NO02G04270.1, NO02G04270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04270.1
Unique NameNO02G04270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length519
Alignment locationchr2:1162459..1162977 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1162459..1162977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04270.1 vs.
Match: EWM30316.1 (hsbp1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-9
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 0 
Query:   71 QGHPQGGEDVSGFVRSLLDEMQGRFEAMHKQMVSKIDSVGSKVDALDAEITELMREAG 129
            QGH    +D + +VRSLLD+MQ RFE M +Q++SKID+ GSKVDAL+AEI+ELM EAG
Sbjct:   63 QGHLARQDDPARYVRSLLDDMQSRFENMSQQILSKIDTFGSKVDALEAEISELMNEAG 120
The following BLAST results are available for this feature:
BLAST of NO02G04270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30316.11.500e-963.79hsbp1-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04270NO02G04270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04270.1NO02G04270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04270.1.cds1NO02G04270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04270.1 ID=NO02G04270.1|Name=NO02G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=519bp
ATGTCGTCCTTGTTCAAGACCAATGCTGATAGCAACAAGACCGATGCCAT
GGCGGCCACCACAAAAGCTCCTACTACCATTGCATTCGAGTCCAAAACGT
CGACCAGCACGGCCAGCAACCGCAGCTTTGGCGTCCAGAAGCGCGCTCAG
GAATCGCAACCGCTGCCGGAGCAGCAGCAGCAGCAGTCACCGCAAGCACC
GCAGCCGAAGCAGGGTCATCCTCAGGGAGGAGAGGACGTCTCCGGATTTG
TCCGCTCCCTCCTCGACGAGATGCAGGGGCGCTTTGAAGCCATGCACAAA
CAAATGGTCTCCAAGATCGATTCTGTCGGGTCCAAGGTGGATGCGTTGGA
CGCGGAAATCACGGAGCTTATGCGTGAAGCCGGTGTTTGTGATGTGAAAA
GCGAACAGGAGCAGGATAGTTGGCAGATGGGGCAGGCAGGGGCGGGATAT
GAACCTGAGCCCATGAAAGTGGGAAAGGCCCCGGCTGGCATGCTTGGACA
CGAAACGACGAGCGAGTAG
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protein sequence of NO02G04270.1

>NO02G04270.1-protein ID=NO02G04270.1-protein|Name=NO02G04270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MSSLFKTNADSNKTDAMAATTKAPTTIAFESKTSTSTASNRSFGVQKRAQ
ESQPLPEQQQQQSPQAPQPKQGHPQGGEDVSGFVRSLLDEMQGRFEAMHK
QMVSKIDSVGSKVDALDAEITELMREAGVCDVKSEQEQDSWQMGQAGAGY
EPEPMKVGKAPAGMLGHETTSE*
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mRNA from alignment at chr2:1162459..1162977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04270.1 ID=NO02G04270.1|Name=NO02G04270.1|organism=Nannochloropsis oceanica|type=mRNA|length=519bp|location=Sequence derived from alignment at chr2:1162459..1162977+ (Nannochloropsis oceanica)
ATGTCGTCCTTGTTCAAGACCAATGCTGATAGCAACAAGACCGATGCCAT
GGCGGCCACCACAAAAGCTCCTACTACCATTGCATTCGAGTCCAAAACGT
CGACCAGCACGGCCAGCAACCGCAGCTTTGGCGTCCAGAAGCGCGCTCAG
GAATCGCAACCGCTGCCGGAGCAGCAGCAGCAGCAGTCACCGCAAGCACC
GCAGCCGAAGCAGGGTCATCCTCAGGGAGGAGAGGACGTCTCCGGATTTG
TCCGCTCCCTCCTCGACGAGATGCAGGGGCGCTTTGAAGCCATGCACAAA
CAAATGGTCTCCAAGATCGATTCTGTCGGGTCCAAGGTGGATGCGTTGGA
CGCGGAAATCACGGAGCTTATGCGTGAAGCCGGTGTTTGTGATGTGAAAA
GCGAACAGGAGCAGGATAGTTGGCAGATGGGGCAGGCAGGGGCGGGATAT
GAACCTGAGCCCATGAAAGTGGGAAAGGCCCCGGCTGGCATGCTTGGACA
CGAAACGACGAGCGAGTAG
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Coding sequence (CDS) from alignment at chr2:1162459..1162977+

>NO02G04270.1 ID=NO02G04270.1|Name=NO02G04270.1|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at chr2:1162459..1162977+ (Nannochloropsis oceanica)
ATGTCGTCCTTGTTCAAGACCAATGCTGATAGCAACAAGACCGATGCCAT
GGCGGCCACCACAAAAGCTCCTACTACCATTGCATTCGAGTCCAAAACGT
CGACCAGCACGGCCAGCAACCGCAGCTTTGGCGTCCAGAAGCGCGCTCAG
GAATCGCAACCGCTGCCGGAGCAGCAGCAGCAGCAGTCACCGCAAGCACC
GCAGCCGAAGCAGGGTCATCCTCAGGGAGGAGAGGACGTCTCCGGATTTG
TCCGCTCCCTCCTCGACGAGATGCAGGGGCGCTTTGAAGCCATGCACAAA
CAAATGGTCTCCAAGATCGATTCTGTCGGGTCCAAGGTGGATGCGTTGGA
CGCGGAAATCACGGAGCTTATGCGTGAAGCCGGTGTTTGTGATGTGAAAA
GCGAACAGGAGCAGGATAGTTGGCAGATGGGGCAGGCAGGGGCGGGATAT
GAACCTGAGCCCATGAAAGTGGGAAAGGCCCCGGCTGGCATGCTTGGACA
CGAAACGACGAGCGAGTAG
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Synonyms
Publications