NO02G04750, NO02G04750 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04750
Unique Name	NO02G04750
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1055
Alignment location	chr2:1284635..1285689 -

Link to JBrowse

Properties


Property Name	Value
Description	Pex19 protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1284635..1285689 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005777	peroxisome
GO:0005777	peroxisome

Vocabulary: **INTERPRO**
Term	Definition
IPR006708	Pex19

Homology

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: EWM30185.1 (Pex19 protein [Nannochloropsis gaditana])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 0

Query:  184 KDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGK-EGGDMALLLDLMTQAQDYGQPPAEIVQALGGGGMDGGI-DPFG 282
            KDLMYPPLKEV RQFP WLE+NKGKVE+ VY+KH  QY LFE+IVAVYE +  G + EG DM +LLDLMTQAQD+GQPPAEIVQALGGG   G   DP G
Sbjct:  165 KDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAG 264

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: SAM08666.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 87.8 bits (216), Expect = 6.500e-14
Identity = 56/196 (28.57%), Postives = 101/196 (51.53%), Query Frame = 0

Query:   82 SSDAAGVGREGDEEETELRNTIAKTIDMLGKIGGGEGGKEAGEG-KEMIDDAFLSKLVEEFDKLGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGGGMDGG 277
            + ++A   R G       ++TIA+T++ L      +  K+      E  +DAF+++L+++ + L  G                                  ++K+++Y P+K++V ++P WL+ NK K +++ Y K+EKQ+ + +RIVA YE  G   K+    A ++D+MTQ Q+YGQPPA +++ +   GMD G
Sbjct:  118 AKNSAQTARGGGGGTASFQDTIAQTMNKL-----KDSSKQVDSSIAEENEDAFMAELMKQMEGLTEG--------------------GDFENVLEGMMSQLMSKEMLYEPMKDLVNKYPAWLKENKDKTDKDQYIKYEKQHDMCQRIVAAYEAPGFDEKDEQQAAKIMDMMTQMQEYGQPPAALLEDM-APGMDFG 287

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: ORX46263.1 (Pex19 protein [Hesseltinella vesiculosa])

HSP 1 Score: 84.7 bits (208), Expect = 5.500e-13
Identity = 35/90 (38.89%), Postives = 62/90 (68.89%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+++Y P+K++V ++P WLEANK   E++ Y+K+++QY + ++IVA YE      K+      ++D+MTQ QD GQPPA +++ +  G
Sbjct:  192 MSKEMLYEPMKDLVGKYPAWLEANKASTEKDQYEKYQQQYEMCQKIVAAYEAPDFNEKDEAQGKKIMDMMTQMQDLGQPPASLLEDMAPG 281

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: CEJ02177.1 (hypothetical protein RMCBS344292_16190 [Rhizopus microsporus])

HSP 1 Score: 82.8 bits (203), Expect = 2.100e-12
Identity = 35/90 (38.89%), Postives = 60/90 (66.67%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+L+Y P+K++ +++P WLE NK K++ + Y+K+++QY + + IVA YE      K       ++DLMT+ QD GQPPAE++  +  G
Sbjct:  170 MSKELLYEPMKDLAQKYPDWLEKNKDKIDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKIMDLMTKMQDLGQPPAELLDEMAPG 259

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: ORE22149.1 (Pex19 protein [Rhizopus microsporus])

HSP 1 Score: 82.8 bits (203), Expect = 2.100e-12
Identity = 35/90 (38.89%), Postives = 60/90 (66.67%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+L+Y P+K++ +++P WLE NK K++ + Y+K+++QY + + IVA YE      K       ++DLMT+ QD GQPPAE++  +  G
Sbjct:  170 MSKELLYEPMKDLAQKYPDWLEKNKDKIDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKIMDLMTKMQDLGQPPAELLDEMAPG 259

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: CEG76862.1 (hypothetical protein RMATCC62417_11697 [Rhizopus microsporus])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+L+Y P+K++ +++P WLE NK K + + Y+K+++QY + + IVA YE      K       ++DLMT+ QD GQPPAE++  +  G
Sbjct:  171 MSKELLYEPMKDLAQKYPDWLEKNKDKTDSKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKIMDLMTKMQDLGQPPAELLDEMAPG 260

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: CEG76863.1 (hypothetical protein RMATCC62417_11697 [Rhizopus microsporus])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+L+Y P+K++ +++P WLE NK K + + Y+K+++QY + + IVA YE      K       ++DLMT+ QD GQPPAE++  +  G
Sbjct:  149 MSKELLYEPMKDLAQKYPDWLEKNKDKTDSKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKIMDLMTKMQDLGQPPAELLDEMAPG 238

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: CEI95362.1 (hypothetical protein RMCBS344292_09551 [Rhizopus microsporus])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+L+Y P+K++ +++P WLE NK K + + Y+K+++QY + + IVA YE      K       ++DLMT+ QD GQPPAE++  +  G
Sbjct:  171 MSKELLYEPMKDLAQKYPDWLEKNKDKTDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKIMDLMTKMQDLGQPPAELLDEMAPG 260

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: XP_023465808.1 (Pex19 protein [Rhizopus microsporus ATCC 52813] >ORE11606.1 Pex19 protein [Rhizopus microsporus var. microsporus] >PHZ12100.1 Pex19 protein [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+L+Y P+K++ +++P WLE NK K + + Y+K+++QY + + IVA YE      K       ++DLMT+ QD GQPPAE++  +  G
Sbjct:  148 MSKELLYEPMKDLAQKYPDWLEKNKDKTDSKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKIMDLMTKMQDLGQPPAELLDEMAPG 237

[Close]

BLAST of NO02G04750 vs. NCBI_GenBank
Match: CEG70340.1 (hypothetical protein RMATCC62417_06257 [Rhizopus microsporus])

HSP 1 Score: 81.3 bits (199), Expect = 6.000e-12
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 0

Query:  182 LAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDLMTQAQDYGQPPAEIVQALGGG 272
            ++K+L+Y P+K++ +++P WLE NK K + + Y+K+++QY + + IVA YE      K       ++DLMT+ QD GQPPAE++  +  G
Sbjct:  171 MSKELLYEPMKDLAQKYPEWLEKNKDKTDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKIMDLMTKMQDLGQPPAELLDEMAPG 260

The following BLAST results are available for this feature:

BLAST of NO02G04750 vs. NCBI_GenBank

BLAST of NO02G04750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM30185.1	3.200e-29	72.00	Pex19 protein [Nannochloropsis gaditana]	[more]
SAM08666.1	6.500e-14	28.57	hypothetical protein [Absidia glauca]	[more]
ORX46263.1	5.500e-13	38.89	Pex19 protein [Hesseltinella vesiculosa]	[more]
CEJ02177.1	2.100e-12	38.89	hypothetical protein RMCBS344292_16190 [Rhizopus m...	[more]
ORE22149.1	2.100e-12	38.89	Pex19 protein [Rhizopus microsporus]	[more]
CEG76862.1	4.600e-12	38.89	hypothetical protein RMATCC62417_11697 [Rhizopus m...	[more]
CEG76863.1	4.600e-12	38.89	hypothetical protein RMATCC62417_11697 [Rhizopus m...	[more]
CEI95362.1	4.600e-12	38.89	hypothetical protein RMCBS344292_09551 [Rhizopus m...	[more]
XP_023465808.1	4.600e-12	38.89	Pex19 protein [Rhizopus microsporus ATCC 52813] >O...	[more]
CEG70340.1	6.000e-12	38.89	hypothetical protein RMATCC62417_06257 [Rhizopus m...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL016	nonsL016	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR032	ncniR032	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR000	ngnoR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK007155	NSK007155	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO02G04750.1	NO02G04750.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668013	gene_1070	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100090g14	gene463	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO02G04750.1	NO02G04750.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO02G04750 ID=NO02G04750|Name=NO02G04750|organism=Nannochloropsis oceanica|type=gene|length=1055bp
AGACAGGCATTTATCAGCCAGACGTCCTAGGCAGGTGACACGATACAAGG
GTTAGACGCCCGCTTGGCGAGGGCAATAGCATCCCTTCAACCCAGCGTCC
ACCAGGCACAGCCATGGCAGCCACGGACGAACTGGATGACATCCTAAACG
ATGCCCTCGACGAGCTAGACGAGGAAGACGAAGAGGAGGCGCAAGCTCGA
AAGCACACTGCCATTAGCTGCAGCGCCTCTACAGAAGCAGCAGGAGCAAT
GTCAACTGCAGGAGCGTCATTCCAGCCCTCCGCCTTCTCCGCGGGAGCCA
AGTCTGCTGGCCCCATCGAAGCTACCGCCGCAGGAACGAGCTCAGGACAA
TCTACGTCGTCGGATGCGGCAGGAGTGGGAAGGGAAGGGGATGAAGAGGA
AACGGAGTTACGGAATACGATTGCCAAGACCATTGACATGCTGGGCAAGA
TTGGAGGCGGGGAAGGGGGTAAGGAAGCAGGAGAAGGTAAGGAAATGATT
GACGATGCATTTTTGAGTAAATTGGTGGAGGAGTTCGACAAATTGGGTGC
TGGATTCGGGGACGGAGGAGGAGGGAAGGAGGGAGGAGGAGAAGCATGTG
ATGGGGGTAATGAGGGAGGGACTGATGCGATGGTCGACACGATGGTGAGG
CAGTTGCTGGCGAAGGATTTGATGTACCCGCCATTGAAGGAGGTTGTACG
ACAATTCCCTGGCTGGTTGGAGGCTAACAAGGGCAAGGTGGAGGAAGAGG
TGTACAAGAAGCATGAAAAGCAATATTTTTTGTTCGAACGGATCGTGGCC
GTGTATGAGAAGGAGGGGGAGGGAGGGAAGGAGGGGGGGGATATGGCATT
ATTGCTAGATTTGATGACACAGGCGCAGGATTATGGCCAGCCGCCGGCGG
AGATTGTGCAGGCATTGGGAGGAGGAGGCATGGATGGAGGGATTGATCCT
TTTGGAGGGATGGGAGGAGGGATGGGAGGGCTGTTGAGTGCGGCGTTGGC
GGGAGGAGGGGGAGGGGGGGAGGGAGGGGAGGGGGAGCAGTGTTGTGTGA
TGTAA

protein sequence of NO02G04750.1

>NO02G04750.1-protein ID=NO02G04750.1-protein|Name=NO02G04750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MAATDELDDILNDALDELDEEDEEEAQARKHTAISCSASTEAAGAMSTAG
ASFQPSAFSAGAKSAGPIEATAAGTSSGQSTSSDAAGVGREGDEEETELR
NTIAKTIDMLGKIGGGEGGKEAGEGKEMIDDAFLSKLVEEFDKLGAGFGD
GGGGKEGGGEACDGGNEGGTDAMVDTMVRQLLAKDLMYPPLKEVVRQFPG
WLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDL
MTQAQDYGQPPAEIVQALGGGGMDGGIDPFGGMGGGMGGLLSAALAGGGG
GGEGGEGEQCCVM*

Synonyms

Publications