NO02G04300.1, NO02G04300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04300.1
Unique NameNO02G04300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr2:1165707..1166799 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1165707..1166799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G04300.1 vs.
Match: EWM30224.1 (trna pseudouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 474.9 bits (1221), Expect = 1.900e-130
Identity = 228/300 (76.00%), Postives = 250/300 (83.33%), Query Frame = 0 
Query:   10 DYTPRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTVQLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPTVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMYNSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTHDYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGALQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLTCEWVYYDDY 310
            DYTPR WWK+PTVPMTRFVARLAY+GTHFNGWQ+QVKSRTVQLEVER++N++LA  P S LLDKVCIRAVAAGRTDAGVHARGQVIHFDYP VA     + EFE  LN  L  D+R+WN+SHAPPPR  NLA QGDWHAMYNS  KLYTYRFSTR+VADP  R     VPRGE LDL KLA++ SIFEG HDYQNFANRL HKRRMSK+GEEF+T R+V SV+LV E   EY + V LDGALQRMVRNM+GGLW+VARGDM   ELRRALDGPLY  GRSPIRAAPAHGLT EWVYYDD+
Sbjct:   46 DYTPRAWWKNPTVPMTRFVARLAYDGTHFNGWQFQVKSRTVQLEVERAINSTLAACPDSDLLDKVCIRAVAAGRTDAGVHARGQVIHFDYPAVAAGRFTVQEFETKLNEGLVSDVRLWNVSHAPPPREKNLAVQGDWHAMYNSRSKLYTYRFSTRAVADPLHRNYCCAVPRGEALDLRKLAELTSIFEGKHDYQNFANRLQHKRRMSKRGEEFSTVRHVRSVELVSEAPEEYAIHVLLDGALQRMVRNMVGGLWAVARGDMSEAELRRALDGPLYAKGRSPIRAAPAHGLTLEWVYYDDF 345
The following BLAST results are available for this feature:
BLAST of NO02G04300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30224.11.900e-13076.00trna pseudouridine synthase a [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04300NO02G04300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04300.1NO02G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04300.1.cds1NO02G04300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04300.1.cds2NO02G04300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04300.1 ID=NO02G04300.1|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
ATGAGACCATCACGACCTCGCCGTACGGACTATACACCTAGGCCCTGGTG
GAAGCACCCCACCGTCCCTATGACCCGTTTTGTGGCTCGGCTTGCCTACG
AGGGGACGCATTTTAATGGCTGGCAGTACCAAGTCAAAAGCCGGACAGTC
CAGCTCGAGGTGGAACGCTCCCTCAATGCCTCACTCGCCACCAGCCCTGC
TTCCTCTCTACTTGACAAAGTTTGCATCCGTGCTGTTGCCGCAGGGAGGA
CCGACGCAGGCGTGCACGCCCGGGGACAAGTCATCCATTTTGATTATCCC
ACCGTTGCTGTGACGGAGCAAAATCTCGGGGAATTTGAAGCAGGGCTGAA
TGCTCGCCTCCCTCCAGACATTCGCGTATGGAATATCTCTCATGCTCCTC
CTCCCCGTGTGAACAATTTGGCCGCCCAAGGCGACTGGCATGCGATGTAC
AATAGTTGTGGCAAGCTCTACACGTACCGTTTCTCCACTCGTTCAGTCGC
AGATCCTTTCCAGCGACGGACACGGGTGACAGTGCCTCGAGGGGAGGAAT
TAGATTTGGACAAGCTTGCGAAGATGGCAAGCATTTTTGAAGGCACGCAT
GACTACCAGAATTTTGCCAATCGTCTTTTACACAAACGAAGGATGAGCAA
GAAGGGAGAGGAATTCACGACGAAGCGGTACGTGGCCTCCGTACAGCTGG
TGAAGGAAAGAGAGGGTGAGTATAGGTTGGATGTCCGTCTGGACGGTGCT
CTGCAGAGAATGGTAAGGAACATGATGGGGGGGCTATGGTCGGTCGCAAG
AGGGGACATGGAGGCGGATGAGTTGAGGAGAGCGTTGGACGGTCCACTGT
ATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGCCTGCGCATGGGCTGACG
TGTGAATGGGTGTATTACGACGATTATTGA
back to top

protein sequence of NO02G04300.1

>NO02G04300.1-protein ID=NO02G04300.1-protein|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRPSRPRRTDYTPRPWWKHPTVPMTRFVARLAYEGTHFNGWQYQVKSRTV
QLEVERSLNASLATSPASSLLDKVCIRAVAAGRTDAGVHARGQVIHFDYP
TVAVTEQNLGEFEAGLNARLPPDIRVWNISHAPPPRVNNLAAQGDWHAMY
NSCGKLYTYRFSTRSVADPFQRRTRVTVPRGEELDLDKLAKMASIFEGTH
DYQNFANRLLHKRRMSKKGEEFTTKRYVASVQLVKEREGEYRLDVRLDGA
LQRMVRNMMGGLWSVARGDMEADELRRALDGPLYPPGRSPIRAAPAHGLT
CEWVYYDDY*
back to top

mRNA from alignment at chr2:1165707..1166799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04300.1 ID=NO02G04300.1|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp|location=Sequence derived from alignment at chr2:1165707..1166799- (Nannochloropsis oceanica)
ATGAGACCATCACGACCTCGCCGGTAAGACTCACACGAAGACGACCTCCA
ATGTCATGACGACTGAAGTAAAGAAGTGGTCGTCCCGATGGAGTCAGGAG
CTAAGCTTTTGCCTGCTCCTGCTCGCAAGTATTGTAAGAGTAGACGCTTG
GCAGGAGATCAGCCCTCACATGTCGACCTCTCTCAGTACGGACTATACAC
CTAGGCCCTGGTGGAAGCACCCCACCGTCCCTATGACCCGTTTTGTGGCT
CGGCTTGCCTACGAGGGGACGCATTTTAATGGCTGGCAGTACCAAGTCAA
AAGCCGGACAGTCCAGCTCGAGGTGGAACGCTCCCTCAATGCCTCACTCG
CCACCAGCCCTGCTTCCTCTCTACTTGACAAAGTTTGCATCCGTGCTGTT
GCCGCAGGGAGGACCGACGCAGGCGTGCACGCCCGGGGACAAGTCATCCA
TTTTGATTATCCCACCGTTGCTGTGACGGAGCAAAATCTCGGGGAATTTG
AAGCAGGGCTGAATGCTCGCCTCCCTCCAGACATTCGCGTATGGAATATC
TCTCATGCTCCTCCTCCCCGTGTGAACAATTTGGCCGCCCAAGGCGACTG
GCATGCGATGTACAATAGTTGTGGCAAGCTCTACACGTACCGTTTCTCCA
CTCGTTCAGTCGCAGATCCTTTCCAGCGACGGACACGGGTGACAGTGCCT
CGAGGGGAGGAATTAGATTTGGACAAGCTTGCGAAGATGGCAAGCATTTT
TGAAGGCACGCATGACTACCAGAATTTTGCCAATCGTCTTTTACACAAAC
GAAGGATGAGCAAGAAGGGAGAGGAATTCACGACGAAGCGGTACGTGGCC
TCCGTACAGCTGGTGAAGGAAAGAGAGGGTGAGTATAGGTTGGATGTCCG
TCTGGACGGTGCTCTGCAGAGAATGGTAAGGAACATGATGGGGGGGCTAT
GGTCGGTCGCAAGAGGGGACATGGAGGCGGATGAGTTGAGGAGAGCGTTG
GACGGTCCACTGTATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGCCTGC
GCATGGGCTGACGTGTGAATGGGTGTATTACGACGATTATTGA
back to top

Coding sequence (CDS) from alignment at chr2:1165707..1166799-

>NO02G04300.1 ID=NO02G04300.1|Name=NO02G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr2:1165707..1166799- (Nannochloropsis oceanica)
ATGAGACCATCACGACCTCGCCGTACGGACTATACACCTAGGCCCTGGTG
GAAGCACCCCACCGTCCCTATGACCCGTTTTGTGGCTCGGCTTGCCTACG
AGGGGACGCATTTTAATGGCTGGCAGTACCAAGTCAAAAGCCGGACAGTC
CAGCTCGAGGTGGAACGCTCCCTCAATGCCTCACTCGCCACCAGCCCTGC
TTCCTCTCTACTTGACAAAGTTTGCATCCGTGCTGTTGCCGCAGGGAGGA
CCGACGCAGGCGTGCACGCCCGGGGACAAGTCATCCATTTTGATTATCCC
ACCGTTGCTGTGACGGAGCAAAATCTCGGGGAATTTGAAGCAGGGCTGAA
TGCTCGCCTCCCTCCAGACATTCGCGTATGGAATATCTCTCATGCTCCTC
CTCCCCGTGTGAACAATTTGGCCGCCCAAGGCGACTGGCATGCGATGTAC
AATAGTTGTGGCAAGCTCTACACGTACCGTTTCTCCACTCGTTCAGTCGC
AGATCCTTTCCAGCGACGGACACGGGTGACAGTGCCTCGAGGGGAGGAAT
TAGATTTGGACAAGCTTGCGAAGATGGCAAGCATTTTTGAAGGCACGCAT
GACTACCAGAATTTTGCCAATCGTCTTTTACACAAACGAAGGATGAGCAA
GAAGGGAGAGGAATTCACGACGAAGCGGTACGTGGCCTCCGTACAGCTGG
TGAAGGAAAGAGAGGGTGAGTATAGGTTGGATGTCCGTCTGGACGGTGCT
CTGCAGAGAATGGTAAGGAACATGATGGGGGGGCTATGGTCGGTCGCAAG
AGGGGACATGGAGGCGGATGAGTTGAGGAGAGCGTTGGACGGTCCACTGT
ATCCGCCTGGGAGGAGTCCAATCCGGGCGGCGCCTGCGCATGGGCTGACG
TGTGAATGGGTGTATTACGACGATTATTGA
back to top
Synonyms
Publications