NO02G03730, NO02G03730 (gene) Nannochloropsis oceanica

Overview
NameNO02G03730
Unique NameNO02G03730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2274
Alignment locationchr2:1006694..1008967 +

Link to JBrowse

Properties
Property NameValue
DescriptionTia1 cytotoxic granule-associated rna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1006694..1008967 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO02G03730 vs. NCBI_GenBank
Match: EWM30260.1 (tia1 cytotoxic granule-associated rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 412.1 bits (1058), Expect = 3.300e-111
Identity = 228/414 (55.07%), Postives = 272/414 (65.70%), Query Frame = 0
Query:  140 KETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHG---VSSRPYSVHVQFEAE-VITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGEGVALSKSHGSGVMHMDRGVSSSPPTMMQHYAPSCRPLHHLHPDADGGVEYMQHTHHPS---------THQD--MIPHYFYDLDHQHGGAGWQMVPPFLS 539
            KE + EPK+D ILFIGDLARGLTE ++ QAF  VG V+MVDIKRDK+TMRNLGYGFVQMS+ E+AA AK+RMQ  +IQGRRIR+GWAQRNT LFIGDLD ST ++DLHR FG FG LY + +YLRQGK GKYGS KF  R+DAETARREMHGR+L  GT PIRVVWHHPQT                                 VSSRPYSVHV FEA+ +   +TE L++  FAPFG++IAVILPQGPGIL S+       CRRGYGFVHF+GS+ GR CAIEAIRTLQGEI  GIRLQCAFS+KPG PVR   G  L++S G+  M + RG  S P T M+H     R  + L   A+   + +  ++  S          H D  M+       +H    +  + +PPFLS
Sbjct:   95 KEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYG--LTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLS 506          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_004346589.1 (RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff] >ELR21644.1 RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 186.8 bits (473), Expect = 2.200e-43
Identity = 115/309 (37.22%), Postives = 161/309 (52.10%), Query Frame = 0
Query:  134 GGLAAYKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKP 443
            G L +  E      ++  LFIGDLARGL E  L +AF+  G +  V+IKRD++T  +LGYGFV + +RE+A AAKK M    + GR IR+GWAQ+NT LFIGDLD S T   L   F  FGP+YE++T++   K   YG  +F  R+ AE A+REM+ ++LGA    IR+ W                                    + + + VH+QFE      +TE  + + F  FG V++V LP+  G L            RG+GF+++  +  G   A  AI TL      G+R+QC + KKP
Sbjct:   47 GSLDSLPEAGEFEDDERCLFIGDLARGLNEDQLREAFDPFGVIS-VEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAMHRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFV---KNRNYGFVRFRHRKHAEMAKREMNNKVLGARA--IRIGW---------------------------------GDANYQRHCVHIQFEPAESEALTESEVIAKFEEFGTVMSVNLPRNQGQL------------RGFGFIYYDDTDAGENSAARAITTLNNSPICGVRIQCNYGKKP 304          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: CBJ26054.1 (poly(A) binding protein, cytoplasmic 4-like [Ectocarpus siliculosus])

HSP 1 Score: 159.5 bits (402), Expect = 3.800e-35
Identity = 137/335 (40.90%), Postives = 192/335 (57.31%), Query Frame = 0
Query:  148 EDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLD-ASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYP-IRVVWHHPQT-------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSR----PYSVHVQFEAEV--ITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLG 450
            E+  LF+GDLAR LTE  L +AFE  G+V  V IKRD+ T +NLGYGFV++S+ +EA AAK+ MQ VE+ GRR+RVGWAQ+NT+L++G L+  + T + L R F  FGPL ++ T ++ G   K+G  K+  R  AE A++E++ R    G  P + + W+  ++                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXH    R     ++VHVQFE +   ++ + E ++   F  +  V+ +++P       S G R    C   + FVHF  +  G R A +AI+ L G     +R+ C  S+  G   R G
Sbjct:  203 EECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPG--AKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSRHPRGEVSSHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRC---WAFVHFPPTPDGERAAADAIKGLNGTTISELRVHCTMSR--GGSTRAG 530          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: ETO28118.1 (hypothetical protein RFI_09014, partial [Reticulomyxa filosa])

HSP 1 Score: 132.1 bits (331), Expect = 6.600e-27
Identity = 101/326 (30.98%), Postives = 132/326 (40.49%), Query Frame = 0
Query:  166 LVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALF---------------------------IGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILG-AGT-----YPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVIT-----------------TITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442
            + + F   G V+ VDIKRDK+T  NLGYGFV   +REEA  AK+ M  +EI GR IR+GWAQ+NT LF                           +GDLD+    + L   F  FGP+Y D T++   K   YG  KF  R  AE A+  + G+ L   GT      PIR+ W    T                                 +   VHVQF++  +T                  + E      F  FG V+ V LP           R S    +GYGF+HF  +  G   A  AI TL       + +QC F K+
Sbjct:    3 MAEIFSKFGAVENVDIKRDKVTKNNLGYGFVTFKSREEAEKAKRNMHGMEIGGRTIRIGWAQKNTNLFVKAFLFVCLFAKGGGVEGCKLYLLRTVVGDLDSRIDAEHLKTIFKQFGPIYNDDTFV---KNNGYGFVKFKHRTHAEKAKATLDGKFLTIPGTDQQTQRPIRIGWGDANT---------------------------------QRNCVHVQFDSTHVTHHTGNXXXXXXXXGTQMDLKESDFREVFQRFGRVVKVSLP-----------RFSDRKLKGYGFIHFEENDDGEEAAARAITTLSYGAINNVVMQCNFGKR 281          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: ETO09431.1 (hypothetical protein RFI_27944 [Reticulomyxa filosa])

HSP 1 Score: 122.9 bits (307), Expect = 4.000e-24
Identity = 99/316 (31.33%), Postives = 135/316 (42.72%), Query Frame = 0
Query:  148 EDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDL----------------DASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILG-AGT-----YPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKK 442
            +D+ LFIGDL+R ++E  + + F   G V+ V+IKRDK+T  NLGYGFV      +A      M  +E+ GR IR+GWAQ+NT LF+  +                      D L   F  FGP+Y D T++   K   YG  KF  R  AE A+  + G+ L   GT      PIR+ W    T                         XXX         V V  +        E      F  FG V+ V LP+ P     +G+       +GY FVHF  + +G   A  +I TL      G+ +QC F K+
Sbjct:  214 DDTSLFIGDLSRHISEDHMREMFSKFGNVEHVEIKRDKVTKNNLGYGFVTFKVCNDAL-----MHGMELGGRPIRIGWAQKNTNLFVKRVFFFIFLTFHFFSRVLWKEIIDADHLKTIFKQFGPIYNDDTFV---KKNGYGFVKFKHRTHAEKAKAMLDGKFLTIPGTDEQTERPIRIGWGDANTQRNCVHVQFDGSHRHTHTDCVRGDHXXXXXXXXXXXGVQVDMK--------ENDFREVFQQFGYVVKVSLPRFP-----DGQ------LKGYAFVHFEENDKGEESAARSITTLSHGKINGVIIQCNFGKR 502          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_005709003.1 (RNA-binding protein [Galdieria sulphuraria] >EME32483.1 RNA-binding protein [Galdieria sulphuraria])

HSP 1 Score: 107.5 bits (267), Expect = 1.700e-19
Identity = 81/289 (28.03%), Postives = 125/289 (43.25%), Query Frame = 0
Query:  152 LFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSK 441
            +F+GDL   + E  L+ AF   GKV  VD+KRDK T   LGY FV     EEA  A K    + +  RRIR G  QRN  L I  +D+    +++   F  +G L E++TY  +     YG  +F  R+DAE A++ + G  +  G + IRV W + +                                    Y++   FE E    IT   + +    FG V  + +         +G++T      G G V+F+   +G   A +A++ +  +   G ++ C F K
Sbjct:  179 VFVGDLGGDINEDILLDAFSRFGKVTAVDLKRDKYTGEILGYAFVYFVQEEEAQKAMKLGNGMSLMNRRIRTGCPQRNATLHIPQIDSEINDEEIKTTFRKYGELVEEETYFIR---RCYGYIRFQAREDAERAKQHLDGATI--GKFKIRVEWANTELLR---------------------------------YAIQFHFEIERSNLITVESVKARMTRFGTVTKIEI-----FSDDQGQKT------GLGRVYFTPDKEGELAASKAVKFV--KYISGTKVWCTFLK 416          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: CEP00984.1 (hypothetical protein PBRA_008296 [Plasmodiophora brassicae])

HSP 1 Score: 106.3 bits (264), Expect = 3.900e-19
Identity = 93/352 (26.42%), Postives = 139/352 (39.49%), Query Frame = 0
Query:  144 VEPKEDSILFIGDLARGLTEA----------------------DLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGEGVALSKSHGSGVMHMDRGVSSSP 474
            ++  E+  LF+GD+    TE                       D++ AF   G V  V IK D++T + LGYGFV  STR   AAA+      E+  +RIR+GWA++N  L + ++  + T   L    G FGP   ++    Q +     S KFA R  AE  R +  G +L  G  P  V W +                                       +VHV F  +    +T+  L   F+ FG V  V+LP+          R   T  +G+GFV++     G R A  AI+ + G    G  + C +  +  +   L + +  S+ HG       RG    P
Sbjct:   44 IDDAENRTLFLGDVPAEATEVSPMPPANRLRSPPHQTLTYVQMDVLMAFCPYGDVDQVQIKVDRITKKPLGYGFVTFSTR---AAAESAFSHQELCSQRIRIGWARKNHTLVLRNVGPAPTASSLEAMLGRFGPFEIEEILPGQSQC----SVKFATRAIAERVREQCQGVVLHEGCPPCVVDWSYTNLN-----------------------------------NVHVHFGKD--RAVTDADLRDVFSKFGPVEKVVLPR---------HRNGST--KGFGFVYYPFGDDGERSAAAAIKAMNGGTLNGGVVICNYGHRQHSARALLKRMMSSRRHGRPATGKARGYPYQP 340          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_024400989.1 (heterogeneous nuclear ribonucleoprotein Q-like [Physcomitrella patens] >XP_024400990.1 heterogeneous nuclear ribonucleoprotein Q-like [Physcomitrella patens] >XP_024400991.1 heterogeneous nuclear ribonucleoprotein Q-like [Physcomitrella patens] >XP_024400992.1 heterogeneous nuclear ribonucleoprotein Q-like [Physcomitrella patens] >PNR35679.1 hypothetical protein PHYPA_021529 [Physcomitrella patens])

HSP 1 Score: 93.2 bits (230), Expect = 3.400e-15
Identity = 77/301 (25.58%), Postives = 122/301 (40.53%), Query Frame = 0
Query:  146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQ----GKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKP 443
            P   S +F+G + R  TE DL       G V  V + +DK T +N GY FV     E A  A + + D E++GR++R   +Q    LF+G++  +   ++L       GP  +    L+     G+   +G  ++     AE ARREM       GT    + W  P++                                S    V V +   +  ++TE  L   F   GE++ V+LP              G  +R +GFVHFS  +Q    A++AI   +    +G  L+ + +K P
Sbjct:  121 PPHGSEIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLKDKDTGQNKGYAFVTFLNEECAEKAIETLNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWEKEELESVLSEQGPGIQSVELLKDPKTPGRNRGFGFVEYYNHACAEHARREMSKSSFRLGTNAPTISWADPRSGPDV----------------------------SAMSQVKVVYVRNLPDSVTEEQLQKLFERHGEIVKVVLP----------ATKPGQAKRDFGFVHFSDRAQ----ALKAIEKTEVYELEGRILETSLAKPP 379          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: XP_024390737.1 (heterogeneous nuclear ribonucleoprotein Q-like [Physcomitrella patens] >XP_024390738.1 heterogeneous nuclear ribonucleoprotein Q-like [Physcomitrella patens] >XP_024390740.1 heterogeneous nuclear ribonucleoprotein Q-like [Physcomitrella patens] >PNR43302.1 hypothetical protein PHYPA_015682 [Physcomitrella patens])

HSP 1 Score: 92.8 bits (229), Expect = 4.400e-15
Identity = 78/308 (25.32%), Postives = 124/308 (40.26%), Query Frame = 0
Query:  146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQ----GKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLG 450
            P   S +F+G + R  TE DL       G+V  V + +DK T +N GY FV     E A  A + + D E++GR++R   +Q    LF+G++  +   ++L +  G  GP  +    L+     G+   +   ++     AE ARREM        T    + W  P+                                +S    V V +   +  ++TE  L   F   GEV  V+LP              G  +R +GFVHFS  +Q    A++AI   +    +G  L+ + +K P     +G
Sbjct:  119 PPHGSEIFVGGITRDTTEEDLRTLCSSCGEVYEVRLLKDKDTGQNKGYAFVTFMNEEYAEKAIELLNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWEKEELEKVLGEQGPGIQSVELLKDPKTPGRNRGFAFVEYYNHACAEHARREMSKTSFRLETNAPTISWADPRNGPD----------------------------ASAMSQVKVVYVRNLPDSVTEEQLQKLFERHGEVTKVVLPAS----------KPGQAKRDFGFVHFSDRAQ----ALKAIEKTEVYELEGRTLETSLAKPPAEKRPIG 384          
BLAST of NO02G03730 vs. NCBI_GenBank
Match: PTQ44587.1 (hypothetical protein MARPO_0019s0028 [Marchantia polymorpha] >PTQ44588.1 hypothetical protein MARPO_0019s0028 [Marchantia polymorpha] >PTQ44589.1 hypothetical protein MARPO_0019s0028 [Marchantia polymorpha])

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-13
Identity = 80/309 (25.89%), Postives = 123/309 (39.81%), Query Frame = 0
Query:  146 PKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQ----GKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGVSSRPYS-VHVQFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLG 450
            P   S +F+G + R   E DL    +  G +  V + +DK T +N GY FV  +TRE A  A + + D +++GR++R   +Q    LF+G++  +   D+L +     GP  +    L+     GK   +   ++     AE ARR M       G+    + W  P+                              G  +   S V V +   +  T+TE  L   F   GEV  V+LP              G  +R +GFVHFS     R  A++AI         G  L+ + +K P     LG
Sbjct:  129 PPHGSEVFVGGVTRDTAEEDLRSLCQNCGDIYEVRLLKDKDTGQNKGYAFVTFTTRESAEKAIETLNDTDLKGRKLRFSHSQSKHRLFVGNIPKNWDKDELEKVLAEQGPGIQSVELLKDPKNPGKNRGFAFVEYYNHACAEHARRVMSKPNFRLGSNAPTISWADPR-----------------------------GGADTTSMSQVKVVYVRNLPDTVTEEQLQKLFEHHGEVTKVVLPSS----------KPGQSKRDFGFVHFS----ERSSALKAIEKTATYELGGRVLETSLAKPPTEKRPLG 394          
The following BLAST results are available for this feature:
BLAST of NO02G03730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30260.13.300e-11155.07tia1 cytotoxic granule-associated rna binding prot... [more]
XP_004346589.12.200e-4337.22RNA recognition motif domain containing protein [A... [more]
CBJ26054.13.800e-3540.90poly(A) binding protein, cytoplasmic 4-like [Ectoc... [more]
ETO28118.16.600e-2730.98hypothetical protein RFI_09014, partial [Reticulom... [more]
ETO09431.14.000e-2431.33hypothetical protein RFI_27944 [Reticulomyxa filos... [more]
XP_005709003.11.700e-1928.03RNA-binding protein [Galdieria sulphuraria] >EME32... [more]
CEP00984.13.900e-1926.42hypothetical protein PBRA_008296 [Plasmodiophora b... [more]
XP_024400989.13.400e-1525.58heterogeneous nuclear ribonucleoprotein Q-like [Ph... [more]
XP_024390737.14.400e-1525.32heterogeneous nuclear ribonucleoprotein Q-like [Ph... [more]
PTQ44587.11.100e-1325.89hypothetical protein MARPO_0019s0028 [Marchantia p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007033NSK007033Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03730.1NO02G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574812gene_964Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g102gene370Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03730.1NO02G03730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03730 ID=NO02G03730|Name=NO02G03730|organism=Nannochloropsis oceanica|type=gene|length=2274bp
ATGgtacctgttgacaacatcttttattccatatatttccctccaaagga
ccaaccttcccaacatactgctgtcatcagACTGGTTCCAAAGAGTCCAC
CCTCGAGTCCTCCCCCACACGACCAACTAGACAGGCCGGGCTGCATGAGg
tacacgagtctagccgtgcttcgggaaatcactgtagagcatagcgattc
aattgcgggaataacatctagtcattatccgcctactctctattctaccc
aaaacaccactcccatttaatagACGCGACAAATAATGACGCCGGAGGAC
GCAGCTACCACCACGGCCGCCCGATGCACGGCTGCCACGGAAGAGCAAGA
AATTACCAAACTAACCGGAAGCCTCGCGACCCTCAGCACGGCATCTTCCT
CGGAGAATAGGAATGCGATGAAGCAATTTCCAGATACCACACAAGAGGAC
AACCGCGAGCATGCCCACCAGAAGCACCAGCAGCGCCAGCAGCAACAGCA
CCCGCAACAACAACAGTACGAGCAGCATCAGCAAGAGTACAATCATCAGC
TGCACGATCATCAGCAGCAGTATCAGCATCAATACGAAGAGGGGCACGAC
GGCGGGCTGGCGGCGTATAAGGAAACGCAAGTAGAGCCGAAAGAGGACAG
TATTCTATTCATCGGTGACTTGGCTCGTGGCCTCACCGAGGCGGACTTGG
TGCAAGCCTTTGAATGTGTGGGCAAGGTGCAAATGGTGGACATCAAACGG
GACAAGCTGACCATGCGCAATCTGGGATATGGCTTTGTGCAAATGAGCAC
GCGGGAGGAAGCCGCGGCCGCGAAAAAGCGCATGCAGGACGTGGAAATCC
AAGGACGACGCATTCGCGTCGGATGGGCGCAGCGCAACACGGCTTTATTT
ATAGGTGATCTGGACGCGAGCACCACTATCGACGACCTCCACCGCGCCTT
CGGTCTCTTTGGACCTTTGTACGAAGACCAGACCTACCTTCGACAGGGGA
AATACGGCAAGTATGGTTCGTGCAAGTTTGCGCAGCGCCAAGACGCAGAA
ACTGCCCGCCGGGAGATGCATGGTCGGATCCTTGGTGCTGGTACGTATCC
GATTCGTGTCGTTTGGCACCATCCCCAGACTAGCAGCACAGGCAGCGGTG
GCCCCTCGGCGTCCACTTTCCACCACCACTCCCACGGGCTGCAGCATGTC
CCGCCTCCACCCCCCCACGGCGTGTCCAGTCGGCCTTACTCCGTACATGT
ACAGTTTGAGGCCGAAGTCATCACCACGATTACAGAGGGCTTGCTCCACA
GCTTCTTTGCGCCGTTTGGAGAAGTGATTGCCGTGATCCTCCCGCAGGGT
CCTGGCATACTCTCATCCGAAGGTGAGAGGACGAGCGGCACCTGTCGTCG
TGGGTATGGTTTTGTGCATTTCAGTGGTTCGTCGCAGGGGCGAAGATGTG
CGATTGAGGCTATTCGGACGTTGCAAGGGGAAATCTCACAAGGCATTCGA
TTGCAATGCGCTTTTAGTAAGAAACCCGGTGCGCCCGTTCGTCTTGGGGA
AGGGGTTGCATTGAGCAAAAGCCACGGGAGCGGGGTCATGCACATGGATC
GTGGAGTGTCCTCTTCTCCACCGACGATGATGCAGCATTATGCCCCTTCG
TGTCGCCCTCTGCACCACCTTCACCCAGATGCCGACGGTGGGGTGGAATA
CATGCAGCACACACACCACCCCTCCACGCACCAAGACATGATACCGCACT
ACTTCTACGATCTGGATCACCAGCACGGCGGTGCAGGATGGCAAATGGTT
CCTCCTTTCCTATCGTCCACTTCCTCTTCGCTGCCCCCTTCCTCTGCATC
AACGGCCACTTCCGGCCCTCATCTCAAGCCTTATCAACAGCTACGGTACC
AGCAGCCGCCGCTTCATTACGACTACCACCCGCAGCACTATCAGCCACAA
GAGGCTTACTTTCACGGTCAACCTCCTCCTCATAATCAAATGCCGCCATA
TGACATGCCCGACCATGCCTACTACTACAGCCCGCCGCATTCTTTCACTG
TGCATCTTCCTCCTCCTTATCTTCTCCCGCCTTCAGGACAGTGCTTAGAC
GGGGGAAGGGTTCATAAAAGTATGGGTAGCAACAGCGAAAGCAATATGGG
TGGGCCGGGAAATGATCTCGAGTATCACGAAGGTACTGGGTACAGACATG
ATTCGCACGGGGACCCACAAGGAACGGGTATGACTTATCCGCCGACTAGG
GCCGTGCATGGAGGGGCGCGATAG
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protein sequence of NO02G03730.1

>NO02G03730.1-protein ID=NO02G03730.1-protein|Name=NO02G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=691bp
MTGSKESTLESSPTRPTRQAGLHETRQIMTPEDAATTTAARCTAATEEQE
ITKLTGSLATLSTASSSENRNAMKQFPDTTQEDNREHAHQKHQQRQQQQH
PQQQQYEQHQQEYNHQLHDHQQQYQHQYEEGHDGGLAAYKETQVEPKEDS
ILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMST
REEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAF
GLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYP
IRVVWHHPQTSSTGSGGPSASTFHHHSHGLQHVPPPPPHGVSSRPYSVHV
QFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRR
GYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGE
GVALSKSHGSGVMHMDRGVSSSPPTMMQHYAPSCRPLHHLHPDADGGVEY
MQHTHHPSTHQDMIPHYFYDLDHQHGGAGWQMVPPFLSSTSSSLPPSSAS
TATSGPHLKPYQQLRYQQPPLHYDYHPQHYQPQEAYFHGQPPPHNQMPPY
DMPDHAYYYSPPHSFTVHLPPPYLLPPSGQCLDGGRVHKSMGSNSESNMG
GPGNDLEYHEGTGYRHDSHGDPQGTGMTYPPTRAVHGGAR*
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Synonyms
Publications