NO02G04100, NO02G04100 (gene) Nannochloropsis oceanica

Overview
NameNO02G04100
Unique NameNO02G04100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1969
Alignment locationchr2:1118964..1120932 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1118964..1120932 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO02G04100 vs. NCBI_GenBank
Match: EWM30293.1 (hypothetical protein Naga_100003g68 [Nannochloropsis gaditana])

HSP 1 Score: 108.2 bits (269), Expect = 1.600e-20
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 0 
Query:    1 MIRTLVRPVQRELQRGKGVVVAKQQQQHKRKMSGLVEKNYFVEEWNGRREITEKTFKFDGKTVPSLIGLALIFPGFIYFVMKDEL 86
            M+R L RP +      +           KR++SGLVEKNYFVEEWNGRREITEKTFKF+ KTVPSLIGLA++FPGFIY+VMKDEL
Sbjct:    1 MLRALARPFRNGFHGNR--------LGKKRQLSGLVEKNYFVEEWNGRREITEKTFKFNSKTVPSLIGLAIVFPGFIYYVMKDEL 77
The following BLAST results are available for this feature:
BLAST of NO02G04100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30293.11.600e-2064.71hypothetical protein Naga_100003g68 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04100.2NO02G04100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G04100.1NO02G04100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100003g68gene400Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04100.2NO02G04100.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G04100.1NO02G04100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04100 ID=NO02G04100|Name=NO02G04100|organism=Nannochloropsis oceanica|type=gene|length=1969bp
TAGATACCGATAGGGTGTGCTGTTTGGGTGTAAGGAGGGAAAATGAGGGT
GAGAACCACACGCAATATGTAGAAGGTATATAAGCGTTCGTAAGCAATGT
TTTGTGCGGGCGGGACAGCCACAGCGCTGCTGGTGCGCTTGCCCACGGCC
GCGACGCGGTGGTTTGGAAGAAGCGACGAGCGTTTTGTTCTCATTCCCTG
ATGATTTCATGGTGCCCACGTGGGCAAGAAGAGCAGACGATGCCTAGCCC
CAGCCGCTGCGCAGAAAGGTTCCGGGTTGGAAAGCGCGGGAACCTCACGC
GGTGTCTGTGGCGTGGTCCCTGTCCTCCAAAGCAGGGGAGGGCCATGGAA
GGCCCAAAGAGTCTTCAACGCACGGAAGCTTCTCAGTCATTGGGAGAAAG
GCGTTCGTTCACATCACAGTAAAGACCGCCTTTCTGCCCTTCCCATGCCT
ACAGCAGCACCATGAACAGTCTCGTATTGTCTCCTTTGTTGCAGTAGCTC
TTTTGAGTGTGGGTTGGTGGAAGGTGTTTGGACTGGAAATAGTTGTGCGG
GGGGCCAACGAGGGCATGCCATAACTGCTCCGAGAATCTCGCGCTCCAAT
TGTGAGGAGAGAAGTCGGGACATCCGAAGCCAAGCCTTTTCTTGCCTTGC
CTGACCAACGTTGACCCTTGCCCCTCATCCCGCAGTAGCGCCTGTAGTTG
TGTAACGACTCCCCCTATCGTGCCTTCTACGGGCAAGGTTTCGCATTGGT
GGCCAGTAGCCACATTCGAAGGGTTCGAATGTGATGAAAGATAGCTCATG
ACGATTCGCAGCTCACTCACTTACTCTTTTATGCTGCCCCACACACCTAC
TCCCTACAAGCGGTACCAATCATGATTCGGACTCTGGTACGACCAGTACA
ACGGGAGTTGCAGCGGGGGAAAGGAGTGGTGGTGGCCAAGgtacgttcgg
aggaggaaagctcgttggggttgatgcgcttgagttttcgtactcgggac
agaacgatgcccgcactcttgctcattacctctcgcaccatgacgacagC
AGCAGCAGCAGCATAAGCGTAAGATGTCGGGGCTGGTGGAGAAAAACTAC
TTCGTCGAGgtacgtgcgatgaaaaggaggagagcacgggttgattaaga
gctgatcttgcagctacgaacccacggcctcggaattggcgcatgtcttt
tggtgacgtgtgtggtaattatataaaagtacttgttatgtacaagtgcg
tgtttgactggtaacattttgggtgtgttgtgataatttgtaaaaaaggg
aagcgctgactccaaacgacgaatacaggcgagcctacttggagctttcc
tcactttgatcttgatcaaacttttcacacatcctttcaccataacctca
attatttatctcatttttcagGAGTGGAACGGACGTCGTGAAATCACGGA
GAAAACCTTCAAGTTTGATGGCAAGACTGTGCCTTCCCTTATTGGCCTCG
CCCTCATCTTTCCTGGCTTTATCTACTTTGTCATGAAGGATGAGCTGGTA
CGTGCTGGCCACCGGGGACGGGACAAAGCGAAAAAAAATTTCAATAGCAG
GGGGAAGAAAGAGAAAGTCTAGAGGGTAGTCGTGGATTGGTTGGTGTAGA
TTCTTAAAAAAAATGTTGTGCTTCGTTCCTTGCTCTTTCTTATTCTTACC
CTTTTCTTTATTTTTCCCCCTTGACACTATGCTCACAGAAAAAGAAGTAT
GAGAAGCTGGGATACAATGTCAAGAAAGGTGGGGACCGAGACATGATGTA
AGAAGGAGAAATAAGTTTTGGCCCCTGTGGGGGTGGGGGTGGTGTGGTTG
GCTTGAGTTTGTAGGTACATATTGACACGAGGTAAAAATAACGGCAGTGG
TTTTGCAGTCAAAGGGAGAAAATAAAAGAAAGAAGGCAATGTCCGTATCT
TACATTAGAAGAACACTGA
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protein sequence of NO02G04100.2

>NO02G04100.2-protein ID=NO02G04100.2-protein|Name=NO02G04100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MIRTLVRPVQRELQRGKGVVVAKQQQQHKRKMSGLVEKNYFVEEWNGRRE
ITEKTFKFDGKTVPSLIGLALIFPGFIYFVMKDELVRAGHRGRDKAKKNF
NSRGKKEKV*
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protein sequence of NO02G04100.1

>NO02G04100.1-protein ID=NO02G04100.1-protein|Name=NO02G04100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MIRTLVRPVQRELQRGKGVVVAKQQQQHKRKMSGLVEKNYFVEEWNGRRE
ITEKTFKFDGKTVPSLIGLALIFPGFIYFVMKDELKKKYEKLGYNVKKGG
DRDMM*
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Synonyms
Publications