NO02G04520, NO02G04520 (gene) Nannochloropsis oceanica

Overview
NameNO02G04520
Unique NameNO02G04520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2370
Alignment locationchr2:1223798..1226167 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1223798..1226167 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G04520 vs. NCBI_GenBank
Match: EWM30287.1 (hypothetical protein Naga_100003g21 [Nannochloropsis gaditana])

HSP 1 Score: 347.4 bits (890), Expect = 9.400e-92
Identity = 244/411 (59.37%), Postives = 268/411 (65.21%), Query Frame = 0 
Query:  236 SFAECLYRTMLKMDQGKKGEIQEAFRYFKSHPKLPHVEVQDKLIQLLGKDFVSRAWKEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHVVVEMLDDLDLVNAQQATGNDIETDITREADLESIVREEDEGLLEHLQPMRMLSAVEAEKWENKHVMDGELCRKALARAERKEGDRLAA-------------LAMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRKWAVEALSRACQDYATGLLEDLVRIARGRGNDDVRHLIREGATLGAGEPMVVKFLQPYKMPWAGGALAXXXXXXXXXXXXXXXXXXXXQTRGLRAEKPHVLTRADVVRYLARKQRKGRGRGGQGHDRLIDLLATTSVKRVDLVLG 634
            SFAECLYRTMLKMD  KK  IQEAFRYFK+HPKLPHVEVQ KL++LLGKDFVSRAW+EAR                                                                   VVE LDDLDL+NAQQATG DIE+DITREADLE IVREEDEGLLEH+QP+RMLSA EAE WE KHVMDGEL RKAL RAER+E +RL+A             L MG            XXXXXXXXXXXXXXXXXX      AVEALSRACQDYATGLLEDLVR+A+ R N+DVRHL+REGATLGA EPMVV+FL PY++P    A   XXXXXXXXXXXXXXX     T  LR E+ H+L R DVVRYL RKQR+GR    QGHDRLID+LATT+VKR +L  G
Sbjct:  420 SFAECLYRTMLKMDTEKKVSIQEAFRYFKAHPKLPHVEVQQKLVELLGKDFVSRAWREARRLLEQAGGQRGDGERFSPDKPPSSRQQHQLPHQEQGAARAPLQQPQGGQ------------------VVEALDDLDLINAQQATGEDIESDITREADLECIVREEDEGLLEHIQPLRMLSAKEAETWEFKHVMDGELVRKALRRAERREEERLSARTVRCANGGEKGKLGMGAEDQGRKKLVGEXXXXXXXXXXXXXXXXXXXXXXARAVEALSRACQDYATGLLEDLVRLAKQRENEDVRHLVREGATLGAQEPMVVRFLAPYELPGRKNA-DEXXXXXXXXXXXXXXXRNGEATESLRPEEGHILRRTDVVRYLGRKQRRGR---RQGHDRLIDMLATTNVKRGELSRG 808
The following BLAST results are available for this feature:
BLAST of NO02G04520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30287.19.400e-9259.37hypothetical protein Naga_100003g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007122NSK007122Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04520.1NO02G04520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627435gene_1045Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g21gene442Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04520.1NO02G04520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04520 ID=NO02G04520|Name=NO02G04520|organism=Nannochloropsis oceanica|type=gene|length=2370bp
GGCTTTGCTTTGGCTGCCTGGGGCGACTATTATTTAATTTTTGTAGCTCG
GTCGATTATTCGGACTCCAAAGGTCGTCACGGTTGCTGTCCTTCATTGCA
TCATCACACTTCATCAGTACCCTATTAACACGGACGCAACGCAACACAAC
TAGTCCTATGTACAGTCTTTCACAGTCAAGAAGTTGTGCCGATCATGCTA
GCCTTCCTTGCGAGCCTTTTCGTTGAATTTTCGTCACGATCAGCCTCCTC
CATTTTCTCACCACCATCATATTGTATGCAGCCCCACGCACGCATAGGGC
CATGGAAGTCGATGTTGCCGCCTTGCTCCAAGAAGAGGACGATGAGGAGA
GCTCCGACGTGCCAATCCCTCGAGCAGTCCCACCTCCTGGCGCCTACCCA
CCCCAGCTTCTGGGCCCACCGCCTCGATCTGGGGGAGGAGGACCTTATGT
TCGTCCTTCGACAGCCCCCTACAACAATCCCTCGGGTGACGTCCCCATGC
CCTTCTCAGGTGCCTTTGTCCCTCCAGGTCAAATGCAACAGACGCAATTA
GGCACCTTTGCCCAAGCACACGTCCATCCCCAGCAGCCGCGGCAGCAGCA
GCAGTATGCCCAGCACCCTCAACCGACAGGTTCCATGCCATCCGTGCAGC
AGCAGCAGCAGCAACAGCATTATCAATATCCACAGCAGCCGACGGTCAAG
TCTCAGCAGCCCCATTTGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGCA
ACAGCAACAGCGACAGCAACAACAAATGCAGCAGCAGCTCCAGCAGCGGC
AGCAACAGCTCCAGCATCAACAGCGCCTACAACGACCAGAACAGCAGCAG
CAGCAGCATCAACAGCAACAGCGATCCCAACCGCCACTCCAACGCACTGC
CCCTCCCACCGCCCGTCCTCCTTCTCTCTCCACCACCATTTCCAACTCCT
CCTCACTCGCCTCCACATCCTCCGGCCCCTCCTCCACCAGCAGTGCCAAG
AAAGCAAGCTTCGCAGAATGCCTTTACAGAACCATGCTCAAAATGGACCA
GGGAAAAAAGGGTGAGATTCAAGAGGCGTTTCGTTATTTCAAATCTCACC
CGAAATTACCCCATGTGGAGGTGCAGGACAAGTTGATCCAGTTGCTCGGG
AAAGACTTTGTCTCCCGGGCCTGGAAGGAGGCGCGGCGGTTGCTCGAGGA
AGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAG
GAGGAGGAAGAGGAGGAGGAGGCGCGCTCTCCTCGCCAGAACAGGGGAGA
AGGGAGCAGGGAGGGATATCGCGGCAGCAGCACCAGCAGCACCAGCAGCA
GATGGCTGCACGACATCAGCAATATCCGCAACATGTGGTGGTGGAGATGC
TGGACGACCTGGATTTGGTGAACGCACAGCAGGCGACGGGGAACGACATC
GAGACGGACATCACACGGGAGGCAGATCTGGAGTCGATCGTCCGAGAAGA
AGACGAGGGGCTGCTGGAGCACCTACAACCGATGCGGATGCTCTCGGCGG
TGGAAGCGGAGAAATGGGAAAATAAGCATGTGATGGATGGGGAGCTCTGT
CGAAAGGCTTTGGCGAGGGCAGAGAGGAAAGAGGGGGACAGGTTGGCCGC
GCTAGCGATGGGAGGGATGGGCGCAGGTAAGAAGAGCGTGGGGAAGGAGG
AGGGGGGAGAGAACGAGGTGGAGGACGAGGTGGAGGAGGACGAGGAGGCG
GAGGGTCCAGGGAGGAAGTGGGCAGTGGAAGCGTTGTCGAGGGCTTGCCA
GGACTATGCGACTGGCTTGTTGGAGGACTTGGTGAGAATTGCGCGGGGGA
GAGGGAACGACGACGTGAGGCATTTGATTCGAGAGGGGGCGACATTGGGG
GCAGGAGAGCCCATGGTGGTTAAATTTTTACAGCCTTACAAGATGCCGTG
GGCGGGGGGGGCATTAGCGGAGGATGAACAACAGCAGCAGCAACAGATGC
AGCAGCAGCAGCAGTTGCAGCAGCAGGGCCAGACGAGGGGGTTGAGAGCG
GAGAAACCCCACGTTTTGACAAGGGCGGATGTGGTGCGGTACTTGGCGAG
AAAGCAGAGAAAAGGGAGGGGGAGAGGGGGGCAGGGGCACGATCGGTTGA
TAGATTTGCTGGCGACAACGAGTGTGAAGAGGGTGGATTTGGTGCTGGGG
AGAGGAGAAAGAGGAGGGGGAGGAGGAAGGGGAGGAAGAGGAGGGGATGG
GAGAGGCTAAGCGACTGTATTTCTAAAGAGAAGGAGGTGAAGGAAAAGAA
GAATATCGAGCGCGTGAGCCTGTCTTTTCTGTCTGCTAAACCAACTGCGG
GCGCTCGGCCTCTTTTCGGC
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protein sequence of NO02G04520.1

>NO02G04520.1-protein ID=NO02G04520.1-protein|Name=NO02G04520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=653bp
MEVDVAALLQEEDDEESSDVPIPRAVPPPGAYPPQLLGPPPRSGGGGPYV
RPSTAPYNNPSGDVPMPFSGAFVPPGQMQQTQLGTFAQAHVHPQQPRQQQ
QYAQHPQPTGSMPSVQQQQQQQHYQYPQQPTVKSQQPHLQQQQQQQQLQQ
QQQRQQQQMQQQLQQRQQQLQHQQRLQRPEQQQQQHQQQQRSQPPLQRTA
PPTARPPSLSTTISNSSSLASTSSGPSSTSSAKKASFAECLYRTMLKMDQ
GKKGEIQEAFRYFKSHPKLPHVEVQDKLIQLLGKDFVSRAWKEARRLLEE
GGGGGGGGGGGEGGRGGGGRGGGGALSSPEQGRREQGGISRQQHQQHQQQ
MAARHQQYPQHVVVEMLDDLDLVNAQQATGNDIETDITREADLESIVREE
DEGLLEHLQPMRMLSAVEAEKWENKHVMDGELCRKALARAERKEGDRLAA
LAMGGMGAGKKSVGKEEGGENEVEDEVEEDEEAEGPGRKWAVEALSRACQ
DYATGLLEDLVRIARGRGNDDVRHLIREGATLGAGEPMVVKFLQPYKMPW
AGGALAEDEQQQQQQMQQQQQLQQQGQTRGLRAEKPHVLTRADVVRYLAR
KQRKGRGRGGQGHDRLIDLLATTSVKRVDLVLGRGERGGGGGRGGRGGDG
RG*
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Synonyms
Publications