NO02G03930, NO02G03930 (gene) Nannochloropsis oceanica

Overview
NameNO02G03930
Unique NameNO02G03930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2806
Alignment locationchr2:1074564..1077369 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1074564..1077369 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G03930 vs. NCBI_GenBank
Match: EWM30322.1 (hypothetical protein Naga_100003g81 [Nannochloropsis gaditana])

HSP 1 Score: 227.3 bits (578), Expect = 1.100e-55
Identity = 164/437 (37.53%), Postives = 235/437 (53.78%), Query Frame = 0 
Query:   64 AESTATAQTPLRTTCILKSRSYNRF-MSVQDSLDFDKILNEQVPRQLPDSFEKRNLSQSGGSVINQPHRRSDDFIGHCACIFHNVDWSQAESALNESPFLTVRPTTEQLLEAQLREARPIPRGLQQFQALMRWNLGRRAGGADSSFLREQDRAFSDLRAIMSERVRKGTSSNATHGTTARGSALVKNRTNSSNGIMTVASTTLRPGS--VFKKKTSATGAKQR----SCPRPTIPTIENTKS-SPSPSAAKKIGIGSLTTSPGRSQMAQLTTSSLNPHRSDGSVESKAAGGSSSGDLFWKPKQQQSQYSA-----QSLDKVAVARLPTSTIMTTNSKXXXXXXXMVIPTVVVTANDEIHIDGEMLQPGGSIYTRVFGIAYGEKARDPEWRIANGMVDRCYYRGTKKEAKARPGDYFATDHSMLADFMRRRPDVLMDE 488
            A++ + A   L  TC   +R  +R  +S   + DFD +++     +           +S   V    H RSD FIG+ A      +WS  E+AL++SPFLTV P ++ LLE  LR+ARPIPRGL++FQ+++R N GRR  G D SFLREQDRAF DL+A +S R R  +S   T G TA G      +    N    +A + +R  +      +T+ T  K++    S  RPT PT +N +S +P+ + +    +G  +T  G++   +   +       DG V      G S      +  QQ S+Y+      + + + ++ ++  S  ++   K          P V VT   +I ++GE LQPG   Y R+FGIAY EKARDP W I  GMVDRCYYRG KKEAK+RPGDYF TDH+ML DF+ R+P V ++E
Sbjct:   13 ADTLSGAHRQLMLTC---NRGRDRARVSEPCTFDFDSVIDSSARPRKGQEISSCKAPKSEHCVTQTTH-RSDKFIGYRAHCPQLEEWSNVEAALSKSPFLTVYPVSQVLLERHLRDARPIPRGLKRFQSILRANFGRRIDGIDLSFLREQDRAFVDLQAELSGRPR-SSSIPRTSGVTAAGRVASAAKGKPLNTKDDLAHSKMRSPTRENLPSETTTTNMKRKRPLSSFLRPTTPTADNGRSATPTMAVSSASSVGKWSTDEGQTLYKRGKNTDFRDIH-DGDV------GKS-----LQSTQQSSRYNCHVHKKEIVTRASIQQITESNCLSVEEKHTLARNPSHRPKVEVTETGDIRLNGETLQPGEPRYVRMFGIAYCEKARDPAWTIGIGMVDRCYYRGHKKEAKSRPGDYFPTDHAMLVDFIHRQPQVFVEE 432
The following BLAST results are available for this feature:
BLAST of NO02G03930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30322.11.100e-5537.53hypothetical protein Naga_100003g81 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007053NSK007053Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03930.1NO02G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574916gene_987Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g81gene388Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03930.1NO02G03930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03930 ID=NO02G03930|Name=NO02G03930|organism=Nannochloropsis oceanica|type=gene|length=2806bp
TTGTCATTTGAGTTCGGTTACAAAAGTAAGGGGACTCCCATAGATTTAAA
GCGCTCCCCGCACGGGGTGTCTTCTTCCATATGTGTTAAGAAGGCCTCGA
GGTCTGGTGCCTCGTAACGTATGATTGGCCAAGGCTGGGGGCATGGCCAG
TGCCCATAAAACTCTCCCAACCCACCACAATCTGTCGTCACTGGTTTTTG
AAACATGTCTTCCCTCCGTCTTCTCCCATTATGAGAGACGCCCCCCCTCC
CAGCACCCTCCTCACCGCAATTGAATAACCGGGTTGACACAAATGTTACA
GCACATTACGCAAACTTCAATTGCGTAACGCGACGTCTGATCCATAAAAA
GTTAAGTTCATCGGGACCAATGCTTTCCATGGGTCATACCGGCGGTCCCT
CAGAGGGCCCTTACCCTTGTCACGATTTCATCGCGACGCCAATGCAGCTG
CACGCCAGCGCCGAGAATTATAACCTCAGCAAAATTGTCTCTATAGACTC
TGTACCAGCATTTGATACGgtgagttcctggtttggtcataggaccacca
gtaataaaacactttagctaagcgtccgattagtgcatcgctttcaattc
taggctatatgtatacagggcccgacgagggcagtcattgtgcaaaggta
tctgatccccaccacctcctacccacataaatgtcagGTCTCCACGGATG
CGTCCGAGGCCGCGACGCCGCAGGTCGCGGAGTCTACGGCGACTGCGCAG
ACCCCCTTGCGAACAACCTGCATCCTCAAGTCGCGATCTTACAACCGGTT
CATGTCCGTGCAAGACAGTTTGGACTTTGACAAAATTCTAAACGAACAAG
TCCCACGACAATTGCCGGATTCGTTCGAGAAGCGCAACgtaagtctgaca
gcctttggagcactggtacttctaatcggactaactcccatctgcacaac
cctcattttccgcatagTTGTCGCAATCCGGAGGAAGCGTTATCAACCAG
CCCCATCGTCGAgtaagtgtgcattactatctttgggacaagattgtgtc
agtgtttcgtggaatttggacatgtgtaaataagtttttggggttctggc
aattttccaacacaccagcgcgaacttacgcacgttgtcacacactccca
cattaattgaatacagTCTGATGACTTCATCGGTCATTGTGCCTGCATAT
TTCATAACGTAGATTGGTCACAGGCTGAATCAGCACTAAATGAGgtatgt
ttgtgattgtccttgggggtgtcggatggcatactcctggtaccttgagt
tgccaatatataaatctgtacccctgcgcacacacacacagTCCCCCTTC
TTGACCGTTCGGCCGACAACGGAGCAACTGTTGGAAGCACAATTGgtatg
ctatatgagcgtttgatttgatttttgttttgccccctttgtgctcgact
ccttctatttggtaccctgtttcttgctgaaattgcgacatcattaccaa
accacagCGCGAAGCCCGACCCATTCCACGAGGCCTGCAACAATTCCAGG
CCCTGATGCGGTGGAATCTGGGACGACGGGCTGGCGGTGCGGACTCGTCT
TTTTTGAGGGAGCAAGATCGAGCCTTTTCAGACCTGCGAGCCATCATGTC
CGAGCGGGTCCGGAAAGGTACTAGTAGCAATGCGACACACGGCACGACTG
CTAGAGGGTCTGCATTGGTCAAAAATAGGACTAACAGCAGTAATGGGATC
ATGACCGTCGCCTCGACAACACTCAGGCCTGGCTCAGTCTTCAAGAAGAA
GACGTCGGCAACAGGAGCCAAGCAAAGATCCTGTCCGCGGCCCACAATTC
CCACAATCGAAAATACCAAGTCTTCTCCTTCTCCCTCAGCGGCCAAAAAG
ATTGGCATTGGTAGCTTAACCACCAGCCCTGGTCGGAGCCAAATGGCGCA
GTTGACCACCTCAAGCTTGAACCCTCACCGCAGCGACGGAAGCGTGGAGA
GCAAGGCTGCGGGCGGGAGCTCTAGCGGCGATTTGTTTTGGAAGCCGAAG
CAACAGCAGTCTCAGTATTCTGCCCAGTCGCTCGATAAGGTAGCAGTGGC
GCGGCTGCCGACTAGTACCATCATGACCACTAACAGCAAGAAGCGGAGTC
GGAGGGAAATGATGGTGATCCCGACGGTGGTCGTGACAGCAAACGATGAG
ATCCATATTGACGGAGAGATGCTACAACCAGGAGGATCCATTTACACACG
GGTGTTTGGGATAGCGTATGGCGAAAAGGCGCGGGATCCCGAATGGAGGA
TTGCCAATGGGATGGTGGACCGCTGCTACTACCGGGGGACGAAGAAGGAG
GCCAAGGCCCGGCCGGGGGACTATTTTGCGACAGACCACTCGATGCTGGC
CGACTTTATGCGTCGTCGACCTGATGTGCTTATGGATGAGGAGAAGTAGG
GGAAGAGTACAGGAGGGGAGGATTGTGCAGATGGGACAGAGGGCTTACTT
GGGACATGGAGCAGAAAAAGCGTAGTTGGATTTCTTTTTTTCATGGGTCA
CACAAAATACACAAGGTGAAATATATACTCTAGATTCTTGTTGAGATAAC
AACAGGTGAAGAGTGCTTAACTGTGTGTTACGTGTCTGGGTATATATGAT
TCTTTGGGCGGAAAGCGTATACGGAAGACAAAGAGAAAAGCGGTAGCAGG
AAATTGGAACTCTAGGATGTGGACGCATAACACGCCGACATTCTGGGAAA
ATCGCAAAACCCAAATTAACAACTAAGGGAAAAGTGTAACATATGCATGT
CGGAAT
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protein sequence of NO02G03930.1

>NO02G03930.1-protein ID=NO02G03930.1-protein|Name=NO02G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MLSMGHTGGPSEGPYPCHDFIATPMQLHASAENYNLSKIVSIDSVPAFDT
VSTDASEAATPQVAESTATAQTPLRTTCILKSRSYNRFMSVQDSLDFDKI
LNEQVPRQLPDSFEKRNLSQSGGSVINQPHRRSDDFIGHCACIFHNVDWS
QAESALNESPFLTVRPTTEQLLEAQLREARPIPRGLQQFQALMRWNLGRR
AGGADSSFLREQDRAFSDLRAIMSERVRKGTSSNATHGTTARGSALVKNR
TNSSNGIMTVASTTLRPGSVFKKKTSATGAKQRSCPRPTIPTIENTKSSP
SPSAAKKIGIGSLTTSPGRSQMAQLTTSSLNPHRSDGSVESKAAGGSSSG
DLFWKPKQQQSQYSAQSLDKVAVARLPTSTIMTTNSKKRSRREMMVIPTV
VVTANDEIHIDGEMLQPGGSIYTRVFGIAYGEKARDPEWRIANGMVDRCY
YRGTKKEAKARPGDYFATDHSMLADFMRRRPDVLMDEEK*
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Synonyms
Publications