NO02G03730.1, NO02G03730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03730.1
Unique NameNO02G03730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2073
Alignment locationchr2:1006694..1008967 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1006694..1008967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03730.1 vs.
Match: EWM30260.1 (tia1 cytotoxic granule-associated rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 441.0 bits (1133), Expect = 6.600e-120
Identity = 275/526 (52.28%), Postives = 342/526 (65.02%), Query Frame = 0 
Query:   29 MTPEDAATTTAARCTAATEEQEITKLTGSLATLSTASSSENRNAMKQFPDTTQEDNREHAHQKHQQRQQQQHPQQQQYEQHQQEYNHQLHDHQQQYQHQYEEGHDGGLAAYKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYPIRVVWHHPQ--TSSTGSGGPSASTFHHHSHGLQHVPPPPPHG--VSSRPYSVHVQFEAE-VITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGEGVALSKSHGSGVMHMDRGVSSSPPTMMQHYAPSCRPLHHLHPDADGGVEYMQHTHHPS---------THQD--MIPHYFYDLDHQHGGAGWQMVPPFLS 539
            MT EDAAT+T A   A T E++  +L+ SL +L T S +   +  +Q   T +E +REH  Q+   + QQ++ Q+          ++++H+ +     Q EEG        KE + EPK+D ILFIGDLARGLTE ++ QAF  VG V+MVDIKRDK+TMRNLGYGFVQMS+ E+AA AK+RMQ  +IQGRRIR+GWAQRNT LFIGDLD ST ++DLHR FG FG LY + +YLRQGK GKYGS KF  R+DAETARREMHGR+L  GT PIRVVWHHPQ  T  TG   P  S    HS  L H+PPPPP G  VSSRPYSVHV FEA+ +   +TE L++  FAPFG++IAVILPQGPGIL S+       CRRGYGFVHF+GS+ GR CAIEAIRTLQGEI  GIRLQCAFS+KPG PVR   G  L++S G+  M + RG  S P T M+H     R  + L   A+   + +  ++  S          H D  M+       +H    +  + +PPFLS
Sbjct:    1 MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNS--EQVESTAKESSREHQTQQSLAKCQQENEQENTI-------SNRVHEDETL---QEEEG-----TWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSN-EQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYG--LTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLS 506
The following BLAST results are available for this feature:
BLAST of NO02G03730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30260.16.600e-12052.28tia1 cytotoxic granule-associated rna binding prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03730NO02G03730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03730.1NO02G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03730.1.cds1NO02G03730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03730.1.cds2NO02G03730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03730.1.cds3NO02G03730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03730.1 ID=NO02G03730.1|Name=NO02G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp
ATGACTGGTTCCAAAGAGTCCACCCTCGAGTCCTCCCCCACACGACCAAC
TAGACAGGCCGGGCTGCATGAGACGCGACAAATAATGACGCCGGAGGACG
CAGCTACCACCACGGCCGCCCGATGCACGGCTGCCACGGAAGAGCAAGAA
ATTACCAAACTAACCGGAAGCCTCGCGACCCTCAGCACGGCATCTTCCTC
GGAGAATAGGAATGCGATGAAGCAATTTCCAGATACCACACAAGAGGACA
ACCGCGAGCATGCCCACCAGAAGCACCAGCAGCGCCAGCAGCAACAGCAC
CCGCAACAACAACAGTACGAGCAGCATCAGCAAGAGTACAATCATCAGCT
GCACGATCATCAGCAGCAGTATCAGCATCAATACGAAGAGGGGCACGACG
GCGGGCTGGCGGCGTATAAGGAAACGCAAGTAGAGCCGAAAGAGGACAGT
ATTCTATTCATCGGTGACTTGGCTCGTGGCCTCACCGAGGCGGACTTGGT
GCAAGCCTTTGAATGTGTGGGCAAGGTGCAAATGGTGGACATCAAACGGG
ACAAGCTGACCATGCGCAATCTGGGATATGGCTTTGTGCAAATGAGCACG
CGGGAGGAAGCCGCGGCCGCGAAAAAGCGCATGCAGGACGTGGAAATCCA
AGGACGACGCATTCGCGTCGGATGGGCGCAGCGCAACACGGCTTTATTTA
TAGGTGATCTGGACGCGAGCACCACTATCGACGACCTCCACCGCGCCTTC
GGTCTCTTTGGACCTTTGTACGAAGACCAGACCTACCTTCGACAGGGGAA
ATACGGCAAGTATGGTTCGTGCAAGTTTGCGCAGCGCCAAGACGCAGAAA
CTGCCCGCCGGGAGATGCATGGTCGGATCCTTGGTGCTGGTACGTATCCG
ATTCGTGTCGTTTGGCACCATCCCCAGACTAGCAGCACAGGCAGCGGTGG
CCCCTCGGCGTCCACTTTCCACCACCACTCCCACGGGCTGCAGCATGTCC
CGCCTCCACCCCCCCACGGCGTGTCCAGTCGGCCTTACTCCGTACATGTA
CAGTTTGAGGCCGAAGTCATCACCACGATTACAGAGGGCTTGCTCCACAG
CTTCTTTGCGCCGTTTGGAGAAGTGATTGCCGTGATCCTCCCGCAGGGTC
CTGGCATACTCTCATCCGAAGGTGAGAGGACGAGCGGCACCTGTCGTCGT
GGGTATGGTTTTGTGCATTTCAGTGGTTCGTCGCAGGGGCGAAGATGTGC
GATTGAGGCTATTCGGACGTTGCAAGGGGAAATCTCACAAGGCATTCGAT
TGCAATGCGCTTTTAGTAAGAAACCCGGTGCGCCCGTTCGTCTTGGGGAA
GGGGTTGCATTGAGCAAAAGCCACGGGAGCGGGGTCATGCACATGGATCG
TGGAGTGTCCTCTTCTCCACCGACGATGATGCAGCATTATGCCCCTTCGT
GTCGCCCTCTGCACCACCTTCACCCAGATGCCGACGGTGGGGTGGAATAC
ATGCAGCACACACACCACCCCTCCACGCACCAAGACATGATACCGCACTA
CTTCTACGATCTGGATCACCAGCACGGCGGTGCAGGATGGCAAATGGTTC
CTCCTTTCCTATCGTCCACTTCCTCTTCGCTGCCCCCTTCCTCTGCATCA
ACGGCCACTTCCGGCCCTCATCTCAAGCCTTATCAACAGCTACGGTACCA
GCAGCCGCCGCTTCATTACGACTACCACCCGCAGCACTATCAGCCACAAG
AGGCTTACTTTCACGGTCAACCTCCTCCTCATAATCAAATGCCGCCATAT
GACATGCCCGACCATGCCTACTACTACAGCCCGCCGCATTCTTTCACTGT
GCATCTTCCTCCTCCTTATCTTCTCCCGCCTTCAGGACAGTGCTTAGACG
GGGGAAGGGTTCATAAAAGTATGGGTAGCAACAGCGAAAGCAATATGGGT
GGGCCGGGAAATGATCTCGAGTATCACGAAGGTACTGGGTACAGACATGA
TTCGCACGGGGACCCACAAGGAACGGGTATGACTTATCCGCCGACTAGGG
CCGTGCATGGAGGGGCGCGATAG
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protein sequence of NO02G03730.1

>NO02G03730.1-protein ID=NO02G03730.1-protein|Name=NO02G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=691bp
MTGSKESTLESSPTRPTRQAGLHETRQIMTPEDAATTTAARCTAATEEQE
ITKLTGSLATLSTASSSENRNAMKQFPDTTQEDNREHAHQKHQQRQQQQH
PQQQQYEQHQQEYNHQLHDHQQQYQHQYEEGHDGGLAAYKETQVEPKEDS
ILFIGDLARGLTEADLVQAFECVGKVQMVDIKRDKLTMRNLGYGFVQMST
REEAAAAKKRMQDVEIQGRRIRVGWAQRNTALFIGDLDASTTIDDLHRAF
GLFGPLYEDQTYLRQGKYGKYGSCKFAQRQDAETARREMHGRILGAGTYP
IRVVWHHPQTSSTGSGGPSASTFHHHSHGLQHVPPPPPHGVSSRPYSVHV
QFEAEVITTITEGLLHSFFAPFGEVIAVILPQGPGILSSEGERTSGTCRR
GYGFVHFSGSSQGRRCAIEAIRTLQGEISQGIRLQCAFSKKPGAPVRLGE
GVALSKSHGSGVMHMDRGVSSSPPTMMQHYAPSCRPLHHLHPDADGGVEY
MQHTHHPSTHQDMIPHYFYDLDHQHGGAGWQMVPPFLSSTSSSLPPSSAS
TATSGPHLKPYQQLRYQQPPLHYDYHPQHYQPQEAYFHGQPPPHNQMPPY
DMPDHAYYYSPPHSFTVHLPPPYLLPPSGQCLDGGRVHKSMGSNSESNMG
GPGNDLEYHEGTGYRHDSHGDPQGTGMTYPPTRAVHGGAR*
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mRNA from alignment at chr2:1006694..1008967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03730.1 ID=NO02G03730.1|Name=NO02G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2274bp|location=Sequence derived from alignment at chr2:1006694..1008967+ (Nannochloropsis oceanica)
ATGGTACCTGTTGACAACATCTTTTATTCCATATATTTCCCTCCAAAGGA
CCAACCTTCCCAACATACTGCTGTCATCAGACTGGTTCCAAAGAGTCCAC
CCTCGAGTCCTCCCCCACACGACCAACTAGACAGGCCGGGCTGCATGAGG
TACACGAGTCTAGCCGTGCTTCGGGAAATCACTGTAGAGCATAGCGATTC
AATTGCGGGAATAACATCTAGTCATTATCCGCCTACTCTCTATTCTACCC
AAAACACCACTCCCATTTAATAGACGCGACAAATAATGACGCCGGAGGAC
GCAGCTACCACCACGGCCGCCCGATGCACGGCTGCCACGGAAGAGCAAGA
AATTACCAAACTAACCGGAAGCCTCGCGACCCTCAGCACGGCATCTTCCT
CGGAGAATAGGAATGCGATGAAGCAATTTCCAGATACCACACAAGAGGAC
AACCGCGAGCATGCCCACCAGAAGCACCAGCAGCGCCAGCAGCAACAGCA
CCCGCAACAACAACAGTACGAGCAGCATCAGCAAGAGTACAATCATCAGC
TGCACGATCATCAGCAGCAGTATCAGCATCAATACGAAGAGGGGCACGAC
GGCGGGCTGGCGGCGTATAAGGAAACGCAAGTAGAGCCGAAAGAGGACAG
TATTCTATTCATCGGTGACTTGGCTCGTGGCCTCACCGAGGCGGACTTGG
TGCAAGCCTTTGAATGTGTGGGCAAGGTGCAAATGGTGGACATCAAACGG
GACAAGCTGACCATGCGCAATCTGGGATATGGCTTTGTGCAAATGAGCAC
GCGGGAGGAAGCCGCGGCCGCGAAAAAGCGCATGCAGGACGTGGAAATCC
AAGGACGACGCATTCGCGTCGGATGGGCGCAGCGCAACACGGCTTTATTT
ATAGGTGATCTGGACGCGAGCACCACTATCGACGACCTCCACCGCGCCTT
CGGTCTCTTTGGACCTTTGTACGAAGACCAGACCTACCTTCGACAGGGGA
AATACGGCAAGTATGGTTCGTGCAAGTTTGCGCAGCGCCAAGACGCAGAA
ACTGCCCGCCGGGAGATGCATGGTCGGATCCTTGGTGCTGGTACGTATCC
GATTCGTGTCGTTTGGCACCATCCCCAGACTAGCAGCACAGGCAGCGGTG
GCCCCTCGGCGTCCACTTTCCACCACCACTCCCACGGGCTGCAGCATGTC
CCGCCTCCACCCCCCCACGGCGTGTCCAGTCGGCCTTACTCCGTACATGT
ACAGTTTGAGGCCGAAGTCATCACCACGATTACAGAGGGCTTGCTCCACA
GCTTCTTTGCGCCGTTTGGAGAAGTGATTGCCGTGATCCTCCCGCAGGGT
CCTGGCATACTCTCATCCGAAGGTGAGAGGACGAGCGGCACCTGTCGTCG
TGGGTATGGTTTTGTGCATTTCAGTGGTTCGTCGCAGGGGCGAAGATGTG
CGATTGAGGCTATTCGGACGTTGCAAGGGGAAATCTCACAAGGCATTCGA
TTGCAATGCGCTTTTAGTAAGAAACCCGGTGCGCCCGTTCGTCTTGGGGA
AGGGGTTGCATTGAGCAAAAGCCACGGGAGCGGGGTCATGCACATGGATC
GTGGAGTGTCCTCTTCTCCACCGACGATGATGCAGCATTATGCCCCTTCG
TGTCGCCCTCTGCACCACCTTCACCCAGATGCCGACGGTGGGGTGGAATA
CATGCAGCACACACACCACCCCTCCACGCACCAAGACATGATACCGCACT
ACTTCTACGATCTGGATCACCAGCACGGCGGTGCAGGATGGCAAATGGTT
CCTCCTTTCCTATCGTCCACTTCCTCTTCGCTGCCCCCTTCCTCTGCATC
AACGGCCACTTCCGGCCCTCATCTCAAGCCTTATCAACAGCTACGGTACC
AGCAGCCGCCGCTTCATTACGACTACCACCCGCAGCACTATCAGCCACAA
GAGGCTTACTTTCACGGTCAACCTCCTCCTCATAATCAAATGCCGCCATA
TGACATGCCCGACCATGCCTACTACTACAGCCCGCCGCATTCTTTCACTG
TGCATCTTCCTCCTCCTTATCTTCTCCCGCCTTCAGGACAGTGCTTAGAC
GGGGGAAGGGTTCATAAAAGTATGGGTAGCAACAGCGAAAGCAATATGGG
TGGGCCGGGAAATGATCTCGAGTATCACGAAGGTACTGGGTACAGACATG
ATTCGCACGGGGACCCACAAGGAACGGGTATGACTTATCCGCCGACTAGG
GCCGTGCATGGAGGGGCGCGATAG
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Coding sequence (CDS) from alignment at chr2:1006694..1008967+

>NO02G03730.1 ID=NO02G03730.1|Name=NO02G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=2073bp|location=Sequence derived from alignment at chr2:1006694..1008967+ (Nannochloropsis oceanica)
ATGACTGGTTCCAAAGAGTCCACCCTCGAGTCCTCCCCCACACGACCAAC
TAGACAGGCCGGGCTGCATGAGACGCGACAAATAATGACGCCGGAGGACG
CAGCTACCACCACGGCCGCCCGATGCACGGCTGCCACGGAAGAGCAAGAA
ATTACCAAACTAACCGGAAGCCTCGCGACCCTCAGCACGGCATCTTCCTC
GGAGAATAGGAATGCGATGAAGCAATTTCCAGATACCACACAAGAGGACA
ACCGCGAGCATGCCCACCAGAAGCACCAGCAGCGCCAGCAGCAACAGCAC
CCGCAACAACAACAGTACGAGCAGCATCAGCAAGAGTACAATCATCAGCT
GCACGATCATCAGCAGCAGTATCAGCATCAATACGAAGAGGGGCACGACG
GCGGGCTGGCGGCGTATAAGGAAACGCAAGTAGAGCCGAAAGAGGACAGT
ATTCTATTCATCGGTGACTTGGCTCGTGGCCTCACCGAGGCGGACTTGGT
GCAAGCCTTTGAATGTGTGGGCAAGGTGCAAATGGTGGACATCAAACGGG
ACAAGCTGACCATGCGCAATCTGGGATATGGCTTTGTGCAAATGAGCACG
CGGGAGGAAGCCGCGGCCGCGAAAAAGCGCATGCAGGACGTGGAAATCCA
AGGACGACGCATTCGCGTCGGATGGGCGCAGCGCAACACGGCTTTATTTA
TAGGTGATCTGGACGCGAGCACCACTATCGACGACCTCCACCGCGCCTTC
GGTCTCTTTGGACCTTTGTACGAAGACCAGACCTACCTTCGACAGGGGAA
ATACGGCAAGTATGGTTCGTGCAAGTTTGCGCAGCGCCAAGACGCAGAAA
CTGCCCGCCGGGAGATGCATGGTCGGATCCTTGGTGCTGGTACGTATCCG
ATTCGTGTCGTTTGGCACCATCCCCAGACTAGCAGCACAGGCAGCGGTGG
CCCCTCGGCGTCCACTTTCCACCACCACTCCCACGGGCTGCAGCATGTCC
CGCCTCCACCCCCCCACGGCGTGTCCAGTCGGCCTTACTCCGTACATGTA
CAGTTTGAGGCCGAAGTCATCACCACGATTACAGAGGGCTTGCTCCACAG
CTTCTTTGCGCCGTTTGGAGAAGTGATTGCCGTGATCCTCCCGCAGGGTC
CTGGCATACTCTCATCCGAAGGTGAGAGGACGAGCGGCACCTGTCGTCGT
GGGTATGGTTTTGTGCATTTCAGTGGTTCGTCGCAGGGGCGAAGATGTGC
GATTGAGGCTATTCGGACGTTGCAAGGGGAAATCTCACAAGGCATTCGAT
TGCAATGCGCTTTTAGTAAGAAACCCGGTGCGCCCGTTCGTCTTGGGGAA
GGGGTTGCATTGAGCAAAAGCCACGGGAGCGGGGTCATGCACATGGATCG
TGGAGTGTCCTCTTCTCCACCGACGATGATGCAGCATTATGCCCCTTCGT
GTCGCCCTCTGCACCACCTTCACCCAGATGCCGACGGTGGGGTGGAATAC
ATGCAGCACACACACCACCCCTCCACGCACCAAGACATGATACCGCACTA
CTTCTACGATCTGGATCACCAGCACGGCGGTGCAGGATGGCAAATGGTTC
CTCCTTTCCTATCGTCCACTTCCTCTTCGCTGCCCCCTTCCTCTGCATCA
ACGGCCACTTCCGGCCCTCATCTCAAGCCTTATCAACAGCTACGGTACCA
GCAGCCGCCGCTTCATTACGACTACCACCCGCAGCACTATCAGCCACAAG
AGGCTTACTTTCACGGTCAACCTCCTCCTCATAATCAAATGCCGCCATAT
GACATGCCCGACCATGCCTACTACTACAGCCCGCCGCATTCTTTCACTGT
GCATCTTCCTCCTCCTTATCTTCTCCCGCCTTCAGGACAGTGCTTAGACG
GGGGAAGGGTTCATAAAAGTATGGGTAGCAACAGCGAAAGCAATATGGGT
GGGCCGGGAAATGATCTCGAGTATCACGAAGGTACTGGGTACAGACATGA
TTCGCACGGGGACCCACAAGGAACGGGTATGACTTATCCGCCGACTAGGG
CCGTGCATGGAGGGGCGCGATAG
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Synonyms
Publications