACCTGTAC
TGGCAGGCGAAGAAAAGCTGGCGACCATATCATCAACACGTAGCTATGGC
ACATTTCTACCACTCCTCTCTTCTTCCTGGGAGGACAACGTCATGGCTGC
CTCTTCGCCTCCCCCTCTCTCGATGAAAAGCCTGGCCTTCCCCGTCATGT
ACAGATGTCTCCTTCTTGCGAACAGCGAAGGTGAAATCTGCGGTGTCCGA
CTCGGGCTTGGCCATAATGGGCATTCAGTCGTGTCTGAGGTCCTGAGTGA
AAGTGTGCAAGAATTGTGCCAAGTTGCCGAAGGTGATATCCTGACTCACA
TAGACGGGGTGACTGTCTTGGGTGGTAGACATCGGGATCGGAGACAGGGA
AAAGGGTGGGAAGGAAAGGGAGGAGGAGTGGGGGGGGTCACTGCACGTCT
GACCGTAGAGGAGTTATTGCAGAGACAGCAGGTGCCTTACACCCGTCAAA
GAATGAACAAGTCCTCCCTACACCCGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGCCACCACCACCACCACCAACACCGACAGTACCAGCATCATCC
CTCATACTCCCCCCCCCCTCTTCTGTCATCGAACTTCGTCTCATCCGTGC
CAGCAGTCTGCCCAAATCTTCCACCTTCTCCCCTTCATTCTCCACCGCCT
CCTCCCCTCCCACCCCGTTTCGTCACCTCCCCGTTTATTATTACGAAACG
CATCCCAAGGACACCTTAGAGAGTATTGCCCAATTTTTCCACATCTCCCC
TCAAGACATAAGGCGGAATAACCGGGACTATTTCCCCTCAGGCGAAAAAG
CGGGAGGGATTCACCCGGGGATTTTGTTAAAGATACCGAACCCGACGTTT
TTTGAGGAGGAAGGGAGGGAGGATGAGGTAGGATGGAAGGAGGAATACGT
GGAAGAGGAGGAAGAGGACGAAGGCTCGTCATCGTTGTTGGCCTCCTCCC
TATCCTCTTCTTCCCCCTCCTCCTCCTCCTCTGCTTGCTCCTCCAGATGG
CACAACGCAAGGGCCGGCGTTTCGCCAACAAGCCAAAGAGTCGTTCCATC
CTCCTCTTTCATCCTCCCTCGCACACCCCCTTCCACCCCGCCAT
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protein sequence of NO02G04850.1

>NO02G04850.1-protein ID=NO02G04850.1-protein|Name=NO02G04850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MAASSPPPLSMKSLAFPVMYRCLLLANSEGEICGVRLGLGHNGHSVVSEV
LSESVQELCQVAEGDILTHIDGVTVLGGRHRDRRQGKGWEGKGGGVGGVT
ARLTVEELLQRQQVPYTRQRMNKSSLHPQQQQQQQQQQRHHHHHQHRQYQ
HHPSYSPPPLLSSNFVSSVPAVCPNLPPSPLHSPPPPPLPPRFVTSPFII
TKRIPRTP*
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mRNA from alignment at chr2:1310323..1311906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04850.1 ID=NO02G04850.1|Name=NO02G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp|location=Sequence derived from alignment at chr2:1310323..1311906- (Nannochloropsis oceanica)
ACAGGCTCGTCCGCGCAAGTCTTCGCACTTGAATCATAGAAGCAGCAGCT
GCAGCCGCCGCAGCACGAAGACTCGTCAACTCCGCAATTCGGACCTGTAC
TGGCAGGCGAAGAAAAGCTGGCGACCATATCATCAACACGTAGCTATGGC
ACATTTCTACCACTCCTCTCTTCTTCCTGGGAGGACAACGTCATGGCTGC
CTCTTCGCCTCCCCCTCTCTCGATGAAAAGCCTGGCCTTCCCCGTCATGT
ACAGGTGAGTACATGAGCGAATAGAGGCAGACGGTAGAGGGTAAAACCTC
TCATACCACATGCTGGCTCATTAATTCTCATCCGTTTCGTTCTTTTCGGT
ACACCAAATCAGTATGCTTAGCTGAAGTTTTGAAAGGAACCGCAGAAGAG
GGGAGGAGATAGTCAGGCGGTATTTGATGGATGTTCCCCGCGTGTGTGTC
TTTCCCAGATGTTTTGATTAAAGAAGGGCACTTCCCCCTTGCTTCTGTCC
CTGCATGATCATGTATGAGTCCTGCTGGGCCTGTTAGATGGATCTCTTCG
ATATGCGTGGGAAACCTTTTTCTCCATTTACAAACCCGCTATAGCTTCTA
TTCACTTCTCCTCTCTTTCACTCTCCCGCTGGAACGTCCTTCAGATGTCT
CCTTCTTGCGAACAGCGAAGGTGAAATCTGCGGTGTCCGACTCGGGCTTG
GCCATAATGGGCATTCAGTCGTGTCTGAGGTCCTGAGTGAAAGTGTGCAA
GAATTGTGCCAAGTTGCCGAAGGTGATATCCTGACTCACATAGACGGGGT
GACTGTCTTGGGTGGTAGACATCGGGATCGGAGACAGGGAAAAGGGTGGG
AAGGAAAGGGAGGAGGAGTGGGGGGGGTCACTGCACGTCTGACCGTAGAG
GAGTTATTGCAGAGACAGCAGGTGCCTTACACCCGTCAAAGAATGAACAA
GTCCTCCCTACACCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCC
ACCACCACCACCACCAACACCGACAGTACCAGCATCATCCCTCATACTCC
CCCCCCCCTCTTCTGTCATCGAACTTCGTCTCATCCGTGCCAGCAGTCTG
CCCAAATCTTCCACCTTCTCCCCTTCATTCTCCACCGCCTCCTCCCCTCC
CACCCCGTTTCGTCACCTCCCCGTTTATTATTACGAAACGCATCCCAAGG
ACACCTTAGAGAGTATTGCCCAATTTTTCCACATCTCCCCTCAAGACATA
AGGCGGAATAACCGGGACTATTTCCCCTCAGGCGAAAAAGCGGGAGGGAT
TCACCCGGGGATTTTGTTAAAGATACCGAACCCGACGTTTTTTGAGGAGG
AAGGGAGGGAGGATGAGGTAGGATGGAAGGAGGAATACGTGGAAGAGGAG
GAAGAGGACGAAGGCTCGTCATCGTTGTTGGCCTCCTCCCTATCCTCTTC
TTCCCCCTCCTCCTCCTCCTCTGCTTGCTCCTCCAGATGGCACAACGCAA
GGGCCGGCGTTTCGCCAACAAGCCAAAGAGTCGTTCCATCCTCCTCTTTC
ATCCTCCCTCGCACACCCCCTTCCACCCCGCCAT
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Coding sequence (CDS) from alignment at chr2:1310323..1311906-

>NO02G04850.1 ID=NO02G04850.1|Name=NO02G04850.1|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr2:1310323..1311906- (Nannochloropsis oceanica)
ATGGCTGCCTCTTCGCCTCCCCCTCTCTCGATGAAAAGCCTGGCCTTCCC
CGTCATGTACAGATGTCTCCTTCTTGCGAACAGCGAAGGTGAAATCTGCG
GTGTCCGACTCGGGCTTGGCCATAATGGGCATTCAGTCGTGTCTGAGGTC
CTGAGTGAAAGTGTGCAAGAATTGTGCCAAGTTGCCGAAGGTGATATCCT
GACTCACATAGACGGGGTGACTGTCTTGGGTGGTAGACATCGGGATCGGA
GACAGGGAAAAGGGTGGGAAGGAAAGGGAGGAGGAGTGGGGGGGGTCACT
GCACGTCTGACCGTAGAGGAGTTATTGCAGAGACAGCAGGTGCCTTACAC
CCGTCAAAGAATGAACAAGTCCTCCCTACACCCGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGCCACCACCACCACCACCAACACCGACAGTACCAG
CATCATCCCTCATACTCCCCCCCCCCTCTTCTGTCATCGAACTTCGTCTC
ATCCGTGCCAGCAGTCTGCCCAAATCTTCCACCTTCTCCCCTTCATTCTC
CACCGCCTCCTCCCCTCCCACCCCGTTTCGTCACCTCCCCGTTTATTATT
ACGAAACGCATCCCAAGGACACCTTAG
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Synonyms
Publications