NO02G04100.2, NO02G04100.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04100.2
Unique NameNO02G04100.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1548
Alignment locationchr2:1118964..1120932 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1118964..1120932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04100.2 vs.
Match: EWM30293.1 (hypothetical protein Naga_100003g68 [Nannochloropsis gaditana])

HSP 1 Score: 108.6 bits (270), Expect = 1.200e-20
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 0 
Query:    1 MIRTLVRPVQRELQRGKGVVVAKQQQQHKRKMSGLVEKNYFVEEWNGRREITEKTFKFDGKTVPSLIGLALIFPGFIYFVMKDEL 86
            M+R L RP +      +   + K     KR++SGLVEKNYFVEEWNGRREITEKTFKF+ KTVPSLIGLA++FPGFIY+VMKDEL
Sbjct:    1 MLRALARPFRNGFHGNR---LGK-----KRQLSGLVEKNYFVEEWNGRREITEKTFKFNSKTVPSLIGLAIVFPGFIYYVMKDEL 77
The following BLAST results are available for this feature:
BLAST of NO02G04100.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30293.11.200e-2065.88hypothetical protein Naga_100003g68 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04100NO02G04100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04100.2NO02G04100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04100.2.cds1NO02G04100.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04100.2.cds2NO02G04100.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04100.2.cds3NO02G04100.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04100.2 ID=NO02G04100.2|Name=NO02G04100.2|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
TAGATACCGATAGGGTGTGCTGTTTGGGTGTAAGGAGGGAAAATGAGGGT
GAGAACCACACGCAATATGTAGAAGGTATATAAGCGTTCGTAAGCAATGT
TTTGTGCGGGCGGGACAGCCACAGCGCTGCTGGTGCGCTTGCCCACGGCC
GCGACGCGGTGGTTTGGAAGAAGCGACGAGCGTTTTGTTCTCATTCCCTG
ATGATTTCATGGTGCCCACGTGGGCAAGAAGAGCAGACGATGCCTAGCCC
CAGCCGCTGCGCAGAAAGGTTCCGGGTTGGAAAGCGCGGGAACCTCACGC
GGTGTCTGTGGCGTGGTCCCTGTCCTCCAAAGCAGGGGAGGGCCATGGAA
GGCCCAAAGAGTCTTCAACGCACGGAAGCTTCTCAGTCATTGGGAGAAAG
GCGTTCGTTCACATCACAGTAAAGACCGCCTTTCTGCCCTTCCCATGCCT
ACAGCAGCACCATGAACAGTCTCGTATTGTCTCCTTTGTTGCAGTAGCTC
TTTTGAGTGTGGGTTGGTGGAAGGTGTTTGGACTGGAAATAGTTGTGCGG
GGGGCCAACGAGGGCATGCCATAACTGCTCCGAGAATCTCGCGCTCCAAT
TGTGAGGAGAGAAGTCGGGACATCCGAAGCCAAGCCTTTTCTTGCCTTGC
CTGACCAACGTTGACCCTTGCCCCTCATCCCGCAGTAGCGCCTGTAGTTG
TGTAACGACTCCCCCTATCGTGCCTTCTACGGGCAAGGTTTCGCATTGGT
GGCCAGTAGCCACATTCGAAGGGTTCGAATGTGATGAAAGATAGCTCATG
ACGATTCGCAGCTCACTCACTTACTCTTTTATGCTGCCCCACACACCTAC
TCCCTACAAGCGGTACCAATCATGATTCGGACTCTGGTACGACCAGTACA
ACGGGAGTTGCAGCGGGGGAAAGGAGTGGTGGTGGCCAAGCAGCAGCAGC
AGCATAAGCGTAAGATGTCGGGGCTGGTGGAGAAAAACTACTTCGTCGAG
GAGTGGAACGGACGTCGTGAAATCACGGAGAAAACCTTCAAGTTTGATGG
CAAGACTGTGCCTTCCCTTATTGGCCTCGCCCTCATCTTTCCTGGCTTTA
TCTACTTTGTCATGAAGGATGAGCTGGTACGTGCTGGCCACCGGGGACGG
GACAAAGCGAAAAAAAATTTCAATAGCAGGGGGAAGAAAGAGAAAGTCTA
GAGGGTAGTCGTGGATTGGTTGGTGTAGATTCTTAAAAAAAATGTTGTGC
TTCGTTCCTTGCTCTTTCTTATTCTTACCCTTTTCTTTATTTTTCCCCCT
TGACACTATGCTCACAGAAAAAGAAGTATGAGAAGCTGGGATACAATGTC
AAGAAAGGTGGGGACCGAGACATGATGTAAGAAGGAGAAATAAGTTTTGG
CCCCTGTGGGGGTGGGGGTGGTGTGGTTGGCTTGAGTTTGTAGGTACATA
TTGACACGAGGTAAAAATAACGGCAGTGGTTTTGCAGTCAAAGGGAGAAA
ATAAAAGAAAGAAGGCAATGTCCGTATCTTACATTAGAAGAACACTGA
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protein sequence of NO02G04100.2

>NO02G04100.2-protein ID=NO02G04100.2-protein|Name=NO02G04100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MIRTLVRPVQRELQRGKGVVVAKQQQQHKRKMSGLVEKNYFVEEWNGRRE
ITEKTFKFDGKTVPSLIGLALIFPGFIYFVMKDELVRAGHRGRDKAKKNF
NSRGKKEKV*
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mRNA from alignment at chr2:1118964..1120932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04100.2 ID=NO02G04100.2|Name=NO02G04100.2|organism=Nannochloropsis oceanica|type=mRNA|length=1969bp|location=Sequence derived from alignment at chr2:1118964..1120932- (Nannochloropsis oceanica)
TAGATACCGATAGGGTGTGCTGTTTGGGTGTAAGGAGGGAAAATGAGGGT
GAGAACCACACGCAATATGTAGAAGGTATATAAGCGTTCGTAAGCAATGT
TTTGTGCGGGCGGGACAGCCACAGCGCTGCTGGTGCGCTTGCCCACGGCC
GCGACGCGGTGGTTTGGAAGAAGCGACGAGCGTTTTGTTCTCATTCCCTG
ATGATTTCATGGTGCCCACGTGGGCAAGAAGAGCAGACGATGCCTAGCCC
CAGCCGCTGCGCAGAAAGGTTCCGGGTTGGAAAGCGCGGGAACCTCACGC
GGTGTCTGTGGCGTGGTCCCTGTCCTCCAAAGCAGGGGAGGGCCATGGAA
GGCCCAAAGAGTCTTCAACGCACGGAAGCTTCTCAGTCATTGGGAGAAAG
GCGTTCGTTCACATCACAGTAAAGACCGCCTTTCTGCCCTTCCCATGCCT
ACAGCAGCACCATGAACAGTCTCGTATTGTCTCCTTTGTTGCAGTAGCTC
TTTTGAGTGTGGGTTGGTGGAAGGTGTTTGGACTGGAAATAGTTGTGCGG
GGGGCCAACGAGGGCATGCCATAACTGCTCCGAGAATCTCGCGCTCCAAT
TGTGAGGAGAGAAGTCGGGACATCCGAAGCCAAGCCTTTTCTTGCCTTGC
CTGACCAACGTTGACCCTTGCCCCTCATCCCGCAGTAGCGCCTGTAGTTG
TGTAACGACTCCCCCTATCGTGCCTTCTACGGGCAAGGTTTCGCATTGGT
GGCCAGTAGCCACATTCGAAGGGTTCGAATGTGATGAAAGATAGCTCATG
ACGATTCGCAGCTCACTCACTTACTCTTTTATGCTGCCCCACACACCTAC
TCCCTACAAGCGGTACCAATCATGATTCGGACTCTGGTACGACCAGTACA
ACGGGAGTTGCAGCGGGGGAAAGGAGTGGTGGTGGCCAAGGTACGTTCGG
AGGAGGAAAGCTCGTTGGGGTTGATGCGCTTGAGTTTTCGTACTCGGGAC
AGAACGATGCCCGCACTCTTGCTCATTACCTCTCGCACCATGACGACAGC
AGCAGCAGCAGCATAAGCGTAAGATGTCGGGGCTGGTGGAGAAAAACTAC
TTCGTCGAGGTACGTGCGATGAAAAGGAGGAGAGCACGGGTTGATTAAGA
GCTGATCTTGCAGCTACGAACCCACGGCCTCGGAATTGGCGCATGTCTTT
TGGTGACGTGTGTGGTAATTATATAAAAGTACTTGTTATGTACAAGTGCG
TGTTTGACTGGTAACATTTTGGGTGTGTTGTGATAATTTGTAAAAAAGGG
AAGCGCTGACTCCAAACGACGAATACAGGCGAGCCTACTTGGAGCTTTCC
TCACTTTGATCTTGATCAAACTTTTCACACATCCTTTCACCATAACCTCA
ATTATTTATCTCATTTTTCAGGAGTGGAACGGACGTCGTGAAATCACGGA
GAAAACCTTCAAGTTTGATGGCAAGACTGTGCCTTCCCTTATTGGCCTCG
CCCTCATCTTTCCTGGCTTTATCTACTTTGTCATGAAGGATGAGCTGGTA
CGTGCTGGCCACCGGGGACGGGACAAAGCGAAAAAAAATTTCAATAGCAG
GGGGAAGAAAGAGAAAGTCTAGAGGGTAGTCGTGGATTGGTTGGTGTAGA
TTCTTAAAAAAAATGTTGTGCTTCGTTCCTTGCTCTTTCTTATTCTTACC
CTTTTCTTTATTTTTCCCCCTTGACACTATGCTCACAGAAAAAGAAGTAT
GAGAAGCTGGGATACAATGTCAAGAAAGGTGGGGACCGAGACATGATGTA
AGAAGGAGAAATAAGTTTTGGCCCCTGTGGGGGTGGGGGTGGTGTGGTTG
GCTTGAGTTTGTAGGTACATATTGACACGAGGTAAAAATAACGGCAGTGG
TTTTGCAGTCAAAGGGAGAAAATAAAAGAAAGAAGGCAATGTCCGTATCT
TACATTAGAAGAACACTGA
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Coding sequence (CDS) from alignment at chr2:1118964..1120932-

>NO02G04100.2 ID=NO02G04100.2|Name=NO02G04100.2|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at chr2:1118964..1120932- (Nannochloropsis oceanica)
ATGATTCGGACTCTGGTACGACCAGTACAACGGGAGTTGCAGCGGGGGAA
AGGAGTGGTGGTGGCCAAGCAGCAGCAGCAGCATAAGCGTAAGATGTCGG
GGCTGGTGGAGAAAAACTACTTCGTCGAGGAGTGGAACGGACGTCGTGAA
ATCACGGAGAAAACCTTCAAGTTTGATGGCAAGACTGTGCCTTCCCTTAT
TGGCCTCGCCCTCATCTTTCCTGGCTTTATCTACTTTGTCATGAAGGATG
AGCTGGTACGTGCTGGCCACCGGGGACGGGACAAAGCGAAAAAAAATTTC
AATAGCAGGGGGAAGAAAGAGAAAGTCTAG
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Synonyms
Publications