NO02G04220, NO02G04220 (gene) Nannochloropsis oceanica

Overview
NameNO02G04220
Unique NameNO02G04220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length859
Alignment locationchr2:1150419..1151277 +

Link to JBrowse

Properties
Property NameValue
DescriptionSoluble nsf attachment protein receptor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1150419..1151277 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO02G04220 vs. NCBI_GenBank
Match: EWM30357.1 (soluble nsf attachment protein receptor [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 5.200e-39
Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 0 
Query:    1 MTDIDYWDGELTSKMTELEQSIGSIKSLFSGDKEACIAKCDSLLKRVREVKKGYNYEMRMSLRNDPRRHDYAEKLKVADERIAVLETELKWAKSEADKKVLFKGGAG 108
            MTDI+YWDGEL+SK+ ELEQ+IG++KS+  GDKEA IAK ++ LKRVREVKKGYNYEMRMSL+NDPRRH+YAEKLK  DERIA LETELKWAK+EA+KK LFKG  G
Sbjct:    1 MTDIEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAKSEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETELKWAKTEANKKSLFKGSKG 107
The following BLAST results are available for this feature:
BLAST of NO02G04220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30357.15.200e-3976.64soluble nsf attachment protein receptor [Nannochlo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007084NSK007084Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04220.1NO02G04220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|517000gene_1012Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g54gene412Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04220.1NO02G04220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04220 ID=NO02G04220|Name=NO02G04220|organism=Nannochloropsis oceanica|type=gene|length=859bp
ATGACAGACATTGATTACTGGGATGGCGAGCTCACAAGCAAAATGACGGA
GCTGGAGCAGTCGATTGGGAGCATTAAGTCCCTCTTTAGCGGGGATAAGG
AAGCGgtacgtgcgagggaggagacgggcgggacggagaggagaatggag
ttgggcatgacctaggtgtactgctctagtactgagtcatagagcaagcg
ggtagtctcatgcagctcacaaatttgcgcgtgggagtggacggagggtg
ttaagtgctgcccatctgctttcaatctcaaggtgggtaggatgtagtgc
tggcgctttctctgcttcccaaaacgggcatgacaagatgccttgggcct
agggctaatgggaattccttacaattgccttctcaatccgaccttaacga
gtcggacttccgcatcttgccgtacatgcgccgatcacagctgccctggc
ccaaataccatctctttagtccccgtccttgctggccacgccttcgctct
gcagcgtgtagtcttagggtccgtaggccaaccacctgcatcataagtgt
actcaaattccgaccaacccctacccgaaacagTGCATCGCCAAGTGCGA
CTCCCTCCTCAAGCGCGTCCGGGAAGTGAAAAAGGGTTACAACTACGAAA
TGCGCATGTCCTTGAGAAATGATCCTCGTCGGCACGACTATGCGGAAAAA
CTCAAGGTAGCCGACGAGCGAATTGCTGTGTTGGAAACCGAGTTAAAATG
GGCGAAGAGCGAAGCGGACAAAAAAGTCTTATTCAAGGGCGGGGCGGGGA
AGGGAGGGGTGGACGGAGGGGGGGGCTTGGGGGGGACCGGACGAATGATT
CGTATTTGA
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protein sequence of NO02G04220.1

>NO02G04220.1-protein ID=NO02G04220.1-protein|Name=NO02G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MTDIDYWDGELTSKMTELEQSIGSIKSLFSGDKEACIAKCDSLLKRVREV
KKGYNYEMRMSLRNDPRRHDYAEKLKVADERIAVLETELKWAKSEADKKV
LFKGGAGKGGVDGGGGLGGTGRMIRI*
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Synonyms
Publications