NO02G04570, NO02G04570 (gene) Nannochloropsis oceanica

Overview
NameNO02G04570
Unique NameNO02G04570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length720
Alignment locationchr2:1236995..1237714 -

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Properties
Property NameValue
DescriptionA20/AN1-like zinc finger family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1236995..1237714 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035896AN1-like_Znf
IPR002653Znf_A20
IPR000058Znf_AN1
Homology
BLAST of NO02G04570 vs. NCBI_GenBank
Match: EWM30353.1 (an1-type zinc finger protein 5 [Nannochloropsis gaditana] >EWM30354.1 an1-type zinc finger protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 227.3 bits (578), Expect = 5.200e-56
Identity = 133/239 (55.65%), Postives = 145/239 (60.67%), Query Frame = 0
Query:    1 MSDNDNTQACADDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESXXXXXXXXXXXXXXXXXXQALALGEEGSASPLGAAASAASLGSVDLPQGPDATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVAGGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKMTDQL 240
            MSDN NTQAC DDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIES                   + AL E    S   A  S+ S         P   P   Q      ME  +S+ S    L    +L T  +AAP      V     AA     +  V A  + +K KNRC VC+KKVGLTGIECRCE VFCGVHRYPSQH+CAFDHKEHDR NLK+TLTGGGQFAKMTDQL
Sbjct:    1 MSDNGNTQACVDDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASS----LDVPAALETAKVAAP------VVQATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHKEHDRQNLKSTLTGGGQFAKMTDQL 229          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: CBN78322.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 97.1 bits (240), Expect = 8.100e-17
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0
Query:  172 KKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKM 236
            +KN+ RCF C KKVG TGI CRC+ VFC +HRYP QH C FD K  DR +LK T+ GGGQF+K+
Sbjct:  204 QKNRKRCFTCHKKVGYTGIACRCDYVFCSLHRYPDQHDCTFDFKTSDRNDLKRTVVGGGQFSKV 267          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: GAY02490.1 (zinc-finger containing protein [Pythium insidiosum])

HSP 1 Score: 90.1 bits (222), Expect = 1.000e-14
Identity = 47/87 (54.02%), Postives = 52/87 (59.77%), Query Frame = 0
Query:  157 AATDAATHVTARVVA--------KKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKM 236
            A  +AA   T  VVA        +KNK RC+ C KKVGLT IECRC  VFC  HRYP QH C+FD K  DRA L     GGGQF K+
Sbjct:   45 AEVEAAAVETPAVVAASGDEPPVQKNKKRCWECKKKVGLTAIECRCGYVFCSGHRYPDQHNCSFDFKAADRAELARRNPGGGQFGKL 131          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: XP_014384632.1 (PREDICTED: AN1-type zinc finger protein 6 isoform X1 [Myotis brandtii] >XP_014384636.1 PREDICTED: AN1-type zinc finger protein 6 isoform X1 [Myotis brandtii])

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-14
Identity = 67/200 (33.50%), Postives = 93/200 (46.50%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESXXXXXXXXXXXXXXXXXXQALALGEEGSASPLGAAASAASLGSV-DLPQGPDATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVAGGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHK 216
            C  GCGFYG+ +T  MCS C+K+      +S +                   Q   +     +S   +     + GSV + P   D+T S  Q   V      S S++SS G S     T+ D AAP T +   +    A   T+       +   K+ KNRCF+C KKVGLTG ECRC  V+CGVHRY   H C++++K
Sbjct:   14 CSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNDRISPPDKVVGCPVCRITNTQCGTIAATSVSSLSDSLPVQCTDGSVPEAPSTLDSTSSSMQPSPVSNQPLLSESVTSSQGDS-----TSADKAAPETEDLQASVSDTAQQPTEEQNKSLEK--PKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYK 206          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: XP_014305768.1 (AN1-type zinc finger protein 6 isoform X1 [Myotis lucifugus])

HSP 1 Score: 89.0 bits (219), Expect = 2.200e-14
Identity = 67/200 (33.50%), Postives = 92/200 (46.00%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESXXXXXXXXXXXXXXXXXXQALALGEEGSASPLGAAASAASLGSV-DLPQGPDATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVAGGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHK 216
            C  GCGFYG+ +T  MCS C+K+      +S +                   Q   +     +S   +     + GSV + P   D+T S  Q   V      S S++SS G S     T  D AAP T +   +    A   T+       +   K+ KNRCF+C KKVGLTG ECRC  V+CGVHRY   H C++++K
Sbjct:   14 CSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNDRISPPDKVVGCPVCRITNTQCGTIAATSVSSLSDSLPVQCTDGSVPEAPSTLDSTSSSMQPSPVSNQPLLSESVTSSQGDS-----TPADKAAPETEDLQASVSDTAQQPTEEQNKSLEK--PKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYK 206          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: CCA27656.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-14
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0
Query:  170 VAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAK 235
            + +KNKNRC+ C KKVGL  IECRC  VFC  HRY  QH C+FD+K  DRA L     GGGQF K
Sbjct:   93 LVQKNKNRCWECKKKVGLAAIECRCGYVFCNSHRYADQHECSFDYKAADRAELARRNPGGGQFVK 157          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: CCI10992.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 87.4 bits (215), Expect = 6.400e-14
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 0
Query:  170 VAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAK 235
            + +KNKNRC+ C KKVGL  +ECRC  VFC  HRY  QH C+FD+K  DRA L     GGGQF K
Sbjct:   93 LVQKNKNRCWECKKKVGLAAMECRCGYVFCNSHRYADQHQCSFDYKAADRAELARRNPGGGQFVK 157          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: XP_021461154.1 (AN1-type zinc finger protein 5-like isoform X2 [Oncorhynchus mykiss] >CDQ73104.1 unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 87.4 bits (215), Expect = 6.400e-14
Identity = 70/221 (31.67%), Postives = 97/221 (43.89%), Query Frame = 0
Query:   11 ADDTRP------CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESXXXXXXXXXXXXXXXXXXQALALGEEGSASPLGAAAS--AASLGSVDLPQGPDATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVAGGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLK 224
            A +T+P      C  GCGFYG+ +   MCS C+K+     ++S  S                  Q   +G  GS +P  +A     ASL  VD P    A       +  + +    + MS S    A P +T    ++PAT       G EA   T               KNRCF+C K+VGLTG +CRC  +FCGVHRY  +H C +D+K    A ++
Sbjct:    2 AQETKPSLTPVLCTTGCGFYGNPRNNGMCSVCYKEHLNRQQSSTHS----------------LSQLSPMGTVGSPTPDASAIQRLEASLAKVD-PSSGSAADMARTIQGSLPVTQQMTEMSISREDKAEPVVTEPTASSPAT-------GDEAKGNT-----------PNPKKNRCFMCRKRVGLTGFDCRCGNLFCGVHRYSDKHNCPYDYKAEAAAKIR 187          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: XP_021461153.1 (AN1-type zinc finger protein 5-like isoform X1 [Oncorhynchus mykiss])

HSP 1 Score: 87.4 bits (215), Expect = 6.400e-14
Identity = 70/221 (31.67%), Postives = 97/221 (43.89%), Query Frame = 0
Query:   11 ADDTRP------CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESXXXXXXXXXXXXXXXXXXQALALGEEGSASPLGAAAS--AASLGSVDLPQGPDATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVAGGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLK 224
            A +T+P      C  GCGFYG+ +   MCS C+K+     ++S  S                  Q   +G  GS +P  +A     ASL  VD P    A       +  + +    + MS S    A P +T    ++PAT       G EA   T               KNRCF+C K+VGLTG +CRC  +FCGVHRY  +H C +D+K    A ++
Sbjct:   25 AQETKPSLTPVLCTTGCGFYGNPRNNGMCSVCYKEHLNRQQSSTHS----------------LSQLSPMGTVGSPTPDASAIQRLEASLAKVD-PSSGSAADMARTIQGSLPVTQQMTEMSISREDKAEPVVTEPTASSPAT-------GDEAKGNT-----------PNPKKNRCFMCRKRVGLTGFDCRCGNLFCGVHRYSDKHNCPYDYKAEAAAKIR 210          
BLAST of NO02G04570 vs. NCBI_GenBank
Match: CCD28129.1 (zinc-finger containing protein, partial [Plasmopara viticola])

HSP 1 Score: 87.0 bits (214), Expect = 8.400e-14
Identity = 66/219 (30.14%), Postives = 89/219 (40.64%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESXXXXXXXXXXXXXXXXXXQALALGEEGSASPLGAAASAASLGSVDLPQGPDATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVAGGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKM 236
            C+ GCGF+G+  +G MCS C+K T    +A++                                                     A+P  +  K  V                AA   TT    APA+ +  +     A    +AA  + A  + +KNK RC+ C KKVGLT IECRC  VFC  HR+  QH+C FD K  DRA L     GGG+F+K+
Sbjct:    9 CLNGCGFFGAPGSGGMCSVCWKKTMSDRQAAV-----------------------------------------------------ASPRTANVKVDV----------------AAVLETT----APASAD--LVDNNSATLKEEAAETLVAEKLVQKNKKRCWECKKKVGLTAIECRCGYVFCSSHRFEDQHSCTFDFKTADRAELARRNPGGGKFSKL 152          
The following BLAST results are available for this feature:
BLAST of NO02G04570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30353.15.200e-5655.65an1-type zinc finger protein 5 [Nannochloropsis ga... [more]
CBN78322.18.100e-1762.50conserved unknown protein [Ectocarpus siliculosus][more]
GAY02490.11.000e-1454.02zinc-finger containing protein [Pythium insidiosum... [more]
XP_014384632.11.300e-1433.50PREDICTED: AN1-type zinc finger protein 6 isoform ... [more]
XP_014305768.12.200e-1433.50AN1-type zinc finger protein 6 isoform X1 [Myotis ... [more]
CCA27656.12.900e-1460.00conserved hypothetical protein [Albugo laibachii N... [more]
CCI10992.16.400e-1458.46unnamed protein product [Albugo candida][more]
XP_021461154.16.400e-1431.67AN1-type zinc finger protein 5-like isoform X2 [On... [more]
XP_021461153.16.400e-1431.67AN1-type zinc finger protein 5-like isoform X1 [On... [more]
CCD28129.18.400e-1430.14zinc-finger containing protein, partial [Plasmopar... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007132NSK007132Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04570.1NO02G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575139gene_1051Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g14gene446Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04570.1NO02G04570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04570 ID=NO02G04570|Name=NO02G04570|organism=Nannochloropsis oceanica|type=gene|length=720bp
ATGTCCGACAACGACAACACCCAAGCTTGCGCTGACGACACCCGTCCCTG
TGTGAAGGGCTGCGGGTTCTATGGTTCCGCGCAGACAGGCTACATGTGTT
CCAAATGCTTCAAAGACACTGCGGGTGTCACCCGGGCGTCCATCGAGAGC
TCAACTCCATCCAGCAGCAGCAGTGGCAGTGCCGCGGCGGCCGCGATTCT
GACCCAAGCCTTGGCCCTTGGAGAGGAGGGATCGGCCTCGCCCTTGGGTG
CAGCCGCCTCTGCTGCATCTCTTGGATCCGTGGATTTGCCGCAAGGCCCG
GACGCAACGCCTTCGCAGTCGCAGACAAAGGCCGTGGTAGGCATGGAGGC
TGGCAGCAGCAGCATGTCGTCGTCGATGGGTTTGTCTGCTGCGCCTTCCC
TGACGACCAAGGACCTCGCTGCTCCTGCCACCATGGAGGGCATGGTTGCC
GGAGGAGGGGAAGCAGCCGCAGCAACCGATGCAGCAACACACGTTACTGC
GCGTGTAGTCGCAAAAAAAAACAAGAACCGTTGCTTTGTATGTAGCAAAA
AGGTGGGGTTGACGGGGATCGAGTGCCGCTGTGAGGGCGTGTTTTGTGGC
GTGCACCGATACCCCAGTCAGCATGCATGTGCCTTTGACCACAAGGAGCA
TGATCGGGCGAACCTCAAGACGACCTTAACGGGGGGAGGGCAGTTCGCAA
AGATGACGGATCAGCTTTAG
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protein sequence of NO02G04570.1

>NO02G04570.1-protein ID=NO02G04570.1-protein|Name=NO02G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MSDNDNTQACADDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIES
STPSSSSSGSAAAAAILTQALALGEEGSASPLGAAASAASLGSVDLPQGP
DATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVA
GGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCG
VHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKMTDQL*
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Synonyms
Publications