NO02G03810.1, NO02G03810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03810.1
Unique NameNO02G03810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2250
Alignment locationchr2:1034643..1036892 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1034643..1036892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G03810.1 vs.
Match: EWM30324.1 (hypothetical protein Naga_100003g95 [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 2.800e-55
Identity = 276/714 (38.66%), Postives = 364/714 (50.98%), Query Frame = 0
Query:    1 MALNTCNRGSSLNTIVRSVNNFLARALPRLPRYEGLSEGGARSLALENLRDLVRRNEGDLTTEVARGTNQSLRTFWRHFLSFLRDSAGEGELENYVVAGEQIEGRGGGKVEGGVTGLG--RSNGAEVEAVGLRATHEASAAAAGAATEAEATTVAVVGS--GDGEGGEKGVQEGDSGGNSEVEGRR-RRKKKAFTGLALAMLE-EGEDMFGQKPRPYTAPADMDGGRGRGGGRRREGGGKEGLALDPDGVSLDGAGDWEGEGGGDGVGERESPVLIEEND-------EAMPASRSQVLQQQRQSMLPAPVPRIPLHIAMSAQQHLQQQQQQHMDSQSSMRRQPGTVMDLEAREGFLEWMKSNTKMQPVSMTTAMRTANRVLSSMLTLHPRPDASSDQAELSLPEIREFVDQHHKDFLVEVGRTANVSVKTFWRHFIRFLSGDDAVRDFNQGLSTTLQQQQHQHKLTLHQQQQSL-RAQHKVVQSIQQRPEQQ-----------------HLFQVSSTPSSALGPMAGTTVPDQT-------VASSNGGGGEE-SFYTAGANEAVFALQQQRQQQQQQQQQQQQQQQQQQQQQQLQAAQQHYAAYYYMQQQQQQALQQQQQ-------------QQQQQQQRHHQEQQ-------QQQQLQQQQQQQQQQHQQQQAMMQ---------------AQLLMLQAQQQQQMQEEQRHQ 641
            MALNTCNRGSSLNTIVRSVNNFLAR+LPRLPRYE +SEGG+RSL +E+LR L+ R+E +LT EVARGTNQSLRTFWRHF++FLRDS+GEG++E +V  GEQ++      V  GV G G  R      +  GLR + + S    G A E      +  G      + G  G+  G  GG  + E +R RRKK+ F+    +  + E   +  +K R  + P              R  GG  G     DG+             G+GV +R +  L +  D        A    RS    +         +P       M++   +++QQ   MD                AREGF EWMK+NTKMQPVSMTTAMRTANRVL SML LHP+P+ S D+AE+SL +IR FVD+H++DFL EVGRTANVSVKTFWRHFIRFLSGD+AVR+FN  LS +LQQQQHQH L L++QQQ+L +AQ  V+  + ++  +Q                 H   +++T +SA    +  ++P          V   +G  GE  +F+      A         +       Q  +       ++        A  +  Q Q    ++QQQ+              Q+QQQ + HQ  Q       QQQQ  Q+ QQ  QQ + QQ   Q               A   + Q  QQQQ QE Q+ Q
Sbjct:  881 MALNTCNRGSSLNTIVRSVNNFLARSLPRLPRYENMSEGGSRSLDIESLRGLLERSEAELTAEVARGTNQSLRTFWRHFMNFLRDSSGEGDMEYFVTTGEQLDA-DVVPVGVGVPGSGAYRRVADSEKDGGLRGSPDGS----GTAEEDSLGMTSDAGKYFRVPKKGVNGLNGG--GGTFDAEDKRMRRKKRGFSDPEGSTHDTESRSLIPEKRRLSSVPC-------------RVRGGSNG-----DGMK------------GEGVNDRLADSLKQNEDLDVPFTASAQVQQRSLPSSRAITGFTGINLPN------MASASTMRRQQGMVMDR--------------NAREGFTEWMKTNTKMQPVSMTTAMRTANRVLFSMLLLHPQPNTSLDRAEMSLEQIRVFVDEHYQDFLAEVGRTANVSVKTFWRHFIRFLSGDNAVREFNNDLSMSLQQQQHQHNLELYEQQQALQQAQQHVLDQVHKQQHKQEKKLHEHGRGAVELASSHSISLNATSASATDHPSSLSLPSSASAPLLAGVEGKSGRTGEVFAFHGVDPILAASTPAHVTSRSSSVSAHQSYKPLSSSDARRGSVGNAEIAFAFEPQPQNPNVIKQQQESSSSSSSPPPLQKSQEQQQPQLHQSSQTLLLHHPQQQQQPQELQQYHQQLRYQQQQQQQHWAAHLHPSPQQYAAYFYLQQQHQQQQQQEHQKEQ 1537          
The following BLAST results are available for this feature:
BLAST of NO02G03810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30324.12.800e-5538.66hypothetical protein Naga_100003g95 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03810NO02G03810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03810.1NO02G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03810.1.cds1NO02G03810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03810.1 ID=NO02G03810.1|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp
ATGGCTTTGAATACTTGTAATCGTGGGTCGAGCCTGAATACGATCGTGCG
GAGCGTGAACAATTTCCTTGCGCGGGCATTGCCTAGGCTGCCGAGGTATG
AAGGGCTGTCGGAGGGAGGGGCGAGGAGCCTGGCGCTGGAGAATCTTCGG
GATTTGGTGCGACGGAACGAGGGGGACTTGACGACGGAGGTGGCGCGGGG
CACAAACCAGAGTTTGCGGACTTTCTGGCGACACTTTTTGAGTTTTTTGC
GTGACTCGGCAGGAGAGGGGGAGTTGGAGAATTACGTGGTGGCTGGGGAG
CAGATCGAGGGTAGGGGAGGAGGAAAAGTGGAGGGAGGGGTAACGGGCTT
GGGGAGGAGTAATGGGGCTGAAGTGGAGGCGGTTGGTTTGAGGGCGACGC
ATGAAGCATCAGCAGCTGCAGCAGGAGCAGCAACCGAGGCGGAGGCGACG
ACAGTGGCTGTTGTGGGAAGTGGAGATGGAGAAGGGGGAGAAAAAGGAGT
GCAGGAAGGGGATAGTGGAGGTAATAGCGAGGTCGAGGGGAGGCGCCGCA
GAAAGAAAAAGGCATTTACAGGGTTGGCGTTGGCCATGCTGGAAGAGGGA
GAGGACATGTTCGGGCAGAAGCCGCGACCTTACACCGCGCCGGCTGATAT
GGATGGTGGTAGAGGAAGAGGAGGAGGAAGAAGACGAGAAGGAGGTGGAA
AGGAAGGGCTTGCATTGGACCCCGACGGTGTTTCACTGGACGGTGCAGGG
GATTGGGAAGGCGAAGGCGGCGGTGATGGAGTTGGCGAAAGGGAATCTCC
TGTCCTTATCGAGGAAAATGACGAGGCCATGCCTGCCTCTCGCTCCCAAG
TGTTGCAGCAGCAAAGGCAGTCTATGTTACCGGCGCCAGTACCCCGGATT
CCGCTTCACATTGCAATGAGCGCGCAGCAGCATTTGCAGCAGCAGCAGCA
GCAGCATATGGACTCCCAGTCATCGATGCGTCGGCAGCCGGGGACCGTTA
TGGATTTGGAGGCGCGGGAAGGGTTCCTGGAATGGATGAAAAGCAATACC
AAGATGCAGCCTGTTTCGATGACCACAGCCATGCGAACAGCAAACCGCGT
GTTGTCATCGATGCTGACCTTACACCCACGACCAGATGCATCCTCAGATC
AGGCCGAATTGTCCTTGCCGGAGATTCGGGAATTTGTCGACCAGCACCAT
AAGGATTTTTTGGTCGAGGTGGGAAGGACAGCGAATGTGAGCGTCAAGAC
ATTTTGGCGGCATTTTATTCGCTTTTTGTCGGGGGATGATGCGGTGCGAG
ATTTCAATCAGGGCCTCTCCACGACATTACAGCAGCAGCAACACCAGCAT
AAGCTTACCCTTCACCAGCAGCAGCAAAGCTTACGAGCTCAGCACAAGGT
GGTCCAAAGCATCCAGCAGCGACCAGAGCAACAGCACTTATTCCAGGTCT
CCAGCACCCCTTCTTCCGCCCTGGGCCCCATGGCGGGCACTACGGTCCCT
GATCAAACAGTAGCGAGTAGTAATGGTGGTGGAGGAGAGGAGTCCTTTTA
CACCGCTGGCGCCAACGAGGCAGTCTTCGCCCTCCAGCAGCAACGACAAC
AGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAA
CAACAACAGCAACTGCAGGCAGCGCAGCAACACTACGCAGCCTATTACTA
CATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAAC
AACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTG
CAACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTAT
GATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGC
AGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAA
GGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGAT
TTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCC
CCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCC
AATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGC
TGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAA
ATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA
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protein sequence of NO02G03810.1

>NO02G03810.1-protein ID=NO02G03810.1-protein|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp
MALNTCNRGSSLNTIVRSVNNFLARALPRLPRYEGLSEGGARSLALENLR
DLVRRNEGDLTTEVARGTNQSLRTFWRHFLSFLRDSAGEGELENYVVAGE
QIEGRGGGKVEGGVTGLGRSNGAEVEAVGLRATHEASAAAAGAATEAEAT
TVAVVGSGDGEGGEKGVQEGDSGGNSEVEGRRRRKKKAFTGLALAMLEEG
EDMFGQKPRPYTAPADMDGGRGRGGGRRREGGGKEGLALDPDGVSLDGAG
DWEGEGGGDGVGERESPVLIEENDEAMPASRSQVLQQQRQSMLPAPVPRI
PLHIAMSAQQHLQQQQQQHMDSQSSMRRQPGTVMDLEAREGFLEWMKSNT
KMQPVSMTTAMRTANRVLSSMLTLHPRPDASSDQAELSLPEIREFVDQHH
KDFLVEVGRTANVSVKTFWRHFIRFLSGDDAVRDFNQGLSTTLQQQQHQH
KLTLHQQQQSLRAQHKVVQSIQQRPEQQHLFQVSSTPSSALGPMAGTTVP
DQTVASSNGGGGEESFYTAGANEAVFALQQQRQQQQQQQQQQQQQQQQQQ
QQQQLQAAQQHYAAYYYMQQQQQQALQQQQQQQQQQQQRHHQEQQQQQQL
QQQQQQQQQQHQQQQAMMQAQLLMLQAQQQQQMQEEQRHQSIIHADNAAE
GLGGGGDVDNGQQLSVISQDLLDRFEAYLGNYFPQPQIWATLRDVVSLTP
NIMKEAGEHIFLQDPHAVTSFFDRHYAHPLVVANVQQIKHFYDFCRASS*
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mRNA from alignment at chr2:1034643..1036892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03810.1 ID=NO02G03810.1|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at chr2:1034643..1036892- (Nannochloropsis oceanica)
ATGGCTTTGAATACTTGTAATCGTGGGTCGAGCCTGAATACGATCGTGCG GAGCGTGAACAATTTCCTTGCGCGGGCATTGCCTAGGCTGCCGAGGTATG AAGGGCTGTCGGAGGGAGGGGCGAGGAGCCTGGCGCTGGAGAATCTTCGG GATTTGGTGCGACGGAACGAGGGGGACTTGACGACGGAGGTGGCGCGGGG CACAAACCAGAGTTTGCGGACTTTCTGGCGACACTTTTTGAGTTTTTTGC GTGACTCGGCAGGAGAGGGGGAGTTGGAGAATTACGTGGTGGCTGGGGAG CAGATCGAGGGTAGGGGAGGAGGAAAAGTGGAGGGAGGGGTAACGGGCTT GGGGAGGAGTAATGGGGCTGAAGTGGAGGCGGTTGGTTTGAGGGCGACGC ATGAAGCATCAGCAGCTGCAGCAGGAGCAGCAACCGAGGCGGAGGCGACG ACAGTGGCTGTTGTGGGAAGTGGAGATGGAGAAGGGGGAGAAAAAGGAGT GCAGGAAGGGGATAGTGGAGGTAATAGCGAGGTCGAGGGGAGGCGCCGCA GAAAGAAAAAGGCATTTACAGGGTTGGCGTTGGCCATGCTGGAAGAGGGA GAGGACATGTTCGGGCAGAAGCCGCGACCTTACACCGCGCCGGCTGATAT GGATGGTGGTAGAGGAAGAGGAGGAGGAAGAAGACGAGAAGGAGGTGGAA AGGAAGGGCTTGCATTGGACCCCGACGGTGTTTCACTGGACGGTGCAGGG GATTGGGAAGGCGAAGGCGGCGGTGATGGAGTTGGCGAAAGGGAATCTCC TGTCCTTATCGAGGAAAATGACGAGGCCATGCCTGCCTCTCGCTCCCAAG TGTTGCAGCAGCAAAGGCAGTCTATGTTACCGGCGCCAGTACCCCGGATT CCGCTTCACATTGCAATGAGCGCGCAGCAGCATTTGCAGCAGCAGCAGCA GCAGCATATGGACTCCCAGTCATCGATGCGTCGGCAGCCGGGGACCGTTA TGGATTTGGAGGCGCGGGAAGGGTTCCTGGAATGGATGAAAAGCAATACC AAGATGCAGCCTGTTTCGATGACCACAGCCATGCGAACAGCAAACCGCGT GTTGTCATCGATGCTGACCTTACACCCACGACCAGATGCATCCTCAGATC AGGCCGAATTGTCCTTGCCGGAGATTCGGGAATTTGTCGACCAGCACCAT AAGGATTTTTTGGTCGAGGTGGGAAGGACAGCGAATGTGAGCGTCAAGAC ATTTTGGCGGCATTTTATTCGCTTTTTGTCGGGGGATGATGCGGTGCGAG ATTTCAATCAGGGCCTCTCCACGACATTACAGCAGCAGCAACACCAGCAT AAGCTTACCCTTCACCAGCAGCAGCAAAGCTTACGAGCTCAGCACAAGGT GGTCCAAAGCATCCAGCAGCGACCAGAGCAACAGCACTTATTCCAGGTCT CCAGCACCCCTTCTTCCGCCCTGGGCCCCATGGCGGGCACTACGGTCCCT GATCAAACAGTAGCGAGTAGTAATGGTGGTGGAGGAGAGGAGTCCTTTTA CACCGCTGGCGCCAACGAGGCAGTCTTCGCCCTCCAGCAGCAACGACAAC AGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAA CAACAACAGCAACTGCAGGCAGCGCAGCAACACTACGCAGCCTATTACTA CATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAAC AACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTG CAACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTAT GATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGC AGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAA GGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGAT TTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCC CCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCC AATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGC TGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAA ATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA
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Coding sequence (CDS) from alignment at chr2:1034643..1036892-

>NO02G03810.1 ID=NO02G03810.1|Name=NO02G03810.1|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at chr2:1034643..1036892- (Nannochloropsis oceanica)
ATGGCTTTGAATACTTGTAATCGTGGGTCGAGCCTGAATACGATCGTGCG
GAGCGTGAACAATTTCCTTGCGCGGGCATTGCCTAGGCTGCCGAGGTATG
AAGGGCTGTCGGAGGGAGGGGCGAGGAGCCTGGCGCTGGAGAATCTTCGG
GATTTGGTGCGACGGAACGAGGGGGACTTGACGACGGAGGTGGCGCGGGG
CACAAACCAGAGTTTGCGGACTTTCTGGCGACACTTTTTGAGTTTTTTGC
GTGACTCGGCAGGAGAGGGGGAGTTGGAGAATTACGTGGTGGCTGGGGAG
CAGATCGAGGGTAGGGGAGGAGGAAAAGTGGAGGGAGGGGTAACGGGCTT
GGGGAGGAGTAATGGGGCTGAAGTGGAGGCGGTTGGTTTGAGGGCGACGC
ATGAAGCATCAGCAGCTGCAGCAGGAGCAGCAACCGAGGCGGAGGCGACG
ACAGTGGCTGTTGTGGGAAGTGGAGATGGAGAAGGGGGAGAAAAAGGAGT
GCAGGAAGGGGATAGTGGAGGTAATAGCGAGGTCGAGGGGAGGCGCCGCA
GAAAGAAAAAGGCATTTACAGGGTTGGCGTTGGCCATGCTGGAAGAGGGA
GAGGACATGTTCGGGCAGAAGCCGCGACCTTACACCGCGCCGGCTGATAT
GGATGGTGGTAGAGGAAGAGGAGGAGGAAGAAGACGAGAAGGAGGTGGAA
AGGAAGGGCTTGCATTGGACCCCGACGGTGTTTCACTGGACGGTGCAGGG
GATTGGGAAGGCGAAGGCGGCGGTGATGGAGTTGGCGAAAGGGAATCTCC
TGTCCTTATCGAGGAAAATGACGAGGCCATGCCTGCCTCTCGCTCCCAAG
TGTTGCAGCAGCAAAGGCAGTCTATGTTACCGGCGCCAGTACCCCGGATT
CCGCTTCACATTGCAATGAGCGCGCAGCAGCATTTGCAGCAGCAGCAGCA
GCAGCATATGGACTCCCAGTCATCGATGCGTCGGCAGCCGGGGACCGTTA
TGGATTTGGAGGCGCGGGAAGGGTTCCTGGAATGGATGAAAAGCAATACC
AAGATGCAGCCTGTTTCGATGACCACAGCCATGCGAACAGCAAACCGCGT
GTTGTCATCGATGCTGACCTTACACCCACGACCAGATGCATCCTCAGATC
AGGCCGAATTGTCCTTGCCGGAGATTCGGGAATTTGTCGACCAGCACCAT
AAGGATTTTTTGGTCGAGGTGGGAAGGACAGCGAATGTGAGCGTCAAGAC
ATTTTGGCGGCATTTTATTCGCTTTTTGTCGGGGGATGATGCGGTGCGAG
ATTTCAATCAGGGCCTCTCCACGACATTACAGCAGCAGCAACACCAGCAT
AAGCTTACCCTTCACCAGCAGCAGCAAAGCTTACGAGCTCAGCACAAGGT
GGTCCAAAGCATCCAGCAGCGACCAGAGCAACAGCACTTATTCCAGGTCT
CCAGCACCCCTTCTTCCGCCCTGGGCCCCATGGCGGGCACTACGGTCCCT
GATCAAACAGTAGCGAGTAGTAATGGTGGTGGAGGAGAGGAGTCCTTTTA
CACCGCTGGCGCCAACGAGGCAGTCTTCGCCCTCCAGCAGCAACGACAAC
AGCAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAA
CAACAACAGCAACTGCAGGCAGCGCAGCAACACTACGCAGCCTATTACTA
CATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAAC
AACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTG
CAACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTAT
GATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGC
AGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAA
GGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGAT
TTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCC
CCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCC
AATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGC
TGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAA
ATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA
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Synonyms
Publications