NO02G04300, NO02G04300 (gene) Nannochloropsis oceanica

Overview
NameNO02G04300
Unique NameNO02G04300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1093
Alignment locationchr2:1165707..1166799 -

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Properties
Property NameValue
DescriptiontRNA pseudouridine synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1165707..1166799 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0003824catalytic activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
Homology
BLAST of NO02G04300 vs. NCBI_GenBank
Match: EWM30224.1 (trna pseudouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 474.9 bits (1221), Expect = 1.900e-130
Identity = 228/300 (76.00%), Postives = 250/300 (83.33%), Query Frame = 0
Query:   10 DYTPRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310
            DYTPR WWK+PTVPMTRFVARLAY+GTHFNGWQ+QVKSRTVQLEVER++N++LA  P S LLDKVCIRAVAAGRTDAGVHARGQVIHFDYP VA     + EFE  LN  L  D+R+WN+SHAPPPR  NLA QGDWHAMYNS  KLYTYRFSTR+VADP  R     VPRGE LDL KLA++ SIFEG HDYQNFANRL HKRRMSK+GEEF+T R+V SV+LV E   EY + V LDGALQRMVRNM+GGLW+VARGDM   ELRRALDGPLY  GRSPIRAAPAHGLT EWVYYDD+
Sbjct:   46 DYTPRAWWKNPTVPMTRFVARLAYDGTHFNGWQFQVKSRTVQLEVERAINSTLAACPDSDLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPAVAAGRFTVQEFETKLNEGLVSDVRLWNVSHAPPPREKNLAVQGDWHAMYNSRSKLYTYRFSTRAVADPLHRNYCCAVPRGEALDLRKLAELTSIFEGKHDYQNFANRLQHKRRMSKRGEEFSTVRHVRSVELVSEAPEEYAIHVLLDGALQRMVRNMVGGLWAVARGDMSEAELRRALDGPLYAKGRSPIRAAPAHGLTLEWVYYDDF 345          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005854069.1 (trna pseudouridine synthase a, partial [Nannochloropsis gaditana CCMP526] >EKU22290.1 trna pseudouridine synthase a, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 298.9 bits (764), Expect = 1.800e-77
Identity = 142/187 (75.94%), Postives = 155/187 (82.89%), Query Frame = 0
Query:  123 DIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310
            D+R+WN+SHAPPPR  NLA QGDWHAMYNS  KLYTYRFSTR+VADP  R     VPRGE LDL KLA++ SIFEG HDYQNFANRL HKRRMSKKGEEF+T R+V SV+LV E   EY + V LDGALQRMVRNM+GGLW+VARGDM   ELRRALDGPLY  GRSPIRAAPAHGLT EWVYYDD+
Sbjct:    3 DVRLWNVSHAPPPREKNLAVQGDWHAMYNSRSKLYTYRFSTRAVADPLHRNYCCAVPRGEALDLHKLAELTSIFEGKHDYQNFANRLQHKRRMSKKGEEFSTVRHVRSVELVSEAPEEYAIHVLLDGALQRMVRNMVGGLWAVARGDMSEAELRRALDGPLYAKGRSPIRAAPAHGLTLEWVYYDDF 189          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: CBJ31003.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 177.6 bits (449), Expect = 6.100e-41
Identity = 112/295 (37.97%), Postives = 155/295 (52.54%), Query Frame = 0
Query:   25 TRFVARLAYEGTHFNGWQYQVKS-RTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQR--RTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKG--EEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDME---ADEL--RRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310
            TRFV+R+ Y+GT++ G+Q Q     TVQ  +E++L+    T           +  VAAGRTD GVH+ GQ +HFD P      ++L +    +N  +P D+RVWN+S APP     +     W +M N+ GK Y+YR     V  P  R  R   +   G  +++D L +      G HD+  F+N +  +  + K+    EF T R V S +++ E  G  RLD  LDGAL RMVRNM+G L +VA G +E    DE+   R  D  L       I AAPAHGLT + V YD Y
Sbjct:  137 TRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQT----------YVPVVAAGRTDTGVHSVGQAVHFDLPN---ANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRL-------IYAAPAHGLTLDTVLYDGY 411          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005705360.1 (tRNA pseudouridine synthase A [Galdieria sulphuraria] >EME28840.1 tRNA pseudouridine synthase A [Galdieria sulphuraria])

HSP 1 Score: 175.3 bits (443), Expect = 3.000e-40
Identity = 108/284 (38.03%), Postives = 153/284 (53.87%), Query Frame = 0
Query:   26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310
            R+  R+AY+GT F+GWQ+Q K R+VQ  +E+ L+  L  S          IR + AGRTD+GVHARGQV HFD     V+  +    E  LN  L  DIRV+++    P   +    + +WHA++++  K+Y+YRFS     DP +RR R    R    +L++L     +F GTHD+ +F +R    + M K        R +  + LV E    YRL+  L+GAL RM+RN+   L+ VA  ++  D+L   L        R   +AAPAHGL  E V YDDY
Sbjct:   73 RYRLRVAYDGTDFSGWQFQEKRRSVQGVLEQVLSKRLNRS----------IRIIGAGRTDSGVHARGQVAHFD----TVSFSDCPHLEYTLNRMLSGDIRVYDLQQKEPISSD---PRNNWHAIFSARKKVYSYRFSIAKELDPLERRFRFHFYR--RCNLERLYDATKVFLGTHDFTSFCSRNTEMKEMEK-----NMCRTIYRIDLVHESGDSYRLEYELNGALYRMIRNITSSLFFVASDELTLDDLNEILHA---KDRRRAPKAAPAHGLCLERVIYDDY 329          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_009034438.1 (hypothetical protein AURANDRAFT_58785 [Aureococcus anophagefferens] >EGB10860.1 hypothetical protein AURANDRAFT_58785 [Aureococcus anophagefferens])

HSP 1 Score: 164.5 bits (415), Expect = 5.400e-37
Identity = 114/287 (39.72%), Postives = 146/287 (50.87%), Query Frame = 0
Query:   25 TRFVARLAYEGTHFNGWQYQV-KSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFST-RSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310
            TR+  R+AY+GT F GWQ Q   +RTVQ E    LNA+L T           I  + A RTDAGVHARGQ  H D P   +    L   E  +N  LP D RV ++  AP P+         WHA+ N+ GK Y YR +  R  ADP  R  R  V    ++D  +L    S F G HD+  FAN   +   +   G   +T R + S  L+ E  G+  L   LDGAL +MVRN++G   +VA G +  D +  AL  P      +P +AAPA GL  E VYYDDY
Sbjct:   33 TRYALRVAYDGTRFKGWQVQPGGARTVQGE----LNAALRTR-----FGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHVAY-RDVDFGRLDDALSCFVGEHDFAAFAN---NAPGLDPSGAARSTTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAI-PALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_002180785.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47437.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 161.4 bits (407), Expect = 4.500e-36
Identity = 113/311 (36.33%), Postives = 161/311 (51.77%), Query Frame = 0
Query:   24 MTRFVARLAYEGTHFNGWQYQVKSRTV-------------QLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQG---DWHAMYNSCGKLYTYRFSTRSVADPFQRRTR-----VTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKE-REGEYRLDVRLDGALQRMVRNMMGGLWSVARGDM--EADELRRALDGPLYPPGR--SPIRAAPAHGLTCEWVYYDD 309
            + R+ AR+AY+GT F G+Q Q  ++ V             + + +R++   L T  ++     V  R VAAGRTDAGVHARGQ IHFD   V+ T  +    E  L   LP D+ +WN+  AP  R   +  Q     W+ MY++  KLY+YR ST +V DP  R+ R     V      +  L +L ++   +EGTHD++ FA+ +    + S       T R V SV +V E  EG+ R+D  L GAL + VRNM+G +    RG++  E+D LR   D       R  +P + AP  GLT E VY+ D
Sbjct:   36 VVRYRARVAYDGTSFQGFQIQGSNKVVDDKNCNGITHQNRKDKQQRTVQGELETVLSTRWNQPV--RVVAAGRTDAGVHARGQAIHFDV-NVSETPTDHASLERSLARMLPTDVTLWNLQFAPSARTKLVDGQERVLPWNVMYDNTHKLYSYRLSTAAVMDPLSRQHRWHPDNVDAYVVGKAGLAQLTRLLKHYEGTHDFRAFASAMEQLEKHS--DGPIDTVRTVYSVNVVPEANEGDVRIDFVLKGALYKQVRNMVGTVLETCRGEIMKESDMLRLLQDATASGLSRADNPSKPAPPQGLTLENVYFGD 341          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: XP_005718675.1 (unnamed protein product [Chondrus crispus] >CDF38770.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 160.6 bits (405), Expect = 7.700e-36
Identity = 112/305 (36.72%), Postives = 151/305 (49.51%), Query Frame = 0
Query:   26 RFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGE--FEAGLNARLPPDIRVWNISHAP---PPRV-----NNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDK--LAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTK------RYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDME---ADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310
            R  AR+AY+GT + GWQYQ    TVQ  +E +L      +          IR V A RTD GVHARGQ +HFD P          E  F   LN  LPPD+RV  +S AP   P +V     N   A   WHA+YN+ GKLYTYR ST  V DP  R  R    R  +    +  L + ++ F G+HD+  F N        +     F         R++ S  ++ E  G YR++  ++GA+ RM+RN+MG + SV+ G M+    D L  + D  L P      ++APA GL  E V YD++
Sbjct:   55 RIRARVAYDGTLYRGWQYQTDQPTVQGALEDALRRKFGHT----------IRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTN-------STNPPPGFVPPVLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFASKDRRLVP------KSAPAKGLCLEKVIYDEW 336          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: GAX27892.1 (tRNA pseudouridine38-40 synthase [Fistulifera solaris])

HSP 1 Score: 156.4 bits (394), Expect = 1.500e-34
Identity = 109/303 (35.97%), Postives = 152/303 (50.17%), Query Frame = 0
Query:   26 RFVARLAYEGTHFNGWQYQVK-SRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNL--AAQGDWHAMYNSCGKLYTYRFSTRSVADPFQR--RTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKERE--GEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDG----------PLYPPGR---SPIRAAPAHGLTCEWVYYDD 309
            R+ AR+AY+G  F+G+Q Q +  RTVQ  +E  L   L  S          +R V AGRTD GVHARGQ IHFD    +   + L + E  +NA LP D+ +WN+S AP         + Q  W+ +YNS GKLY+YR     V  P +R  R       G+ +D+  L ++ + +EGTHD++ FA  L   +R S  G   +T R V S   + E E  G YR++  L GAL + VRNM+G     +R  +  +     L G          P     R   +  + AP  GLT E VY+D+
Sbjct:   23 RYRARVAYDGAGFHGFQLQPEGKRTVQGCLEDVLGQRLGQS----------VRLVGAGRTDTGVHARGQAIHFDLH--SPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALEANQRRS--GRTVSTVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFDE 311          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_016429912.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina sp. HGH0030] >EPD49553.1 tRNA pseudouridine(38-40) synthase [Paenisporosarcina sp. HGH0030])

HSP 1 Score: 149.1 bits (375), Expect = 2.300e-32
Identity = 97/285 (34.04%), Postives = 141/285 (49.47%), Query Frame = 0
Query:   24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            M R  A + Y+G  F G+Q Q  +RTVQLE+ER L         + +     +R VA+GRTDAGVHA GQVIHFD       E+    ++  LN +LP DIRV ++               D+HA Y + GK+Y Y++    V  PF+R   V +P G   D++++ + A  F GTHD+ +F          S + E     R +  ++L++   GE  + +  DG L  MVR + G LW V  G  E  ++   L        +   + APAHGL  E V+Y +
Sbjct:    1 MKRLKAIIMYDGYGFAGYQVQPNARTVQLELERVL---------TKMHKGTIVRVVASGRTDAGVHATGQVIHFDTDLQFPIER----WQRALNVQLPGDIRVVSVEE----------VSSDFHARYGTSGKVYRYKWGLGDVESPFKRHYVVYMP-GINPDIERMREAAQAFLGTHDFTSFC---------SARTEVVDRVRTIKRLELLENEHGELHMIIEGDGFLYNMVRIIAGNLWEVGIGRREPGDMALMLAA---MDRKKAGKTAPAHGLYLESVFYSE 249          
BLAST of NO02G04300 vs. NCBI_GenBank
Match: WP_075620168.1 (tRNA pseudouridine(38-40) synthase TruA [Paenisporosarcina indica])

HSP 1 Score: 148.3 bits (373), Expect = 4.000e-32
Identity = 96/285 (33.68%), Postives = 142/285 (49.82%), Query Frame = 0
Query:   24 MTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDD 309
            M R  A + Y+G+ F G+Q Q   RTVQLE+ER L         + +   V +R VA+GRTDAGVHA GQVIHFD       +  +  ++  LN +LP DIRV ++               D+HA Y + GK+Y Y++    V  PF+R   V +P G ++++ ++ + A  F G HD+ +F          S + E     R ++ + L++    E  + +  DG L  MVR + G LW V  G  E  E+   L+       +   + APAHGL  E V+Y D
Sbjct:    1 MKRLKAVIMYDGSGFAGYQVQPNERTVQLELERVL---------TKMHKGVKVRVVASGRTDAGVHATGQVIHFD----TDLQFPIDRWQRALNVQLPGDIRVVSVQE----------VSSDFHARYGTLGKVYRYKWCLGDVESPFKRHYVVHMP-GAKVNIPRMREAAQAFLGVHDFTSFC---------SARTEVVDRIRTISRLDLIEVERDELHMIIEGDGFLYNMVRIIAGNLWEVGIGRREPSEMATILEA---IDRKKAGKTAPAHGLYLENVFYSD 249          
The following BLAST results are available for this feature:
BLAST of NO02G04300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30224.11.900e-13076.00trna pseudouridine synthase a [Nannochloropsis gad... [more]
XP_005854069.11.800e-7775.94trna pseudouridine synthase a, partial [Nannochlor... [more]
CBJ31003.16.100e-4137.97conserved unknown protein [Ectocarpus siliculosus][more]
XP_005705360.13.000e-4038.03tRNA pseudouridine synthase A [Galdieria sulphurar... [more]
XP_009034438.15.400e-3739.72hypothetical protein AURANDRAFT_58785 [Aureococcus... [more]
XP_002180785.14.500e-3636.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005718675.17.700e-3636.72unnamed protein product [Chondrus crispus] >CDF387... [more]
GAX27892.11.500e-3435.97tRNA pseudouridine38-40 synthase [Fistulifera sola... [more]
WP_016429912.12.300e-3234.04tRNA pseudouridine(38-40) synthase TruA [Paenispor... [more]
WP_075620168.14.000e-3233.68tRNA pseudouridine(38-40) synthase TruA [Paenispor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007092NSK007092Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04300.1NO02G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575043gene_1019Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g47gene419Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04300.1NO02G04300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04300 ID=NO02G04300|Name=NO02G04300|organism=Nannochloropsis oceanica|type=gene|length=1093bp
ATGAGACCATCACGACCTCGCCGgtaagactcacacgaagacgacctcca
atgtcatgacgactgaagtaaagaagtggtcgtcccgatggagtcaggag
ctaagcttttgcctgctcctgctcgcaagtattgtaagagtagacgcttg
gcaggagatcagccctcacatgtcgacctctctcagTACGGACTATACAC
CTAGGCCCTGGTGGAAGCACCCCACCGTCCCTATGACCCGTTTTGTGGCT
CGGCTTGCCTACGAGGGGACGCATTTTAATGGCTGGCAGTACCAAGTCAA
AAGCCGGACAGTCCAGCTCGAGGTGGAACGCTCCCTCAATGCCTCACTCG
CCACCAGCCCTGCTTCCTCTCTACTTGACAAAGTTTGCATCCGTGCTGTT
GCCGCAGGGAGGACCGACGCAGGCGTGCACGCCCGGGGACAAGTCATCCA
TTTTGATTATCCCACCGTTGCTGTGACGGAGCAAAATCTCGGGGAATTTG
AAGCAGGGCTGAATGCTCGCCTCCCTCCAGACATTCGCGTATGGAATATC
TCTCATGCTCCTCCTCCCCGTGTGAACAATTTGGCCGCCCAAGGCGACTG
GCATGCGATGTACAATAGTTGTGGCAAGCTCTACACGTACCGTTTCTCCA
CTCGTTCAGTCGCAGATCCTTTCCAGCGACGGACACGGGTGACAGTGCCT
CGAGGGGAGGAATTAGATTTGGACAAGCTTGCGAAGATGGCAAGCATTTT
TGAAGGCACGCATGACTACCAGAATTTTGCCAATCGTCTTTTACACAAAC
GAAGGATGAGCAAGAAGGGAGAGGAATTCACGACGAAGCGGTACGTGGCC
TCCGTACAGCTGGTGAAGGAAAGAGAGGGTGAGTATAGGTTGGATGTCCG
TCTGGACGGTGCTCTGCAGAGAATGGTAAGGAACATGATGGGGGGGCTAT
GGTCGGTCGCAAGAGGGGACATGGAGGCGGATGAGTTGAGGAGAGCGTTG
GACGGTCCACTGTATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGCCTGC
GCATGGGCTGACGTGTGAATGGGTGTATTACGACGATTATTGA
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protein sequence of NO02G04300.1

>NO02G04300.1-protein ID=NO02G04300.1-protein|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRPSRPRRTDYTPRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTV
QLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYP
TVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMY
NSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTH
DYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGA
LQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLT
CEWVYYDDY*
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Synonyms
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