NO02G04220.1, NO02G04220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04220.1
Unique NameNO02G04220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length381
Alignment locationchr2:1150419..1151277 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1150419..1151277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04220.1 vs.
Match: EWM30357.1 (soluble nsf attachment protein receptor [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 8.900e-39
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 0 
Query:    1 MTDIDYWDGELTSKMTELEQSIGSIKSLFSGDKEACIAKCDSLLKRVREVKKGYNYEMRMSLRNDPRRHDYAEKLKVADERIAVLETELKWAKSEADKKVLFKGGAGKGGVDGGGGL 118
            MTDI+YWDGEL+SK+ ELEQ+IG++KS+  GDKEA IAK ++ LKRVREVKKGYNYEMRMSL+NDPRRH+YAEKLK  DERIA LETELKWAK+EA+KK LFKG     G DG G L
Sbjct:    1 MTDIEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAKSEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETELKWAKTEANKKSLFKGSK---GADGSGTL 114
The following BLAST results are available for this feature:
BLAST of NO02G04220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30357.18.900e-3973.50soluble nsf attachment protein receptor [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04220NO02G04220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04220.1NO02G04220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04220.1.cds1NO02G04220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04220.1.cds2NO02G04220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04220.1 ID=NO02G04220.1|Name=NO02G04220.1|organism=Nannochloropsis oceanica|type=mRNA|length=381bp
ATGACAGACATTGATTACTGGGATGGCGAGCTCACAAGCAAAATGACGGA
GCTGGAGCAGTCGATTGGGAGCATTAAGTCCCTCTTTAGCGGGGATAAGG
AAGCGTGCATCGCCAAGTGCGACTCCCTCCTCAAGCGCGTCCGGGAAGTG
AAAAAGGGTTACAACTACGAAATGCGCATGTCCTTGAGAAATGATCCTCG
TCGGCACGACTATGCGGAAAAACTCAAGGTAGCCGACGAGCGAATTGCTG
TGTTGGAAACCGAGTTAAAATGGGCGAAGAGCGAAGCGGACAAAAAAGTC
TTATTCAAGGGCGGGGCGGGGAAGGGAGGGGTGGACGGAGGGGGGGGCTT
GGGGGGGACCGGACGAATGATTCGTATTTGA
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protein sequence of NO02G04220.1

>NO02G04220.1-protein ID=NO02G04220.1-protein|Name=NO02G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MTDIDYWDGELTSKMTELEQSIGSIKSLFSGDKEACIAKCDSLLKRVREV
KKGYNYEMRMSLRNDPRRHDYAEKLKVADERIAVLETELKWAKSEADKKV
LFKGGAGKGGVDGGGGLGGTGRMIRI*
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mRNA from alignment at chr2:1150419..1151277+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04220.1 ID=NO02G04220.1|Name=NO02G04220.1|organism=Nannochloropsis oceanica|type=mRNA|length=859bp|location=Sequence derived from alignment at chr2:1150419..1151277+ (Nannochloropsis oceanica)
ATGACAGACATTGATTACTGGGATGGCGAGCTCACAAGCAAAATGACGGA
GCTGGAGCAGTCGATTGGGAGCATTAAGTCCCTCTTTAGCGGGGATAAGG
AAGCGGTACGTGCGAGGGAGGAGACGGGCGGGACGGAGAGGAGAATGGAG
TTGGGCATGACCTAGGTGTACTGCTCTAGTACTGAGTCATAGAGCAAGCG
GGTAGTCTCATGCAGCTCACAAATTTGCGCGTGGGAGTGGACGGAGGGTG
TTAAGTGCTGCCCATCTGCTTTCAATCTCAAGGTGGGTAGGATGTAGTGC
TGGCGCTTTCTCTGCTTCCCAAAACGGGCATGACAAGATGCCTTGGGCCT
AGGGCTAATGGGAATTCCTTACAATTGCCTTCTCAATCCGACCTTAACGA
GTCGGACTTCCGCATCTTGCCGTACATGCGCCGATCACAGCTGCCCTGGC
CCAAATACCATCTCTTTAGTCCCCGTCCTTGCTGGCCACGCCTTCGCTCT
GCAGCGTGTAGTCTTAGGGTCCGTAGGCCAACCACCTGCATCATAAGTGT
ACTCAAATTCCGACCAACCCCTACCCGAAACAGTGCATCGCCAAGTGCGA
CTCCCTCCTCAAGCGCGTCCGGGAAGTGAAAAAGGGTTACAACTACGAAA
TGCGCATGTCCTTGAGAAATGATCCTCGTCGGCACGACTATGCGGAAAAA
CTCAAGGTAGCCGACGAGCGAATTGCTGTGTTGGAAACCGAGTTAAAATG
GGCGAAGAGCGAAGCGGACAAAAAAGTCTTATTCAAGGGCGGGGCGGGGA
AGGGAGGGGTGGACGGAGGGGGGGGCTTGGGGGGGACCGGACGAATGATT
CGTATTTGA
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Coding sequence (CDS) from alignment at chr2:1150419..1151277+

>NO02G04220.1 ID=NO02G04220.1|Name=NO02G04220.1|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at chr2:1150419..1151277+ (Nannochloropsis oceanica)
ATGACAGACATTGATTACTGGGATGGCGAGCTCACAAGCAAAATGACGGA
GCTGGAGCAGTCGATTGGGAGCATTAAGTCCCTCTTTAGCGGGGATAAGG
AAGCGTGCATCGCCAAGTGCGACTCCCTCCTCAAGCGCGTCCGGGAAGTG
AAAAAGGGTTACAACTACGAAATGCGCATGTCCTTGAGAAATGATCCTCG
TCGGCACGACTATGCGGAAAAACTCAAGGTAGCCGACGAGCGAATTGCTG
TGTTGGAAACCGAGTTAAAATGGGCGAAGAGCGAAGCGGACAAAAAAGTC
TTATTCAAGGGCGGGGCGGGGAAGGGAGGGGTGGACGGAGGGGGGGGCTT
GGGGGGGACCGGACGAATGATTCGTATTTGA
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Synonyms
Publications