NO02G03930.1, NO02G03930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03930.1
Unique NameNO02G03930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2196
Alignment locationchr2:1074564..1077369 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1074564..1077369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G03930.1 vs.
Match: EWM30322.1 (hypothetical protein Naga_100003g81 [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 3.700e-56
Identity = 163/437 (37.30%), Postives = 234/437 (53.55%), Query Frame = 0 
Query:   64 AESTATAQTPLRTTCILKSRSYNRF-MSVQDSLDFDKILNEQVPRQLPDSFEKRNLSQSGGSVINQPHRRSDDFIGHCACIFHNVDWSQAESALNESPFLTVRPTTEQLLEAQLREARPIPRGLQQFQALMRWNLGRRAGGADSSFLREQDRAFSDLRAIMSERVRKGTSSNATHGTTARGSALVKNRTNSSNGIMTVASTTLRPGSV--FKKKTSATGAKQR----SCPRPTIPTIENTKSS-PSPSAAKKIGIGSLTTSPGRSQMAQLTTSSLNPHRSDGSVESKAAGGSSSGDLFWKPKQQQSQYSA-----QSLDKVAVARLPTSTIMTTNSKKRSRREMMVIPTVVVTANDEIHIDGEMLQPGGSIYTRVFGIAYGEKARDPEWRIANGMVDRCYYRGTKKEAKARPGDYFATDHSMLADFMRRRPDVLMDE 488
            A++ + A   L  TC   +R  +R  +S   + DFD +++     +           +S   V    HR SD FIG+ A      +WS  E+AL++SPFLTV P ++ LLE  LR+ARPIPRGL++FQ+++R N GRR  G D SFLREQDRAF DL+A +S R R  +S   T G TA G      +    N    +A + +R  +      +T+ T  K++    S  RPT PT +N +S+ P+ + +    +G  +T  G++   +   +       DG V               +  QQ S+Y+      + + + ++ ++  S  ++   K    R     P V VT   +I ++GE LQPG   Y R+FGIAY EKARDP W I  GMVDRCYYRG KKEAK+RPGDYF TDH+ML DF+ R+P V ++E
Sbjct:   13 ADTLSGAHRQLMLTC---NRGRDRARVSEPCTFDFDSVIDSSARPRKGQEISSCKAPKSEHCVTQTTHR-SDKFIGYRAHCPQLEEWSNVEAALSKSPFLTVYPVSQVLLERHLRDARPIPRGLKRFQSILRANFGRRIDGIDLSFLREQDRAFVDLQAELSGRPRS-SSIPRTSGVTAAGRVASAAKGKPLNTKDDLAHSKMRSPTRENLPSETTTTNMKRKRPLSSFLRPTTPTADNGRSATPTMAVSSASSVGKWSTDEGQTLYKRGKNTDFRDIH-DGDVGKSL-----------QSTQQSSRYNCHVHKKEIVTRASIQQITESNCLSVEEKHTLARNPSHRPKVEVTETGDIRLNGETLQPGEPRYVRMFGIAYCEKARDPAWTIGIGMVDRCYYRGHKKEAKSRPGDYFPTDHAMLVDFIHRQPQVFVEE 432
The following BLAST results are available for this feature:
BLAST of NO02G03930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30322.13.700e-5637.30hypothetical protein Naga_100003g81 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03930NO02G03930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03930.1NO02G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03930.1.cds1NO02G03930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03930.1.cds2NO02G03930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03930.1.cds3NO02G03930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03930.1.cds4NO02G03930.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03930.1.cds5NO02G03930.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03930.1.cds6NO02G03930.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03930.1 ID=NO02G03930.1|Name=NO02G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp
TTGTCATTTGAGTTCGGTTACAAAAGTAAGGGGACTCCCATAGATTTAAA
GCGCTCCCCGCACGGGGTGTCTTCTTCCATATGTGTTAAGAAGGCCTCGA
GGTCTGGTGCCTCGTAACGTATGATTGGCCAAGGCTGGGGGCATGGCCAG
TGCCCATAAAACTCTCCCAACCCACCACAATCTGTCGTCACTGGTTTTTG
AAACATGTCTTCCCTCCGTCTTCTCCCATTATGAGAGACGCCCCCCCTCC
CAGCACCCTCCTCACCGCAATTGAATAACCGGGTTGACACAAATGTTACA
GCACATTACGCAAACTTCAATTGCGTAACGCGACGTCTGATCCATAAAAA
GTTAAGTTCATCGGGACCAATGCTTTCCATGGGTCATACCGGCGGTCCCT
CAGAGGGCCCTTACCCTTGTCACGATTTCATCGCGACGCCAATGCAGCTG
CACGCCAGCGCCGAGAATTATAACCTCAGCAAAATTGTCTCTATAGACTC
TGTACCAGCATTTGATACGGTCTCCACGGATGCGTCCGAGGCCGCGACGC
CGCAGGTCGCGGAGTCTACGGCGACTGCGCAGACCCCCTTGCGAACAACC
TGCATCCTCAAGTCGCGATCTTACAACCGGTTCATGTCCGTGCAAGACAG
TTTGGACTTTGACAAAATTCTAAACGAACAAGTCCCACGACAATTGCCGG
ATTCGTTCGAGAAGCGCAACTTGTCGCAATCCGGAGGAAGCGTTATCAAC
CAGCCCCATCGTCGATCTGATGACTTCATCGGTCATTGTGCCTGCATATT
TCATAACGTAGATTGGTCACAGGCTGAATCAGCACTAAATGAGTCCCCCT
TCTTGACCGTTCGGCCGACAACGGAGCAACTGTTGGAAGCACAATTGCGC
GAAGCCCGACCCATTCCACGAGGCCTGCAACAATTCCAGGCCCTGATGCG
GTGGAATCTGGGACGACGGGCTGGCGGTGCGGACTCGTCTTTTTTGAGGG
AGCAAGATCGAGCCTTTTCAGACCTGCGAGCCATCATGTCCGAGCGGGTC
CGGAAAGGTACTAGTAGCAATGCGACACACGGCACGACTGCTAGAGGGTC
TGCATTGGTCAAAAATAGGACTAACAGCAGTAATGGGATCATGACCGTCG
CCTCGACAACACTCAGGCCTGGCTCAGTCTTCAAGAAGAAGACGTCGGCA
ACAGGAGCCAAGCAAAGATCCTGTCCGCGGCCCACAATTCCCACAATCGA
AAATACCAAGTCTTCTCCTTCTCCCTCAGCGGCCAAAAAGATTGGCATTG
GTAGCTTAACCACCAGCCCTGGTCGGAGCCAAATGGCGCAGTTGACCACC
TCAAGCTTGAACCCTCACCGCAGCGACGGAAGCGTGGAGAGCAAGGCTGC
GGGCGGGAGCTCTAGCGGCGATTTGTTTTGGAAGCCGAAGCAACAGCAGT
CTCAGTATTCTGCCCAGTCGCTCGATAAGGTAGCAGTGGCGCGGCTGCCG
ACTAGTACCATCATGACCACTAACAGCAAGAAGCGGAGTCGGAGGGAAAT
GATGGTGATCCCGACGGTGGTCGTGACAGCAAACGATGAGATCCATATTG
ACGGAGAGATGCTACAACCAGGAGGATCCATTTACACACGGGTGTTTGGG
ATAGCGTATGGCGAAAAGGCGCGGGATCCCGAATGGAGGATTGCCAATGG
GATGGTGGACCGCTGCTACTACCGGGGGACGAAGAAGGAGGCCAAGGCCC
GGCCGGGGGACTATTTTGCGACAGACCACTCGATGCTGGCCGACTTTATG
CGTCGTCGACCTGATGTGCTTATGGATGAGGAGAAGTAGGGGAAGAGTAC
AGGAGGGGAGGATTGTGCAGATGGGACAGAGGGCTTACTTGGGACATGGA
GCAGAAAAAGCGTAGTTGGATTTCTTTTTTTCATGGGTCACACAAAATAC
ACAAGGTGAAATATATACTCTAGATTCTTGTTGAGATAACAACAGGTGAA
GAGTGCTTAACTGTGTGTTACGTGTCTGGGTATATATGATTCTTTGGGCG
GAAAGCGTATACGGAAGACAAAGAGAAAAGCGGTAGCAGGAAATTGGAAC
TCTAGGATGTGGACGCATAACACGCCGACATTCTGGGAAAATCGCAAAAC
CCAAATTAACAACTAAGGGAAAAGTGTAACATATGCATGTCGGAAT
back to top

protein sequence of NO02G03930.1

>NO02G03930.1-protein ID=NO02G03930.1-protein|Name=NO02G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MLSMGHTGGPSEGPYPCHDFIATPMQLHASAENYNLSKIVSIDSVPAFDT
VSTDASEAATPQVAESTATAQTPLRTTCILKSRSYNRFMSVQDSLDFDKI
LNEQVPRQLPDSFEKRNLSQSGGSVINQPHRRSDDFIGHCACIFHNVDWS
QAESALNESPFLTVRPTTEQLLEAQLREARPIPRGLQQFQALMRWNLGRR
AGGADSSFLREQDRAFSDLRAIMSERVRKGTSSNATHGTTARGSALVKNR
TNSSNGIMTVASTTLRPGSVFKKKTSATGAKQRSCPRPTIPTIENTKSSP
SPSAAKKIGIGSLTTSPGRSQMAQLTTSSLNPHRSDGSVESKAAGGSSSG
DLFWKPKQQQSQYSAQSLDKVAVARLPTSTIMTTNSKKRSRREMMVIPTV
VVTANDEIHIDGEMLQPGGSIYTRVFGIAYGEKARDPEWRIANGMVDRCY
YRGTKKEAKARPGDYFATDHSMLADFMRRRPDVLMDEEK*
back to top

mRNA from alignment at chr2:1074564..1077369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03930.1 ID=NO02G03930.1|Name=NO02G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2806bp|location=Sequence derived from alignment at chr2:1074564..1077369- (Nannochloropsis oceanica)
TTGTCATTTGAGTTCGGTTACAAAAGTAAGGGGACTCCCATAGATTTAAA
GCGCTCCCCGCACGGGGTGTCTTCTTCCATATGTGTTAAGAAGGCCTCGA
GGTCTGGTGCCTCGTAACGTATGATTGGCCAAGGCTGGGGGCATGGCCAG
TGCCCATAAAACTCTCCCAACCCACCACAATCTGTCGTCACTGGTTTTTG
AAACATGTCTTCCCTCCGTCTTCTCCCATTATGAGAGACGCCCCCCCTCC
CAGCACCCTCCTCACCGCAATTGAATAACCGGGTTGACACAAATGTTACA
GCACATTACGCAAACTTCAATTGCGTAACGCGACGTCTGATCCATAAAAA
GTTAAGTTCATCGGGACCAATGCTTTCCATGGGTCATACCGGCGGTCCCT
CAGAGGGCCCTTACCCTTGTCACGATTTCATCGCGACGCCAATGCAGCTG
CACGCCAGCGCCGAGAATTATAACCTCAGCAAAATTGTCTCTATAGACTC
TGTACCAGCATTTGATACGGTGAGTTCCTGGTTTGGTCATAGGACCACCA
GTAATAAAACACTTTAGCTAAGCGTCCGATTAGTGCATCGCTTTCAATTC
TAGGCTATATGTATACAGGGCCCGACGAGGGCAGTCATTGTGCAAAGGTA
TCTGATCCCCACCACCTCCTACCCACATAAATGTCAGGTCTCCACGGATG
CGTCCGAGGCCGCGACGCCGCAGGTCGCGGAGTCTACGGCGACTGCGCAG
ACCCCCTTGCGAACAACCTGCATCCTCAAGTCGCGATCTTACAACCGGTT
CATGTCCGTGCAAGACAGTTTGGACTTTGACAAAATTCTAAACGAACAAG
TCCCACGACAATTGCCGGATTCGTTCGAGAAGCGCAACGTAAGTCTGACA
GCCTTTGGAGCACTGGTACTTCTAATCGGACTAACTCCCATCTGCACAAC
CCTCATTTTCCGCATAGTTGTCGCAATCCGGAGGAAGCGTTATCAACCAG
CCCCATCGTCGAGTAAGTGTGCATTACTATCTTTGGGACAAGATTGTGTC
AGTGTTTCGTGGAATTTGGACATGTGTAAATAAGTTTTTGGGGTTCTGGC
AATTTTCCAACACACCAGCGCGAACTTACGCACGTTGTCACACACTCCCA
CATTAATTGAATACAGTCTGATGACTTCATCGGTCATTGTGCCTGCATAT
TTCATAACGTAGATTGGTCACAGGCTGAATCAGCACTAAATGAGGTATGT
TTGTGATTGTCCTTGGGGGTGTCGGATGGCATACTCCTGGTACCTTGAGT
TGCCAATATATAAATCTGTACCCCTGCGCACACACACACAGTCCCCCTTC
TTGACCGTTCGGCCGACAACGGAGCAACTGTTGGAAGCACAATTGGTATG
CTATATGAGCGTTTGATTTGATTTTTGTTTTGCCCCCTTTGTGCTCGACT
CCTTCTATTTGGTACCCTGTTTCTTGCTGAAATTGCGACATCATTACCAA
ACCACAGCGCGAAGCCCGACCCATTCCACGAGGCCTGCAACAATTCCAGG
CCCTGATGCGGTGGAATCTGGGACGACGGGCTGGCGGTGCGGACTCGTCT
TTTTTGAGGGAGCAAGATCGAGCCTTTTCAGACCTGCGAGCCATCATGTC
CGAGCGGGTCCGGAAAGGTACTAGTAGCAATGCGACACACGGCACGACTG
CTAGAGGGTCTGCATTGGTCAAAAATAGGACTAACAGCAGTAATGGGATC
ATGACCGTCGCCTCGACAACACTCAGGCCTGGCTCAGTCTTCAAGAAGAA
GACGTCGGCAACAGGAGCCAAGCAAAGATCCTGTCCGCGGCCCACAATTC
CCACAATCGAAAATACCAAGTCTTCTCCTTCTCCCTCAGCGGCCAAAAAG
ATTGGCATTGGTAGCTTAACCACCAGCCCTGGTCGGAGCCAAATGGCGCA
GTTGACCACCTCAAGCTTGAACCCTCACCGCAGCGACGGAAGCGTGGAGA
GCAAGGCTGCGGGCGGGAGCTCTAGCGGCGATTTGTTTTGGAAGCCGAAG
CAACAGCAGTCTCAGTATTCTGCCCAGTCGCTCGATAAGGTAGCAGTGGC
GCGGCTGCCGACTAGTACCATCATGACCACTAACAGCAAGAAGCGGAGTC
GGAGGGAAATGATGGTGATCCCGACGGTGGTCGTGACAGCAAACGATGAG
ATCCATATTGACGGAGAGATGCTACAACCAGGAGGATCCATTTACACACG
GGTGTTTGGGATAGCGTATGGCGAAAAGGCGCGGGATCCCGAATGGAGGA
TTGCCAATGGGATGGTGGACCGCTGCTACTACCGGGGGACGAAGAAGGAG
GCCAAGGCCCGGCCGGGGGACTATTTTGCGACAGACCACTCGATGCTGGC
CGACTTTATGCGTCGTCGACCTGATGTGCTTATGGATGAGGAGAAGTAGG
GGAAGAGTACAGGAGGGGAGGATTGTGCAGATGGGACAGAGGGCTTACTT
GGGACATGGAGCAGAAAAAGCGTAGTTGGATTTCTTTTTTTCATGGGTCA
CACAAAATACACAAGGTGAAATATATACTCTAGATTCTTGTTGAGATAAC
AACAGGTGAAGAGTGCTTAACTGTGTGTTACGTGTCTGGGTATATATGAT
TCTTTGGGCGGAAAGCGTATACGGAAGACAAAGAGAAAAGCGGTAGCAGG
AAATTGGAACTCTAGGATGTGGACGCATAACACGCCGACATTCTGGGAAA
ATCGCAAAACCCAAATTAACAACTAAGGGAAAAGTGTAACATATGCATGT
CGGAAT
back to top

Coding sequence (CDS) from alignment at chr2:1074564..1077369-

>NO02G03930.1 ID=NO02G03930.1|Name=NO02G03930.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr2:1074564..1077369- (Nannochloropsis oceanica)
ATGCTTTCCATGGGTCATACCGGCGGTCCCTCAGAGGGCCCTTACCCTTG
TCACGATTTCATCGCGACGCCAATGCAGCTGCACGCCAGCGCCGAGAATT
ATAACCTCAGCAAAATTGTCTCTATAGACTCTGTACCAGCATTTGATACG
GTCTCCACGGATGCGTCCGAGGCCGCGACGCCGCAGGTCGCGGAGTCTAC
GGCGACTGCGCAGACCCCCTTGCGAACAACCTGCATCCTCAAGTCGCGAT
CTTACAACCGGTTCATGTCCGTGCAAGACAGTTTGGACTTTGACAAAATT
CTAAACGAACAAGTCCCACGACAATTGCCGGATTCGTTCGAGAAGCGCAA
CTTGTCGCAATCCGGAGGAAGCGTTATCAACCAGCCCCATCGTCGATCTG
ATGACTTCATCGGTCATTGTGCCTGCATATTTCATAACGTAGATTGGTCA
CAGGCTGAATCAGCACTAAATGAGTCCCCCTTCTTGACCGTTCGGCCGAC
AACGGAGCAACTGTTGGAAGCACAATTGCGCGAAGCCCGACCCATTCCAC
GAGGCCTGCAACAATTCCAGGCCCTGATGCGGTGGAATCTGGGACGACGG
GCTGGCGGTGCGGACTCGTCTTTTTTGAGGGAGCAAGATCGAGCCTTTTC
AGACCTGCGAGCCATCATGTCCGAGCGGGTCCGGAAAGGTACTAGTAGCA
ATGCGACACACGGCACGACTGCTAGAGGGTCTGCATTGGTCAAAAATAGG
ACTAACAGCAGTAATGGGATCATGACCGTCGCCTCGACAACACTCAGGCC
TGGCTCAGTCTTCAAGAAGAAGACGTCGGCAACAGGAGCCAAGCAAAGAT
CCTGTCCGCGGCCCACAATTCCCACAATCGAAAATACCAAGTCTTCTCCT
TCTCCCTCAGCGGCCAAAAAGATTGGCATTGGTAGCTTAACCACCAGCCC
TGGTCGGAGCCAAATGGCGCAGTTGACCACCTCAAGCTTGAACCCTCACC
GCAGCGACGGAAGCGTGGAGAGCAAGGCTGCGGGCGGGAGCTCTAGCGGC
GATTTGTTTTGGAAGCCGAAGCAACAGCAGTCTCAGTATTCTGCCCAGTC
GCTCGATAAGGTAGCAGTGGCGCGGCTGCCGACTAGTACCATCATGACCA
CTAACAGCAAGAAGCGGAGTCGGAGGGAAATGATGGTGATCCCGACGGTG
GTCGTGACAGCAAACGATGAGATCCATATTGACGGAGAGATGCTACAACC
AGGAGGATCCATTTACACACGGGTGTTTGGGATAGCGTATGGCGAAAAGG
CGCGGGATCCCGAATGGAGGATTGCCAATGGGATGGTGGACCGCTGCTAC
TACCGGGGGACGAAGAAGGAGGCCAAGGCCCGGCCGGGGGACTATTTTGC
GACAGACCACTCGATGCTGGCCGACTTTATGCGTCGTCGACCTGATGTGC
TTATGGATGAGGAGAAGTAG
back to top
Synonyms
Publications