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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1034643..1036892 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03810.1 vs.
Match: EWM30324.1 (hypothetical protein Naga_100003g95 [Nannochloropsis gaditana]) HSP 1 Score: 226.5 bits (576), Expect = 2.800e-55 Identity = 276/714 (38.66%), Postives = 364/714 (50.98%), Query Frame = 0
Query: 1 MALNTCNRGSSLNTIVRSVNNFLARALPRLPRYEGLSEGGARSLALENLRDLVRRNEGDLTTEVARGTNQSLRTFWRHFLSFLRDSAGEGELENYVVAGEQIEGRGGGKVEGGVTGLG--RSNGAEVEAVGLRATHEASAAAAGAATEAEATTVAVVGS--GDGEGGEKGVQEGDSGGNSEVEGRR-RRKKKAFTGLALAMLE-EGEDMFGQKPRPYTAPADMDGGRGRGGGRRREGGGKEGLALDPDGVSLDGAGDWEGEGGGDGVGERESPVLIEEND-------EAMPASRSQVLQQQRQSMLPAPVPRIPLHIAMSAQQHLQQQQQQHMDSQSSMRRQPGTVMDLEAREGFLEWMKSNTKMQPVSMTTAMRTANRVLSSMLTLHPRPDASSDQAELSLPEIREFVDQHHKDFLVEVGRTANVSVKTFWRHFIRFLSGDDAVRDFNQGLSTTLQQQQHQHKLTLHQQQQSL-RAQHKVVQSIQQRPEQQ-----------------HLFQVSSTPSSALGPMAGTTVPDQT-------VASSNGGGGEE-SFYTAGANEAVFALQQQRQQQQQQQQQQQQQQQQQQQQQQLQAAQQHYAAYYYMQQQQQQALQQQQQ-------------QQQQQQQRHHQEQQ-------QQQQLQQQQQQQQQQHQQQQAMMQ---------------AQLLMLQAQQQQQMQEEQRHQ 641
MALNTCNRGSSLNTIVRSVNNFLAR+LPRLPRYE +SEGG+RSL +E+LR L+ R+E +LT EVARGTNQSLRTFWRHF++FLRDS+GEG++E +V GEQ++ V GV G G R + GLR + + S G A E + G + G G+ G GG + E +R RRKK+ F+ + + E + +K R + P R GG G DG+ G+GV +R + L + D A RS + +P M++ +++QQ MD AREGF EWMK+NTKMQPVSMTTAMRTANRVL SML LHP+P+ S D+AE+SL +IR FVD+H++DFL EVGRTANVSVKTFWRHFIRFLSGD+AVR+FN LS +LQQQQHQH L L++QQQ+L +AQ V+ + ++ +Q H +++T +SA + ++P V +G GE +F+ A + Q + ++ A + Q Q ++QQQ+ Q+QQQ + HQ Q QQQQ Q+ QQ QQ + QQ Q A + Q QQQQ QE Q+ Q
Sbjct: 881 MALNTCNRGSSLNTIVRSVNNFLARSLPRLPRYENMSEGGSRSLDIESLRGLLERSEAELTAEVARGTNQSLRTFWRHFMNFLRDSSGEGDMEYFVTTGEQLDA-DVVPVGVGVPGSGAYRRVADSEKDGGLRGSPDGS----GTAEEDSLGMTSDAGKYFRVPKKGVNGLNGG--GGTFDAEDKRMRRKKRGFSDPEGSTHDTESRSLIPEKRRLSSVPC-------------RVRGGSNG-----DGMK------------GEGVNDRLADSLKQNEDLDVPFTASAQVQQRSLPSSRAITGFTGINLPN------MASASTMRRQQGMVMDR--------------NAREGFTEWMKTNTKMQPVSMTTAMRTANRVLFSMLLLHPQPNTSLDRAEMSLEQIRVFVDEHYQDFLAEVGRTANVSVKTFWRHFIRFLSGDNAVREFNNDLSMSLQQQQHQHNLELYEQQQALQQAQQHVLDQVHKQQHKQEKKLHEHGRGAVELASSHSISLNATSASATDHPSSLSLPSSASAPLLAGVEGKSGRTGEVFAFHGVDPILAASTPAHVTSRSSSVSAHQSYKPLSSSDARRGSVGNAEIAFAFEPQPQNPNVIKQQQESSSSSSSPPPLQKSQEQQQPQLHQSSQTLLLHHPQQQQQPQELQQYHQQLRYQQQQQQQHWAAHLHPSPQQYAAYFYLQQQHQQQQQQEHQKEQ 1537
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03810.1 ID=NO02G03810.1|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp ATGGCTTTGAATACTTGTAATCGTGGGTCGAGCCTGAATACGATCGTGCG GAGCGTGAACAATTTCCTTGCGCGGGCATTGCCTAGGCTGCCGAGGTATG AAGGGCTGTCGGAGGGAGGGGCGAGGAGCCTGGCGCTGGAGAATCTTCGG GATTTGGTGCGACGGAACGAGGGGGACTTGACGACGGAGGTGGCGCGGGG CACAAACCAGAGTTTGCGGACTTTCTGGCGACACTTTTTGAGTTTTTTGC GTGACTCGGCAGGAGAGGGGGAGTTGGAGAATTACGTGGTGGCTGGGGAG CAGATCGAGGGTAGGGGAGGAGGAAAAGTGGAGGGAGGGGTAACGGGCTT GGGGAGGAGTAATGGGGCTGAAGTGGAGGCGGTTGGTTTGAGGGCGACGC ATGAAGCATCAGCAGCTGCAGCAGGAGCAGCAACCGAGGCGGAGGCGACG ACAGTGGCTGTTGTGGGAAGTGGAGATGGAGAAGGGGGAGAAAAAGGAGT GCAGGAAGGGGATAGTGGAGGTAATAGCGAGGTCGAGGGGAGGCGCCGCA GAAAGAAAAAGGCATTTACAGGGTTGGCGTTGGCCATGCTGGAAGAGGGA GAGGACATGTTCGGGCAGAAGCCGCGACCTTACACCGCGCCGGCTGATAT GGATGGTGGTAGAGGAAGAGGAGGAGGAAGAAGACGAGAAGGAGGTGGAA AGGAAGGGCTTGCATTGGACCCCGACGGTGTTTCACTGGACGGTGCAGGG GATTGGGAAGGCGAAGGCGGCGGTGATGGAGTTGGCGAAAGGGAATCTCC TGTCCTTATCGAGGAAAATGACGAGGCCATGCCTGCCTCTCGCTCCCAAG TGTTGCAGCAGCAAAGGCAGTCTATGTTACCGGCGCCAGTACCCCGGATT CCGCTTCACATTGCAATGAGCGCGCAGCAGCATTTGCAGCAGCAGCAGCA GCAGCATATGGACTCCCAGTCATCGATGCGTCGGCAGCCGGGGACCGTTA TGGATTTGGAGGCGCGGGAAGGGTTCCTGGAATGGATGAAAAGCAATACC AAGATGCAGCCTGTTTCGATGACCACAGCCATGCGAACAGCAAACCGCGT GTTGTCATCGATGCTGACCTTACACCCACGACCAGATGCATCCTCAGATC AGGCCGAATTGTCCTTGCCGGAGATTCGGGAATTTGTCGACCAGCACCAT AAGGATTTTTTGGTCGAGGTGGGAAGGACAGCGAATGTGAGCGTCAAGAC ATTTTGGCGGCATTTTATTCGCTTTTTGTCGGGGGATGATGCGGTGCGAG ATTTCAATCAGGGCCTCTCCACGACATTACAGCAGCAGCAACACCAGCAT AAGCTTACCCTTCACCAGCAGCAGCAAAGCTTACGAGCTCAGCACAAGGT GGTCCAAAGCATCCAGCAGCGACCAGAGCAACAGCACTTATTCCAGGTCT CCAGCACCCCTTCTTCCGCCCTGGGCCCCATGGCGGGCACTACGGTCCCT GATCAAACAGTAGCGAGTAGTAATGGTGGTGGAGGAGAGGAGTCCTTTTA CACCGCTGGCGCCAACGAGGCAGTCTTCGCCCTCCAGCAGCAACGACAAC AGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAA CAACAACAGCAACTGCAGGCAGCGCAGCAACACTACGCAGCCTATTACTA CATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAAC AACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTG CAACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTAT GATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGC AGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAA GGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGAT TTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCC CCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCC AATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGC TGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAA ATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA back to topprotein sequence of NO02G03810.1 >NO02G03810.1-protein ID=NO02G03810.1-protein|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp MALNTCNRGSSLNTIVRSVNNFLARALPRLPRYEGLSEGGARSLALENLR DLVRRNEGDLTTEVARGTNQSLRTFWRHFLSFLRDSAGEGELENYVVAGE QIEGRGGGKVEGGVTGLGRSNGAEVEAVGLRATHEASAAAAGAATEAEAT TVAVVGSGDGEGGEKGVQEGDSGGNSEVEGRRRRKKKAFTGLALAMLEEG EDMFGQKPRPYTAPADMDGGRGRGGGRRREGGGKEGLALDPDGVSLDGAG DWEGEGGGDGVGERESPVLIEENDEAMPASRSQVLQQQRQSMLPAPVPRI PLHIAMSAQQHLQQQQQQHMDSQSSMRRQPGTVMDLEAREGFLEWMKSNT KMQPVSMTTAMRTANRVLSSMLTLHPRPDASSDQAELSLPEIREFVDQHH KDFLVEVGRTANVSVKTFWRHFIRFLSGDDAVRDFNQGLSTTLQQQQHQH KLTLHQQQQSLRAQHKVVQSIQQRPEQQHLFQVSSTPSSALGPMAGTTVP DQTVASSNGGGGEESFYTAGANEAVFALQQQRQQQQQQQQQQQQQQQQQQ QQQQLQAAQQHYAAYYYMQQQQQQALQQQQQQQQQQQQRHHQEQQQQQQL QQQQQQQQQQHQQQQAMMQAQLLMLQAQQQQQMQEEQRHQSIIHADNAAE GLGGGGDVDNGQQLSVISQDLLDRFEAYLGNYFPQPQIWATLRDVVSLTP NIMKEAGEHIFLQDPHAVTSFFDRHYAHPLVVANVQQIKHFYDFCRASS* back to topmRNA from alignment at chr2:1034643..1036892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03810.1 ID=NO02G03810.1|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at chr2:1034643..1036892- (Nannochloropsis oceanica) ATGGCTTTGAATACTTGTAATCGTGGGTCGAGCCTGAATACGATCGTGCG
GAGCGTGAACAATTTCCTTGCGCGGGCATTGCCTAGGCTGCCGAGGTATG
AAGGGCTGTCGGAGGGAGGGGCGAGGAGCCTGGCGCTGGAGAATCTTCGG
GATTTGGTGCGACGGAACGAGGGGGACTTGACGACGGAGGTGGCGCGGGG
CACAAACCAGAGTTTGCGGACTTTCTGGCGACACTTTTTGAGTTTTTTGC
GTGACTCGGCAGGAGAGGGGGAGTTGGAGAATTACGTGGTGGCTGGGGAG
CAGATCGAGGGTAGGGGAGGAGGAAAAGTGGAGGGAGGGGTAACGGGCTT
GGGGAGGAGTAATGGGGCTGAAGTGGAGGCGGTTGGTTTGAGGGCGACGC
ATGAAGCATCAGCAGCTGCAGCAGGAGCAGCAACCGAGGCGGAGGCGACG
ACAGTGGCTGTTGTGGGAAGTGGAGATGGAGAAGGGGGAGAAAAAGGAGT
GCAGGAAGGGGATAGTGGAGGTAATAGCGAGGTCGAGGGGAGGCGCCGCA
GAAAGAAAAAGGCATTTACAGGGTTGGCGTTGGCCATGCTGGAAGAGGGA
GAGGACATGTTCGGGCAGAAGCCGCGACCTTACACCGCGCCGGCTGATAT
GGATGGTGGTAGAGGAAGAGGAGGAGGAAGAAGACGAGAAGGAGGTGGAA
AGGAAGGGCTTGCATTGGACCCCGACGGTGTTTCACTGGACGGTGCAGGG
GATTGGGAAGGCGAAGGCGGCGGTGATGGAGTTGGCGAAAGGGAATCTCC
TGTCCTTATCGAGGAAAATGACGAGGCCATGCCTGCCTCTCGCTCCCAAG
TGTTGCAGCAGCAAAGGCAGTCTATGTTACCGGCGCCAGTACCCCGGATT
CCGCTTCACATTGCAATGAGCGCGCAGCAGCATTTGCAGCAGCAGCAGCA
GCAGCATATGGACTCCCAGTCATCGATGCGTCGGCAGCCGGGGACCGTTA
TGGATTTGGAGGCGCGGGAAGGGTTCCTGGAATGGATGAAAAGCAATACC
AAGATGCAGCCTGTTTCGATGACCACAGCCATGCGAACAGCAAACCGCGT
GTTGTCATCGATGCTGACCTTACACCCACGACCAGATGCATCCTCAGATC
AGGCCGAATTGTCCTTGCCGGAGATTCGGGAATTTGTCGACCAGCACCAT
AAGGATTTTTTGGTCGAGGTGGGAAGGACAGCGAATGTGAGCGTCAAGAC
ATTTTGGCGGCATTTTATTCGCTTTTTGTCGGGGGATGATGCGGTGCGAG
ATTTCAATCAGGGCCTCTCCACGACATTACAGCAGCAGCAACACCAGCAT
AAGCTTACCCTTCACCAGCAGCAGCAAAGCTTACGAGCTCAGCACAAGGT
GGTCCAAAGCATCCAGCAGCGACCAGAGCAACAGCACTTATTCCAGGTCT
CCAGCACCCCTTCTTCCGCCCTGGGCCCCATGGCGGGCACTACGGTCCCT
GATCAAACAGTAGCGAGTAGTAATGGTGGTGGAGGAGAGGAGTCCTTTTA
CACCGCTGGCGCCAACGAGGCAGTCTTCGCCCTCCAGCAGCAACGACAAC
AGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAA
CAACAACAGCAACTGCAGGCAGCGCAGCAACACTACGCAGCCTATTACTA
CATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAAC
AACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTG
CAACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTAT
GATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGC
AGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAA
GGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGAT
TTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCC
CCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCC
AATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGC
TGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAA
ATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA
back to topCoding sequence (CDS) from alignment at chr2:1034643..1036892- >NO02G03810.1 ID=NO02G03810.1|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at chr2:1034643..1036892- (Nannochloropsis oceanica) ATGGCTTTGAATACTTGTAATCGTGGGTCGAGCCTGAATACGATCGTGCG GAGCGTGAACAATTTCCTTGCGCGGGCATTGCCTAGGCTGCCGAGGTATG AAGGGCTGTCGGAGGGAGGGGCGAGGAGCCTGGCGCTGGAGAATCTTCGG GATTTGGTGCGACGGAACGAGGGGGACTTGACGACGGAGGTGGCGCGGGG CACAAACCAGAGTTTGCGGACTTTCTGGCGACACTTTTTGAGTTTTTTGC GTGACTCGGCAGGAGAGGGGGAGTTGGAGAATTACGTGGTGGCTGGGGAG CAGATCGAGGGTAGGGGAGGAGGAAAAGTGGAGGGAGGGGTAACGGGCTT GGGGAGGAGTAATGGGGCTGAAGTGGAGGCGGTTGGTTTGAGGGCGACGC ATGAAGCATCAGCAGCTGCAGCAGGAGCAGCAACCGAGGCGGAGGCGACG ACAGTGGCTGTTGTGGGAAGTGGAGATGGAGAAGGGGGAGAAAAAGGAGT GCAGGAAGGGGATAGTGGAGGTAATAGCGAGGTCGAGGGGAGGCGCCGCA GAAAGAAAAAGGCATTTACAGGGTTGGCGTTGGCCATGCTGGAAGAGGGA GAGGACATGTTCGGGCAGAAGCCGCGACCTTACACCGCGCCGGCTGATAT GGATGGTGGTAGAGGAAGAGGAGGAGGAAGAAGACGAGAAGGAGGTGGAA AGGAAGGGCTTGCATTGGACCCCGACGGTGTTTCACTGGACGGTGCAGGG GATTGGGAAGGCGAAGGCGGCGGTGATGGAGTTGGCGAAAGGGAATCTCC TGTCCTTATCGAGGAAAATGACGAGGCCATGCCTGCCTCTCGCTCCCAAG TGTTGCAGCAGCAAAGGCAGTCTATGTTACCGGCGCCAGTACCCCGGATT CCGCTTCACATTGCAATGAGCGCGCAGCAGCATTTGCAGCAGCAGCAGCA GCAGCATATGGACTCCCAGTCATCGATGCGTCGGCAGCCGGGGACCGTTA TGGATTTGGAGGCGCGGGAAGGGTTCCTGGAATGGATGAAAAGCAATACC AAGATGCAGCCTGTTTCGATGACCACAGCCATGCGAACAGCAAACCGCGT GTTGTCATCGATGCTGACCTTACACCCACGACCAGATGCATCCTCAGATC AGGCCGAATTGTCCTTGCCGGAGATTCGGGAATTTGTCGACCAGCACCAT AAGGATTTTTTGGTCGAGGTGGGAAGGACAGCGAATGTGAGCGTCAAGAC ATTTTGGCGGCATTTTATTCGCTTTTTGTCGGGGGATGATGCGGTGCGAG ATTTCAATCAGGGCCTCTCCACGACATTACAGCAGCAGCAACACCAGCAT AAGCTTACCCTTCACCAGCAGCAGCAAAGCTTACGAGCTCAGCACAAGGT GGTCCAAAGCATCCAGCAGCGACCAGAGCAACAGCACTTATTCCAGGTCT CCAGCACCCCTTCTTCCGCCCTGGGCCCCATGGCGGGCACTACGGTCCCT GATCAAACAGTAGCGAGTAGTAATGGTGGTGGAGGAGAGGAGTCCTTTTA CACCGCTGGCGCCAACGAGGCAGTCTTCGCCCTCCAGCAGCAACGACAAC AGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAA CAACAACAGCAACTGCAGGCAGCGCAGCAACACTACGCAGCCTATTACTA CATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAAC AACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTG CAACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTAT GATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGC AGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAA GGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGAT TTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCC CCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCC AATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGC TGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAA ATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA back to top
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