NO02G04570.1, NO02G04570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04570.1
Unique NameNO02G04570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length720
Alignment locationchr2:1236995..1237714 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1236995..1237714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04570.1 vs.
Match: EWM30353.1 (an1-type zinc finger protein 5 [Nannochloropsis gaditana]; EWM30354.1 an1-type zinc finger protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 225.3 bits (573), Expect = 2.000e-55
Identity = 137/239 (57.32%), Postives = 151/239 (63.18%), Query Frame = 0 
Query:    1 MSDNDNTQACADDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESSTPSSSSSGSAAAAAILTQALALGEEGSASPLGAAASAASLGSVDLPQGPDATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVAGGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCGVHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKMTDQL 240
            MSDN NTQAC DDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIES    S +S +A      T + AL E    S   A  S+ S         P   P   Q      ME  +S+ S    L    +L T  +AAP      V     AA     +  V A  + +K KNRC VC+KKVGLTGIECRCE VFCGVHRYPSQH+CAFDHKEHDR NLK+TLTGGGQFAKMTDQL
Sbjct:    1 MSDNGNTQACVDDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASS----LDVPAALETAKVAAP------VVQATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHKEHDRQNLKSTLTGGGQFAKMTDQL 229
The following BLAST results are available for this feature:
BLAST of NO02G04570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30353.12.000e-5557.32an1-type zinc finger protein 5 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04570NO02G04570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04570.1NO02G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04570.1.cds1NO02G04570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04570.1 ID=NO02G04570.1|Name=NO02G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGTCCGACAACGACAACACCCAAGCTTGCGCTGACGACACCCGTCCCTG
TGTGAAGGGCTGCGGGTTCTATGGTTCCGCGCAGACAGGCTACATGTGTT
CCAAATGCTTCAAAGACACTGCGGGTGTCACCCGGGCGTCCATCGAGAGC
TCAACTCCATCCAGCAGCAGCAGTGGCAGTGCCGCGGCGGCCGCGATTCT
GACCCAAGCCTTGGCCCTTGGAGAGGAGGGATCGGCCTCGCCCTTGGGTG
CAGCCGCCTCTGCTGCATCTCTTGGATCCGTGGATTTGCCGCAAGGCCCG
GACGCAACGCCTTCGCAGTCGCAGACAAAGGCCGTGGTAGGCATGGAGGC
TGGCAGCAGCAGCATGTCGTCGTCGATGGGTTTGTCTGCTGCGCCTTCCC
TGACGACCAAGGACCTCGCTGCTCCTGCCACCATGGAGGGCATGGTTGCC
GGAGGAGGGGAAGCAGCCGCAGCAACCGATGCAGCAACACACGTTACTGC
GCGTGTAGTCGCAAAAAAAAACAAGAACCGTTGCTTTGTATGTAGCAAAA
AGGTGGGGTTGACGGGGATCGAGTGCCGCTGTGAGGGCGTGTTTTGTGGC
GTGCACCGATACCCCAGTCAGCATGCATGTGCCTTTGACCACAAGGAGCA
TGATCGGGCGAACCTCAAGACGACCTTAACGGGGGGAGGGCAGTTCGCAA
AGATGACGGATCAGCTTTAG
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protein sequence of NO02G04570.1

>NO02G04570.1-protein ID=NO02G04570.1-protein|Name=NO02G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MSDNDNTQACADDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIES
STPSSSSSGSAAAAAILTQALALGEEGSASPLGAAASAASLGSVDLPQGP
DATPSQSQTKAVVGMEAGSSSMSSSMGLSAAPSLTTKDLAAPATMEGMVA
GGGEAAAATDAATHVTARVVAKKNKNRCFVCSKKVGLTGIECRCEGVFCG
VHRYPSQHACAFDHKEHDRANLKTTLTGGGQFAKMTDQL*
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mRNA from alignment at chr2:1236995..1237714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04570.1 ID=NO02G04570.1|Name=NO02G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at chr2:1236995..1237714- (Nannochloropsis oceanica)
ATGTCCGACAACGACAACACCCAAGCTTGCGCTGACGACACCCGTCCCTG
TGTGAAGGGCTGCGGGTTCTATGGTTCCGCGCAGACAGGCTACATGTGTT
CCAAATGCTTCAAAGACACTGCGGGTGTCACCCGGGCGTCCATCGAGAGC
TCAACTCCATCCAGCAGCAGCAGTGGCAGTGCCGCGGCGGCCGCGATTCT
GACCCAAGCCTTGGCCCTTGGAGAGGAGGGATCGGCCTCGCCCTTGGGTG
CAGCCGCCTCTGCTGCATCTCTTGGATCCGTGGATTTGCCGCAAGGCCCG
GACGCAACGCCTTCGCAGTCGCAGACAAAGGCCGTGGTAGGCATGGAGGC
TGGCAGCAGCAGCATGTCGTCGTCGATGGGTTTGTCTGCTGCGCCTTCCC
TGACGACCAAGGACCTCGCTGCTCCTGCCACCATGGAGGGCATGGTTGCC
GGAGGAGGGGAAGCAGCCGCAGCAACCGATGCAGCAACACACGTTACTGC
GCGTGTAGTCGCAAAAAAAAACAAGAACCGTTGCTTTGTATGTAGCAAAA
AGGTGGGGTTGACGGGGATCGAGTGCCGCTGTGAGGGCGTGTTTTGTGGC
GTGCACCGATACCCCAGTCAGCATGCATGTGCCTTTGACCACAAGGAGCA
TGATCGGGCGAACCTCAAGACGACCTTAACGGGGGGAGGGCAGTTCGCAA
AGATGACGGATCAGCTTTAG
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Coding sequence (CDS) from alignment at chr2:1236995..1237714-

>NO02G04570.1 ID=NO02G04570.1|Name=NO02G04570.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr2:1236995..1237714- (Nannochloropsis oceanica)
ATGTCCGACAACGACAACACCCAAGCTTGCGCTGACGACACCCGTCCCTG
TGTGAAGGGCTGCGGGTTCTATGGTTCCGCGCAGACAGGCTACATGTGTT
CCAAATGCTTCAAAGACACTGCGGGTGTCACCCGGGCGTCCATCGAGAGC
TCAACTCCATCCAGCAGCAGCAGTGGCAGTGCCGCGGCGGCCGCGATTCT
GACCCAAGCCTTGGCCCTTGGAGAGGAGGGATCGGCCTCGCCCTTGGGTG
CAGCCGCCTCTGCTGCATCTCTTGGATCCGTGGATTTGCCGCAAGGCCCG
GACGCAACGCCTTCGCAGTCGCAGACAAAGGCCGTGGTAGGCATGGAGGC
TGGCAGCAGCAGCATGTCGTCGTCGATGGGTTTGTCTGCTGCGCCTTCCC
TGACGACCAAGGACCTCGCTGCTCCTGCCACCATGGAGGGCATGGTTGCC
GGAGGAGGGGAAGCAGCCGCAGCAACCGATGCAGCAACACACGTTACTGC
GCGTGTAGTCGCAAAAAAAAACAAGAACCGTTGCTTTGTATGTAGCAAAA
AGGTGGGGTTGACGGGGATCGAGTGCCGCTGTGAGGGCGTGTTTTGTGGC
GTGCACCGATACCCCAGTCAGCATGCATGTGCCTTTGACCACAAGGAGCA
TGATCGGGCGAACCTCAAGACGACCTTAACGGGGGGAGGGCAGTTCGCAA
AGATGACGGATCAGCTTTAG
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Synonyms
Publications