NO02G04750.1, NO02G04750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04750.1
Unique NameNO02G04750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1055
Alignment locationchr2:1284635..1285689 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1284635..1285689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04750.1 vs.
Match: EWM30185.1 (Pex19 protein [Nannochloropsis gaditana])

HSP 1 Score: 287.3 bits (734), Expect = 5.600e-74
Identity = 192/319 (60.19%), Postives = 223/319 (69.91%), Query Frame = 0 
Query:    1 MAATDELDDILNDALDELDEEDEEEAQARKHTAISCSASTEAAGAMSTAGASFQPSAFSAGAKSAGPIEATAAGTSSGQSTSSDAA----GVGREGDEEETELRNTIAKTIDMLGKIGGGEGGKEAGEGKE-MIDDAFLSKLVEEFDKLGAGFGDGGGGKEGGGEACDGGNEGGTDAMVDTMVRQLLAKDLMYPPLKEVVRQFPGWLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGK-EGGDMALLLDLMTQAQDYGQPPAEIVQALGGGGMDGGIDPFGGMGGGMGGLLSAALAGGGGGGEGGEGEQCCVM 314
            MA T++LDDILNDALDELD+E+EEE  +  H+      S                   S  +K+A P+EAT AGTS+ +STS+ A+    G+G + DEE+ +L+ TIA+TI+MLGK+GGGEGGKE GEGKE   DDAFLSKLV EFDKLGAGF  G G  EG GE   GG EG TD MVD+MVRQLL KDLMYPPLKEV RQFP WLE+NKGKVE+ VY+KH  QY LFE+IVAVYE +  G + EG DM +LLDLMTQAQD+GQPPAEIVQALGGG   G    F    GGM GLL AALA  G    GG+ E CCVM
Sbjct:    1 MAETEDLDDILNDALDELDQEEEEEIHSAAHSTSQAPNS-------------------SVKSKAAVPVEATGAGTSTPKSTSTVASSASTGIGTDEDEEK-DLKETIARTIEMLGKMGGGEGGKE-GEGKEDTFDDAFLSKLVAEFDKLGAGFESGAG--EGDGEK-GGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGS---FTDPAGGMAGLLHAALASEG----GGDTEGCCVM 288
The following BLAST results are available for this feature:
BLAST of NO02G04750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30185.15.600e-7460.19Pex19 protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04750NO02G04750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04750.1NO02G04750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04750.1.cds1NO02G04750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04750.1 ID=NO02G04750.1|Name=NO02G04750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
AGACAGGCATTTATCAGCCAGACGTCCTAGGCAGGTGACACGATACAAGG
GTTAGACGCCCGCTTGGCGAGGGCAATAGCATCCCTTCAACCCAGCGTCC
ACCAGGCACAGCCATGGCAGCCACGGACGAACTGGATGACATCCTAAACG
ATGCCCTCGACGAGCTAGACGAGGAAGACGAAGAGGAGGCGCAAGCTCGA
AAGCACACTGCCATTAGCTGCAGCGCCTCTACAGAAGCAGCAGGAGCAAT
GTCAACTGCAGGAGCGTCATTCCAGCCCTCCGCCTTCTCCGCGGGAGCCA
AGTCTGCTGGCCCCATCGAAGCTACCGCCGCAGGAACGAGCTCAGGACAA
TCTACGTCGTCGGATGCGGCAGGAGTGGGAAGGGAAGGGGATGAAGAGGA
AACGGAGTTACGGAATACGATTGCCAAGACCATTGACATGCTGGGCAAGA
TTGGAGGCGGGGAAGGGGGTAAGGAAGCAGGAGAAGGTAAGGAAATGATT
GACGATGCATTTTTGAGTAAATTGGTGGAGGAGTTCGACAAATTGGGTGC
TGGATTCGGGGACGGAGGAGGAGGGAAGGAGGGAGGAGGAGAAGCATGTG
ATGGGGGTAATGAGGGAGGGACTGATGCGATGGTCGACACGATGGTGAGG
CAGTTGCTGGCGAAGGATTTGATGTACCCGCCATTGAAGGAGGTTGTACG
ACAATTCCCTGGCTGGTTGGAGGCTAACAAGGGCAAGGTGGAGGAAGAGG
TGTACAAGAAGCATGAAAAGCAATATTTTTTGTTCGAACGGATCGTGGCC
GTGTATGAGAAGGAGGGGGAGGGAGGGAAGGAGGGGGGGGATATGGCATT
ATTGCTAGATTTGATGACACAGGCGCAGGATTATGGCCAGCCGCCGGCGG
AGATTGTGCAGGCATTGGGAGGAGGAGGCATGGATGGAGGGATTGATCCT
TTTGGAGGGATGGGAGGAGGGATGGGAGGGCTGTTGAGTGCGGCGTTGGC
GGGAGGAGGGGGAGGGGGGGAGGGAGGGGAGGGGGAGCAGTGTTGTGTGA
TGTAA
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protein sequence of NO02G04750.1

>NO02G04750.1-protein ID=NO02G04750.1-protein|Name=NO02G04750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MAATDELDDILNDALDELDEEDEEEAQARKHTAISCSASTEAAGAMSTAG
ASFQPSAFSAGAKSAGPIEATAAGTSSGQSTSSDAAGVGREGDEEETELR
NTIAKTIDMLGKIGGGEGGKEAGEGKEMIDDAFLSKLVEEFDKLGAGFGD
GGGGKEGGGEACDGGNEGGTDAMVDTMVRQLLAKDLMYPPLKEVVRQFPG
WLEANKGKVEEEVYKKHEKQYFLFERIVAVYEKEGEGGKEGGDMALLLDL
MTQAQDYGQPPAEIVQALGGGGMDGGIDPFGGMGGGMGGLLSAALAGGGG
GGEGGEGEQCCVM*
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mRNA from alignment at chr2:1284635..1285689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04750.1 ID=NO02G04750.1|Name=NO02G04750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp|location=Sequence derived from alignment at chr2:1284635..1285689- (Nannochloropsis oceanica)
AGACAGGCATTTATCAGCCAGACGTCCTAGGCAGGTGACACGATACAAGG
GTTAGACGCCCGCTTGGCGAGGGCAATAGCATCCCTTCAACCCAGCGTCC
ACCAGGCACAGCCATGGCAGCCACGGACGAACTGGATGACATCCTAAACG
ATGCCCTCGACGAGCTAGACGAGGAAGACGAAGAGGAGGCGCAAGCTCGA
AAGCACACTGCCATTAGCTGCAGCGCCTCTACAGAAGCAGCAGGAGCAAT
GTCAACTGCAGGAGCGTCATTCCAGCCCTCCGCCTTCTCCGCGGGAGCCA
AGTCTGCTGGCCCCATCGAAGCTACCGCCGCAGGAACGAGCTCAGGACAA
TCTACGTCGTCGGATGCGGCAGGAGTGGGAAGGGAAGGGGATGAAGAGGA
AACGGAGTTACGGAATACGATTGCCAAGACCATTGACATGCTGGGCAAGA
TTGGAGGCGGGGAAGGGGGTAAGGAAGCAGGAGAAGGTAAGGAAATGATT
GACGATGCATTTTTGAGTAAATTGGTGGAGGAGTTCGACAAATTGGGTGC
TGGATTCGGGGACGGAGGAGGAGGGAAGGAGGGAGGAGGAGAAGCATGTG
ATGGGGGTAATGAGGGAGGGACTGATGCGATGGTCGACACGATGGTGAGG
CAGTTGCTGGCGAAGGATTTGATGTACCCGCCATTGAAGGAGGTTGTACG
ACAATTCCCTGGCTGGTTGGAGGCTAACAAGGGCAAGGTGGAGGAAGAGG
TGTACAAGAAGCATGAAAAGCAATATTTTTTGTTCGAACGGATCGTGGCC
GTGTATGAGAAGGAGGGGGAGGGAGGGAAGGAGGGGGGGGATATGGCATT
ATTGCTAGATTTGATGACACAGGCGCAGGATTATGGCCAGCCGCCGGCGG
AGATTGTGCAGGCATTGGGAGGAGGAGGCATGGATGGAGGGATTGATCCT
TTTGGAGGGATGGGAGGAGGGATGGGAGGGCTGTTGAGTGCGGCGTTGGC
GGGAGGAGGGGGAGGGGGGGAGGGAGGGGAGGGGGAGCAGTGTTGTGTGA
TGTAA
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Coding sequence (CDS) from alignment at chr2:1284635..1285689-

>NO02G04750.1 ID=NO02G04750.1|Name=NO02G04750.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr2:1284635..1285689- (Nannochloropsis oceanica)
ATGGCAGCCACGGACGAACTGGATGACATCCTAAACGATGCCCTCGACGA
GCTAGACGAGGAAGACGAAGAGGAGGCGCAAGCTCGAAAGCACACTGCCA
TTAGCTGCAGCGCCTCTACAGAAGCAGCAGGAGCAATGTCAACTGCAGGA
GCGTCATTCCAGCCCTCCGCCTTCTCCGCGGGAGCCAAGTCTGCTGGCCC
CATCGAAGCTACCGCCGCAGGAACGAGCTCAGGACAATCTACGTCGTCGG
ATGCGGCAGGAGTGGGAAGGGAAGGGGATGAAGAGGAAACGGAGTTACGG
AATACGATTGCCAAGACCATTGACATGCTGGGCAAGATTGGAGGCGGGGA
AGGGGGTAAGGAAGCAGGAGAAGGTAAGGAAATGATTGACGATGCATTTT
TGAGTAAATTGGTGGAGGAGTTCGACAAATTGGGTGCTGGATTCGGGGAC
GGAGGAGGAGGGAAGGAGGGAGGAGGAGAAGCATGTGATGGGGGTAATGA
GGGAGGGACTGATGCGATGGTCGACACGATGGTGAGGCAGTTGCTGGCGA
AGGATTTGATGTACCCGCCATTGAAGGAGGTTGTACGACAATTCCCTGGC
TGGTTGGAGGCTAACAAGGGCAAGGTGGAGGAAGAGGTGTACAAGAAGCA
TGAAAAGCAATATTTTTTGTTCGAACGGATCGTGGCCGTGTATGAGAAGG
AGGGGGAGGGAGGGAAGGAGGGGGGGGATATGGCATTATTGCTAGATTTG
ATGACACAGGCGCAGGATTATGGCCAGCCGCCGGCGGAGATTGTGCAGGC
ATTGGGAGGAGGAGGCATGGATGGAGGGATTGATCCTTTTGGAGGGATGG
GAGGAGGGATGGGAGGGCTGTTGAGTGCGGCGTTGGCGGGAGGAGGGGGA
GGGGGGGAGGGAGGGGAGGGGGAGCAGTGTTGTGTGATGTAA
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Synonyms
Publications