NO02G04270, NO02G04270 (gene) Nannochloropsis oceanica

Overview
NameNO02G04270
Unique NameNO02G04270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length519
Alignment locationchr2:1162459..1162977 +

Link to JBrowse

Properties
Property NameValue
DescriptionHsbp1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1162459..1162977 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003714transcription corepressor activity
GO:0140110transcription regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR009643HS1-bd
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Homology
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BLAST of NO02G04270 vs. NCBI_GenBank
Match: XP_005854070.1 (hsbp1-like protein [Nannochloropsis gaditana CCMP526] >EKU22291.1 hsbp1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   78 EDVSGFVRSLLDEMQGRFEAMHKQMVSKIDSVGSKVDALDAEITELMREAG 129
            +D + +VRSLLD+MQ RFE M +Q++SKID+ GSKVDAL+AEI+ELM EAG
Sbjct:   70 DDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAG 120
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BLAST of NO02G04270 vs. NCBI_GenBank
Match: EWM30316.1 (hsbp1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   78 EDVSGFVRSLLDEMQGRFEAMHKQMVSKIDSVGSKVDALDAEITELMREAG 129
            +D + +VRSLLD+MQ RFE M +Q++SKID+ GSKVDAL+AEI+ELM EAG
Sbjct:   70 DDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAG 120
The following BLAST results are available for this feature:
BLAST of NO02G04270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854070.11.000e-866.67hsbp1-like protein [Nannochloropsis gaditana CCMP5... [more]
EWM30316.11.000e-866.67hsbp1-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007089NSK007089Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04270.1NO02G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575037gene_1016Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g50gene416Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04270.1NO02G04270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04270 ID=NO02G04270|Name=NO02G04270|organism=Nannochloropsis oceanica|type=gene|length=519bp
ATGTCGTCCTTGTTCAAGACCAATGCTGATAGCAACAAGACCGATGCCAT
GGCGGCCACCACAAAAGCTCCTACTACCATTGCATTCGAGTCCAAAACGT
CGACCAGCACGGCCAGCAACCGCAGCTTTGGCGTCCAGAAGCGCGCTCAG
GAATCGCAACCGCTGCCGGAGCAGCAGCAGCAGCAGTCACCGCAAGCACC
GCAGCCGAAGCAGGGTCATCCTCAGGGAGGAGAGGACGTCTCCGGATTTG
TCCGCTCCCTCCTCGACGAGATGCAGGGGCGCTTTGAAGCCATGCACAAA
CAAATGGTCTCCAAGATCGATTCTGTCGGGTCCAAGGTGGATGCGTTGGA
CGCGGAAATCACGGAGCTTATGCGTGAAGCCGGTGTTTGTGATGTGAAAA
GCGAACAGGAGCAGGATAGTTGGCAGATGGGGCAGGCAGGGGCGGGATAT
GAACCTGAGCCCATGAAAGTGGGAAAGGCCCCGGCTGGCATGCTTGGACA
CGAAACGACGAGCGAGTAG
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protein sequence of NO02G04270.1

>NO02G04270.1-protein ID=NO02G04270.1-protein|Name=NO02G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MSSLFKTNADSNKTDAMAATTKAPTTIAFESKTSTSTASNRSFGVQKRAQ
ESQPLPEQQQQQSPQAPQPKQGHPQGGEDVSGFVRSLLDEMQGRFEAMHK
QMVSKIDSVGSKVDALDAEITELMREAGVCDVKSEQEQDSWQMGQAGAGY
EPEPMKVGKAPAGMLGHETTSE*
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Synonyms
Publications