|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:1223798..1226167 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04520.1 vs.
Match: EWM30287.1 (hypothetical protein Naga_100003g21 [Nannochloropsis gaditana]) HSP 1 Score: 368.6 bits (945), Expect = 3.900e-98 Identity = 313/602 (51.99%), Postives = 371/602 (61.63%), Query Frame = 0
Query: 75 PGQMQQTQLGTFAQAHVHPQQPRQQQQYAQH--------PQPTGSMPSVQQQQQQQHYQYPQQPTVKSQQPHLQQQQQQQQLQQQQQR--------QQQQMQQQLQQRQQQLQHQQRLQRPEQQQQQHQQQQRSQPPLQRTAPPTARPPSLSTTISNSSSLASTSSGPSSTSSAKKASFAECLYRTMLKMDQGKKGEIQEAFRYFKSHPKLPHVEVQDKLIQLLGKDFVSRAWKEARRLLEEGGGGGGGGGGGEGGRGGGGRGGGGALSSPEQGRREQGGISRQQHQ-QHQQQMAARH--QQYPQHVVVEMLDDLDLVNAQQATGNDIETDITREADLESIVREEDEGLLEHLQPMRMLSAVEAEKWENKHVMDGELCRKALARAERKEGDRLAA-------------LAMGGMGAGKKSVGKEEGGENEVEDEVEEDEEAEGPGRKWAVEALSRACQDYATGLLEDLVRIARGRGNDDVRHLIREGATLGAGEPMVVKFLQPYKMPWAGGALAEDEQQQQQQMQQQQQLQQQGQTRGLRAEKPHVLTRADVVRYLARKQRKGRGRGGQGHDRLIDLLATTSVKRVDLVLGRGERGGGGGRG 645
P QQ + Q PQQ +QQQQ Q QP S QQ Q QQH Q Q+P QQ LQQQ Q Q Q Q+ QQ +++ + Q HQQ+ +QQ HQ QR P Q P TA + + ++S++ A T SG +KASFAECLYRTMLKMD KK IQEAFRYFK+HPKLPHVEVQ KL++LLGKDFVSRAW+EARRLLE+ GG G G E+ ++ SRQQHQ HQ+Q AAR QQ VVE LDDLDL+NAQQATG DIE+DITREADLE IVREEDEGLLEH+QP+RMLSA EAE WE KHVMDGEL RKAL RAER+E +RL+A L MG G+K + E G+ E ++ EE EE E GR AVEALSRACQDYATGLLEDLVR+A+ R N+DVRHL+REGATLGA EPMVV+FL PY++P A E+E +++Q+ Q + Q + T LR E+ H+L R DVVRYL RKQR+GR QGHDRLID+LATT+VKR + L RG G RG
Sbjct: 253 PSPQQQPRKQQQQQQQQQPQQQQQQQQQQQQLLQQRQLSQQPQHSQQPTQQSQPQQHLQ--QRPLHHQQQHQLQQQHQPATPQVQLQQPPGAPAVGSQQSLRRPAPSQIVQSSHQQQSYPQQQQSPSHQHLQR---PSQYQDPATANTTNTHQSGNSSANTAGTGSG-----GPRKASFAECLYRTMLKMDTEKKVSIQEAFRYFKAHPKLPHVEVQQKLVELLGKDFVSRAWREARRLLEQAGGQRGDG---------------------ERFSPDKPPSSRQQHQLPHQEQGAARAPLQQPQGGQVVEALDDLDLINAQQATGEDIESDITREADLECIVREEDEGLLEHIQPLRMLSAKEAETWEFKHVMDGELVRKALRRAERREEERLSARTVRCANGGEKGKLGMGAEDQGRKKLVGEGKGKVEEKERQEEPEEDESLGRARAVEALSRACQDYATGLLEDLVRLAKQRENEDVRHLVREGATLGAQEPMVVRFLAPYELPGRKNA-DENEAEEEQEQQGKGQHRNGEATESLRPEEGHILRRTDVVRYLGRKQRRGR---RQGHDRLIDMLATTNVKRGE--LSRGASGQAHLRG 817
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G04520.1 ID=NO02G04520.1|Name=NO02G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp
GGCTTTGCTTTGGCTGCCTGGGGCGACTATTATTTAATTTTTGTAGCTCG
GTCGATTATTCGGACTCCAAAGGTCGTCACGGTTGCTGTCCTTCATTGCA
TCATCACACTTCATCAGTACCCTATTAACACGGACGCAACGCAACACAAC
TAGTCCTATGTACAGTCTTTCACAGTCAAGAAGTTGTGCCGATCATGCTA
GCCTTCCTTGCGAGCCTTTTCGTTGAATTTTCGTCACGATCAGCCTCCTC
CATTTTCTCACCACCATCATATTGTATGCAGCCCCACGCACGCATAGGGC
CATGGAAGTCGATGTTGCCGCCTTGCTCCAAGAAGAGGACGATGAGGAGA
GCTCCGACGTGCCAATCCCTCGAGCAGTCCCACCTCCTGGCGCCTACCCA
CCCCAGCTTCTGGGCCCACCGCCTCGATCTGGGGGAGGAGGACCTTATGT
TCGTCCTTCGACAGCCCCCTACAACAATCCCTCGGGTGACGTCCCCATGC
CCTTCTCAGGTGCCTTTGTCCCTCCAGGTCAAATGCAACAGACGCAATTA
GGCACCTTTGCCCAAGCACACGTCCATCCCCAGCAGCCGCGGCAGCAGCA
GCAGTATGCCCAGCACCCTCAACCGACAGGTTCCATGCCATCCGTGCAGC
AGCAGCAGCAGCAACAGCATTATCAATATCCACAGCAGCCGACGGTCAAG
TCTCAGCAGCCCCATTTGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGCA
ACAGCAACAGCGACAGCAACAACAAATGCAGCAGCAGCTCCAGCAGCGGC
AGCAACAGCTCCAGCATCAACAGCGCCTACAACGACCAGAACAGCAGCAG
CAGCAGCATCAACAGCAACAGCGATCCCAACCGCCACTCCAACGCACTGC
CCCTCCCACCGCCCGTCCTCCTTCTCTCTCCACCACCATTTCCAACTCCT
CCTCACTCGCCTCCACATCCTCCGGCCCCTCCTCCACCAGCAGTGCCAAG
AAAGCAAGCTTCGCAGAATGCCTTTACAGAACCATGCTCAAAATGGACCA
GGGAAAAAAGGGTGAGATTCAAGAGGCGTTTCGTTATTTCAAATCTCACC
CGAAATTACCCCATGTGGAGGTGCAGGACAAGTTGATCCAGTTGCTCGGG
AAAGACTTTGTCTCCCGGGCCTGGAAGGAGGCGCGGCGGTTGCTCGAGGA
AGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAG
GAGGAGGAAGAGGAGGAGGAGGCGCGCTCTCCTCGCCAGAACAGGGGAGA
AGGGAGCAGGGAGGGATATCGCGGCAGCAGCACCAGCAGCACCAGCAGCA
GATGGCTGCACGACATCAGCAATATCCGCAACATGTGGTGGTGGAGATGC
TGGACGACCTGGATTTGGTGAACGCACAGCAGGCGACGGGGAACGACATC
GAGACGGACATCACACGGGAGGCAGATCTGGAGTCGATCGTCCGAGAAGA
AGACGAGGGGCTGCTGGAGCACCTACAACCGATGCGGATGCTCTCGGCGG
TGGAAGCGGAGAAATGGGAAAATAAGCATGTGATGGATGGGGAGCTCTGT
CGAAAGGCTTTGGCGAGGGCAGAGAGGAAAGAGGGGGACAGGTTGGCCGC
GCTAGCGATGGGAGGGATGGGCGCAGGTAAGAAGAGCGTGGGGAAGGAGG
AGGGGGGAGAGAACGAGGTGGAGGACGAGGTGGAGGAGGACGAGGAGGCG
GAGGGTCCAGGGAGGAAGTGGGCAGTGGAAGCGTTGTCGAGGGCTTGCCA
GGACTATGCGACTGGCTTGTTGGAGGACTTGGTGAGAATTGCGCGGGGGA
GAGGGAACGACGACGTGAGGCATTTGATTCGAGAGGGGGCGACATTGGGG
GCAGGAGAGCCCATGGTGGTTAAATTTTTACAGCCTTACAAGATGCCGTG
GGCGGGGGGGGCATTAGCGGAGGATGAACAACAGCAGCAGCAACAGATGC
AGCAGCAGCAGCAGTTGCAGCAGCAGGGCCAGACGAGGGGGTTGAGAGCG
GAGAAACCCCACGTTTTGACAAGGGCGGATGTGGTGCGGTACTTGGCGAG
AAAGCAGAGAAAAGGGAGGGGGAGAGGGGGGCAGGGGCACGATCGGTTGA
TAGATTTGCTGGCGACAACGAGTGTGAAGAGGGTGGATTTGGTGCTGGGG
AGAGGAGAAAGAGGAGGGGGAGGAGGAAGGGGAGGAAGAGGAGGGGATGG
GAGAGGCTAAGCGACTGTATTTCTAAAGAGAAGGAGGTGAAGGAAAAGAA
GAATATCGAGCGCGTGAGCCTGTCTTTTCTGTCTGCTAAACCAACTGCGG
GCGCTCGGCCTCTTTTCGGC back to topprotein sequence of NO02G04520.1 >NO02G04520.1-protein ID=NO02G04520.1-protein|Name=NO02G04520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=653bp
MEVDVAALLQEEDDEESSDVPIPRAVPPPGAYPPQLLGPPPRSGGGGPYV
RPSTAPYNNPSGDVPMPFSGAFVPPGQMQQTQLGTFAQAHVHPQQPRQQQ
QYAQHPQPTGSMPSVQQQQQQQHYQYPQQPTVKSQQPHLQQQQQQQQLQQ
QQQRQQQQMQQQLQQRQQQLQHQQRLQRPEQQQQQHQQQQRSQPPLQRTA
PPTARPPSLSTTISNSSSLASTSSGPSSTSSAKKASFAECLYRTMLKMDQ
GKKGEIQEAFRYFKSHPKLPHVEVQDKLIQLLGKDFVSRAWKEARRLLEE
GGGGGGGGGGGEGGRGGGGRGGGGALSSPEQGRREQGGISRQQHQQHQQQ
MAARHQQYPQHVVVEMLDDLDLVNAQQATGNDIETDITREADLESIVREE
DEGLLEHLQPMRMLSAVEAEKWENKHVMDGELCRKALARAERKEGDRLAA
LAMGGMGAGKKSVGKEEGGENEVEDEVEEDEEAEGPGRKWAVEALSRACQ
DYATGLLEDLVRIARGRGNDDVRHLIREGATLGAGEPMVVKFLQPYKMPW
AGGALAEDEQQQQQQMQQQQQLQQQGQTRGLRAEKPHVLTRADVVRYLAR
KQRKGRGRGGQGHDRLIDLLATTSVKRVDLVLGRGERGGGGGRGGRGGDG
RG* back to topmRNA from alignment at chr2:1223798..1226167- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G04520.1 ID=NO02G04520.1|Name=NO02G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp|location=Sequence derived from alignment at chr2:1223798..1226167- (Nannochloropsis oceanica)
GGCTTTGCTTTGGCTGCCTGGGGCGACTATTATTTAATTTTTGTAGCTCG
GTCGATTATTCGGACTCCAAAGGTCGTCACGGTTGCTGTCCTTCATTGCA
TCATCACACTTCATCAGTACCCTATTAACACGGACGCAACGCAACACAAC
TAGTCCTATGTACAGTCTTTCACAGTCAAGAAGTTGTGCCGATCATGCTA
GCCTTCCTTGCGAGCCTTTTCGTTGAATTTTCGTCACGATCAGCCTCCTC
CATTTTCTCACCACCATCATATTGTATGCAGCCCCACGCACGCATAGGGC
CATGGAAGTCGATGTTGCCGCCTTGCTCCAAGAAGAGGACGATGAGGAGA
GCTCCGACGTGCCAATCCCTCGAGCAGTCCCACCTCCTGGCGCCTACCCA
CCCCAGCTTCTGGGCCCACCGCCTCGATCTGGGGGAGGAGGACCTTATGT
TCGTCCTTCGACAGCCCCCTACAACAATCCCTCGGGTGACGTCCCCATGC
CCTTCTCAGGTGCCTTTGTCCCTCCAGGTCAAATGCAACAGACGCAATTA
GGCACCTTTGCCCAAGCACACGTCCATCCCCAGCAGCCGCGGCAGCAGCA
GCAGTATGCCCAGCACCCTCAACCGACAGGTTCCATGCCATCCGTGCAGC
AGCAGCAGCAGCAACAGCATTATCAATATCCACAGCAGCCGACGGTCAAG
TCTCAGCAGCCCCATTTGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGCA
ACAGCAACAGCGACAGCAACAACAAATGCAGCAGCAGCTCCAGCAGCGGC
AGCAACAGCTCCAGCATCAACAGCGCCTACAACGACCAGAACAGCAGCAG
CAGCAGCATCAACAGCAACAGCGATCCCAACCGCCACTCCAACGCACTGC
CCCTCCCACCGCCCGTCCTCCTTCTCTCTCCACCACCATTTCCAACTCCT
CCTCACTCGCCTCCACATCCTCCGGCCCCTCCTCCACCAGCAGTGCCAAG
AAAGCAAGCTTCGCAGAATGCCTTTACAGAACCATGCTCAAAATGGACCA
GGGAAAAAAGGGTGAGATTCAAGAGGCGTTTCGTTATTTCAAATCTCACC
CGAAATTACCCCATGTGGAGGTGCAGGACAAGTTGATCCAGTTGCTCGGG
AAAGACTTTGTCTCCCGGGCCTGGAAGGAGGCGCGGCGGTTGCTCGAGGA
AGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAG
GAGGAGGAAGAGGAGGAGGAGGCGCGCTCTCCTCGCCAGAACAGGGGAGA
AGGGAGCAGGGAGGGATATCGCGGCAGCAGCACCAGCAGCACCAGCAGCA
GATGGCTGCACGACATCAGCAATATCCGCAACATGTGGTGGTGGAGATGC
TGGACGACCTGGATTTGGTGAACGCACAGCAGGCGACGGGGAACGACATC
GAGACGGACATCACACGGGAGGCAGATCTGGAGTCGATCGTCCGAGAAGA
AGACGAGGGGCTGCTGGAGCACCTACAACCGATGCGGATGCTCTCGGCGG
TGGAAGCGGAGAAATGGGAAAATAAGCATGTGATGGATGGGGAGCTCTGT
CGAAAGGCTTTGGCGAGGGCAGAGAGGAAAGAGGGGGACAGGTTGGCCGC
GCTAGCGATGGGAGGGATGGGCGCAGGTAAGAAGAGCGTGGGGAAGGAGG
AGGGGGGAGAGAACGAGGTGGAGGACGAGGTGGAGGAGGACGAGGAGGCG
GAGGGTCCAGGGAGGAAGTGGGCAGTGGAAGCGTTGTCGAGGGCTTGCCA
GGACTATGCGACTGGCTTGTTGGAGGACTTGGTGAGAATTGCGCGGGGGA
GAGGGAACGACGACGTGAGGCATTTGATTCGAGAGGGGGCGACATTGGGG
GCAGGAGAGCCCATGGTGGTTAAATTTTTACAGCCTTACAAGATGCCGTG
GGCGGGGGGGGCATTAGCGGAGGATGAACAACAGCAGCAGCAACAGATGC
AGCAGCAGCAGCAGTTGCAGCAGCAGGGCCAGACGAGGGGGTTGAGAGCG
GAGAAACCCCACGTTTTGACAAGGGCGGATGTGGTGCGGTACTTGGCGAG
AAAGCAGAGAAAAGGGAGGGGGAGAGGGGGGCAGGGGCACGATCGGTTGA
TAGATTTGCTGGCGACAACGAGTGTGAAGAGGGTGGATTTGGTGCTGGGG
AGAGGAGAAAGAGGAGGGGGAGGAGGAAGGGGAGGAAGAGGAGGGGATGG
GAGAGGCTAAGCGACTGTATTTCTAAAGAGAAGGAGGTGAAGGAAAAGAA
GAATATCGAGCGCGTGAGCCTGTCTTTTCTGTCTGCTAAACCAACTGCGG
GCGCTCGGCCTCTTTTCGGC back to topCoding sequence (CDS) from alignment at chr2:1223798..1226167- >NO02G04520.1 ID=NO02G04520.1|Name=NO02G04520.1|organism=Nannochloropsis oceanica|type=CDS|length=1959bp|location=Sequence derived from alignment at chr2:1223798..1226167- (Nannochloropsis oceanica)
ATGGAAGTCGATGTTGCCGCCTTGCTCCAAGAAGAGGACGATGAGGAGAG
CTCCGACGTGCCAATCCCTCGAGCAGTCCCACCTCCTGGCGCCTACCCAC
CCCAGCTTCTGGGCCCACCGCCTCGATCTGGGGGAGGAGGACCTTATGTT
CGTCCTTCGACAGCCCCCTACAACAATCCCTCGGGTGACGTCCCCATGCC
CTTCTCAGGTGCCTTTGTCCCTCCAGGTCAAATGCAACAGACGCAATTAG
GCACCTTTGCCCAAGCACACGTCCATCCCCAGCAGCCGCGGCAGCAGCAG
CAGTATGCCCAGCACCCTCAACCGACAGGTTCCATGCCATCCGTGCAGCA
GCAGCAGCAGCAACAGCATTATCAATATCCACAGCAGCCGACGGTCAAGT
CTCAGCAGCCCCATTTGCAGCAGCAGCAGCAGCAGCAGCAGCTCCAGCAA
CAGCAACAGCGACAGCAACAACAAATGCAGCAGCAGCTCCAGCAGCGGCA
GCAACAGCTCCAGCATCAACAGCGCCTACAACGACCAGAACAGCAGCAGC
AGCAGCATCAACAGCAACAGCGATCCCAACCGCCACTCCAACGCACTGCC
CCTCCCACCGCCCGTCCTCCTTCTCTCTCCACCACCATTTCCAACTCCTC
CTCACTCGCCTCCACATCCTCCGGCCCCTCCTCCACCAGCAGTGCCAAGA
AAGCAAGCTTCGCAGAATGCCTTTACAGAACCATGCTCAAAATGGACCAG
GGAAAAAAGGGTGAGATTCAAGAGGCGTTTCGTTATTTCAAATCTCACCC
GAAATTACCCCATGTGGAGGTGCAGGACAAGTTGATCCAGTTGCTCGGGA
AAGACTTTGTCTCCCGGGCCTGGAAGGAGGCGCGGCGGTTGCTCGAGGAA
GGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAGG
AGGAGGAAGAGGAGGAGGAGGCGCGCTCTCCTCGCCAGAACAGGGGAGAA
GGGAGCAGGGAGGGATATCGCGGCAGCAGCACCAGCAGCACCAGCAGCAG
ATGGCTGCACGACATCAGCAATATCCGCAACATGTGGTGGTGGAGATGCT
GGACGACCTGGATTTGGTGAACGCACAGCAGGCGACGGGGAACGACATCG
AGACGGACATCACACGGGAGGCAGATCTGGAGTCGATCGTCCGAGAAGAA
GACGAGGGGCTGCTGGAGCACCTACAACCGATGCGGATGCTCTCGGCGGT
GGAAGCGGAGAAATGGGAAAATAAGCATGTGATGGATGGGGAGCTCTGTC
GAAAGGCTTTGGCGAGGGCAGAGAGGAAAGAGGGGGACAGGTTGGCCGCG
CTAGCGATGGGAGGGATGGGCGCAGGTAAGAAGAGCGTGGGGAAGGAGGA
GGGGGGAGAGAACGAGGTGGAGGACGAGGTGGAGGAGGACGAGGAGGCGG
AGGGTCCAGGGAGGAAGTGGGCAGTGGAAGCGTTGTCGAGGGCTTGCCAG
GACTATGCGACTGGCTTGTTGGAGGACTTGGTGAGAATTGCGCGGGGGAG
AGGGAACGACGACGTGAGGCATTTGATTCGAGAGGGGGCGACATTGGGGG
CAGGAGAGCCCATGGTGGTTAAATTTTTACAGCCTTACAAGATGCCGTGG
GCGGGGGGGGCATTAGCGGAGGATGAACAACAGCAGCAGCAACAGATGCA
GCAGCAGCAGCAGTTGCAGCAGCAGGGCCAGACGAGGGGGTTGAGAGCGG
AGAAACCCCACGTTTTGACAAGGGCGGATGTGGTGCGGTACTTGGCGAGA
AAGCAGAGAAAAGGGAGGGGGAGAGGGGGGCAGGGGCACGATCGGTTGAT
AGATTTGCTGGCGACAACGAGTGTGAAGAGGGTGGATTTGGTGCTGGGGA
GAGGAGAAAGAGGAGGGGGAGGAGGAAGGGGAGGAAGAGGAGGGGATGGG
AGAGGCTAA back to top
|