NO02G03810, NO02G03810 (gene) Nannochloropsis oceanica

Overview
NameNO02G03810
Unique NameNO02G03810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2250
Alignment locationchr2:1034643..1036892 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1034643..1036892 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G03810 vs. NCBI_GenBank
Match: EWM30324.1 (hypothetical protein Naga_100003g95 [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 1.100e-75
Identity = 393/893 (44.01%), Postives = 465/893 (52.07%), Query Frame = 0 
Query:    1 MALNTCNRGSSLNTIVRSVNNFLARALPRLPRYEGLSEGGARSLALENLRDLVRRNEGDLTTEVARGTNQSLRTFWRHFLSFLRDSAGEGELENYVVAGEQIE-----------GRGG------GKVEGGVTGLGRSNG-AEVEAVGLRATHEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGEDMFGQKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPVLIEENDEAMPASRSQVLQQQRQSMLPAPVPRIPLHIAMSAQXXXXXXXXXXXXXXXSMRRQPGTVMDLEAREGFLEWMKSNTKMQPVSMTTAMRTANRVLSSMLTLHPRPDASSDQAELSLPEIREFVDQHHKDFLVEVGRTANVSVKTFWRHFIRFLSGDDAVRDFNQGLSTTLQQQQHQXKLXXXXXXXS--------------------------------LRAQHKVVQSIQQRPEQQHLFQVSSTPSSALGPM-------AGTT---------------------------------------------------------------------------------------VPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADNAAEGLGGGGDVDNGQQLSVISQDLLDRFEAYLG--NYFPQPQIWATLRDVVSLTPNIMKEAGEHIFLQDPHAVTSFFDRHYAHPLVVANVQQIKHFYDFCRA 748
            MALNTCNRGSSLNTIVRSVNNFLAR+LPRLPRYE +SEGG+RSL +E+LR L+ R+E +LT EVARGTNQSLRTFWRHF++FLRDS+GEG++E +V  GEQ++           G G        + +GG+ G    +G AE +++G+  T +A                                                               G   F  +                                                          +  L +  D  +P + S  +QQ+      A      +++   A                +MRRQ G VMD  AREGF EWMK+NTKMQPVSMTTAMRTANRVL SML LHP+P+ S D+AE+SL +IR FVD+H++DFL EVGRTANVSVKTFWRHFIRFLSGD+AVR+FN  LS +LQ     X L       +                                L + H +  +        H   + S PSSA  P+       +G T                                                                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               +D  A+     G   +GQQ +VI Q L+DRFEAY+G   +F QPQIW  +RDVV++   IM+ AGEH+FL+ P AVT FFDRH+AHPLVVANVQ +KHFY+FCR+
Sbjct:  881 MALNTCNRGSSLNTIVRSVNNFLARSLPRLPRYENMSEGGSRSLDIESLRGLLERSEAELTAEVARGTNQSLRTFWRHFMNFLRDSSGEGDMEYFVTTGEQLDADVVPVGVGVPGSGAYRRVADSEKDGGLRGSPDGSGTAEEDSLGM--TSDA-----------------------------------------------GKYFRVPKKGVNGLNGGGGTFDAEDKRMRRKKRGFSDPEGSTHDTESRSLIPEKRRLSSVPCRVRGGSNGDGMKGEGVNDRLADSLKQNEDLDVPFTASAQVQQRSLPSSRAITGFTGINLPNMAS-------------ASTMRRQQGMVMDRNAREGFTEWMKTNTKMQPVSMTTAMRTANRVLFSMLLLHPQPNTSLDRAEMSLEQIRVFVDEHYQDFLAEVGRTANVSVKTFWRHFIRFLSGDNAVREFNNDLSMSLQXXXXXXNLELYEQQQAXXXXXXXXXXXXXXXXXXXXXXXHEHGRGAVELASSHSISLNATSASATDHPSSL-SLPSSASAPLLAGVEGKSGRTGEVFAFHGVDPILAASTPAHVTSRSSSVSAHQSYKPLSSSDARRGSVGNAEIAFAFEPQPQNPNVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNAQDVPFHYHALIQSDGVAQMTSARG-ACSGQQ-TVIDQLLVDRFEAYMGELGFFNQPQIWTVVRDVVTVIRGIMEPAGEHMFLRSPQAVTEFFDRHFAHPLVVANVQNLKHFYEFCRS 1708
The following BLAST results are available for this feature:
BLAST of NO02G03810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30324.11.100e-7544.01hypothetical protein Naga_100003g95 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03810.1NO02G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574836gene_973Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g95gene376Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03810.1NO02G03810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03810 ID=NO02G03810|Name=NO02G03810|organism=Nannochloropsis oceanica|type=gene|length=2250bp
ATGGCTTTGAATACTTGTAATCGTGGGTCGAGCCTGAATACGATCGTGCG
GAGCGTGAACAATTTCCTTGCGCGGGCATTGCCTAGGCTGCCGAGGTATG
AAGGGCTGTCGGAGGGAGGGGCGAGGAGCCTGGCGCTGGAGAATCTTCGG
GATTTGGTGCGACGGAACGAGGGGGACTTGACGACGGAGGTGGCGCGGGG
CACAAACCAGAGTTTGCGGACTTTCTGGCGACACTTTTTGAGTTTTTTGC
GTGACTCGGCAGGAGAGGGGGAGTTGGAGAATTACGTGGTGGCTGGGGAG
CAGATCGAGGGTAGGGGAGGAGGAAAAGTGGAGGGAGGGGTAACGGGCTT
GGGGAGGAGTAATGGGGCTGAAGTGGAGGCGGTTGGTTTGAGGGCGACGC
ATGAAGCATCAGCAGCTGCAGCAGGAGCAGCAACCGAGGCGGAGGCGACG
ACAGTGGCTGTTGTGGGAAGTGGAGATGGAGAAGGGGGAGAAAAAGGAGT
GCAGGAAGGGGATAGTGGAGGTAATAGCGAGGTCGAGGGGAGGCGCCGCA
GAAAGAAAAAGGCATTTACAGGGTTGGCGTTGGCCATGCTGGAAGAGGGA
GAGGACATGTTCGGGCAGAAGCCGCGACCTTACACCGCGCCGGCTGATAT
GGATGGTGGTAGAGGAAGAGGAGGAGGAAGAAGACGAGAAGGAGGTGGAA
AGGAAGGGCTTGCATTGGACCCCGACGGTGTTTCACTGGACGGTGCAGGG
GATTGGGAAGGCGAAGGCGGCGGTGATGGAGTTGGCGAAAGGGAATCTCC
TGTCCTTATCGAGGAAAATGACGAGGCCATGCCTGCCTCTCGCTCCCAAG
TGTTGCAGCAGCAAAGGCAGTCTATGTTACCGGCGCCAGTACCCCGGATT
CCGCTTCACATTGCAATGAGCGCGCAGCAGCATTTGCAGCAGCAGCAGCA
GCAGCATATGGACTCCCAGTCATCGATGCGTCGGCAGCCGGGGACCGTTA
TGGATTTGGAGGCGCGGGAAGGGTTCCTGGAATGGATGAAAAGCAATACC
AAGATGCAGCCTGTTTCGATGACCACAGCCATGCGAACAGCAAACCGCGT
GTTGTCATCGATGCTGACCTTACACCCACGACCAGATGCATCCTCAGATC
AGGCCGAATTGTCCTTGCCGGAGATTCGGGAATTTGTCGACCAGCACCAT
AAGGATTTTTTGGTCGAGGTGGGAAGGACAGCGAATGTGAGCGTCAAGAC
ATTTTGGCGGCATTTTATTCGCTTTTTGTCGGGGGATGATGCGGTGCGAG
ATTTCAATCAGGGCCTCTCCACGACATTACAGCAGCAGCAACACCAGCAT
AAGCTTACCCTTCACCAGCAGCAGCAAAGCTTACGAGCTCAGCACAAGGT
GGTCCAAAGCATCCAGCAGCGACCAGAGCAACAGCACTTATTCCAGGTCT
CCAGCACCCCTTCTTCCGCCCTGGGCCCCATGGCGGGCACTACGGTCCCT
GATCAAACAGTAGCGAGTAGTAATGGTGGTGGAGGAGAGGAGTCCTTTTA
CACCGCTGGCGCCAACGAGGCAGTCTTCGCCCTCCAGCAGCAACGACAAC
AGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAA
CAACAACAGCAACTGCAGGCAGCGCAGCAACACTACGCAGCCTATTACTA
CATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAAC
AACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTG
CAACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTAT
GATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGC
AGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAA
GGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGAT
TTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCC
CCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCC
AATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGC
TGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAA
ATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA
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protein sequence of NO02G03810.1

>NO02G03810.1-protein ID=NO02G03810.1-protein|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp
MALNTCNRGSSLNTIVRSVNNFLARALPRLPRYEGLSEGGARSLALENLR
DLVRRNEGDLTTEVARGTNQSLRTFWRHFLSFLRDSAGEGELENYVVAGE
QIEGRGGGKVEGGVTGLGRSNGAEVEAVGLRATHEASAAAAGAATEAEAT
TVAVVGSGDGEGGEKGVQEGDSGGNSEVEGRRRRKKKAFTGLALAMLEEG
EDMFGQKPRPYTAPADMDGGRGRGGGRRREGGGKEGLALDPDGVSLDGAG
DWEGEGGGDGVGERESPVLIEENDEAMPASRSQVLQQQRQSMLPAPVPRI
PLHIAMSAQQHLQQQQQQHMDSQSSMRRQPGTVMDLEAREGFLEWMKSNT
KMQPVSMTTAMRTANRVLSSMLTLHPRPDASSDQAELSLPEIREFVDQHH
KDFLVEVGRTANVSVKTFWRHFIRFLSGDDAVRDFNQGLSTTLQQQQHQH
KLTLHQQQQSLRAQHKVVQSIQQRPEQQHLFQVSSTPSSALGPMAGTTVP
DQTVASSNGGGGEESFYTAGANEAVFALQQQRQQQQQQQQQQQQQQQQQQ
QQQQLQAAQQHYAAYYYMQQQQQQALQQQQQQQQQQQQRHHQEQQQQQQL
QQQQQQQQQQHQQQQAMMQAQLLMLQAQQQQQMQEEQRHQSIIHADNAAE
GLGGGGDVDNGQQLSVISQDLLDRFEAYLGNYFPQPQIWATLRDVVSLTP
NIMKEAGEHIFLQDPHAVTSFFDRHYAHPLVVANVQQIKHFYDFCRASS*
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Synonyms
Publications