NO02G03580, NO02G03580 (gene) Nannochloropsis oceanica

Overview
NameNO02G03580
Unique NameNO02G03580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1914
Alignment locationchr2:959452..961365 -

Link to JBrowse

Properties
Property NameValue
DescriptionCDGSH iron-sulfur domain-containing protein 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:959452..961365 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0043231intracellular membrane-bounded organelle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: INTERPRO
TermDefinition
IPR018967FeS-contain_CDGSH-typ
Homology
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: OEU08909.1 (hypothetical protein FRACYDRAFT_155578, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.7 bits (234), Expect = 2.100e-16
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   59 KINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVS 119
            KIN  +DL++ KVV M ++  G+K V+CRCW+SGTFPLCDG H+ HN+ATGDN+GPLIV+
Sbjct:    1 KINTLIDLDAEKVVNMEKLDAGKKAVYCRCWKSGTFPLCDGNHVAHNKATGDNVGPLIVT 60
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_002288968.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED94404.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 94.0 bits (232), Expect = 3.600e-16
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 0 
Query:   58 AKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVS 119
            AKIN K+DL+S KVV   ++  G+KKV+CRCW+S TFPLCDGAH+ HN+  GDN+GPLI++
Sbjct:    1 AKINGKIDLDSAKVVNQEQLCVGDKKVYCRCWKSETFPLCDGAHVAHNKEKGDNVGPLILT 61
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: ACO11206.1 (CDGSH iron sulfur domain-containing protein 2 homolog [Caligus rogercresseyi])

HSP 1 Score: 90.5 bits (223), Expect = 4.000e-15
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0 
Query:   57 QAKINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            Q K+N  + LES KVV  V+++  G+K VFCRCW+S  FP CDGAH KHNE TGDN+GPLIV+  K
Sbjct:   53 QYKVNKSIKLESDKVVDTVDIEDIGDKSVFCRCWKSKKFPYCDGAHNKHNEKTGDNVGPLIVAKKK 118
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: ACO15461.1 (CDGSH iron sulfur domain-containing protein 2 homolog [Caligus clemensi])

HSP 1 Score: 89.0 bits (219), Expect = 1.200e-14
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0 
Query:   59 KINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            K+NN + L+S KVV  V+++  G+K VFCRCW+S  FP CDG+H KHN+ TGDN+GPLIVS  K
Sbjct:   82 KLNNSIKLDSDKVVDTVDIEDIGDKSVFCRCWKSKKFPYCDGSHNKHNKQTGDNVGPLIVSNKK 145
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_013300550.1 (zinc finger CDGSH type [Necator americanus] >ETN78323.1 zinc finger CDGSH type [Necator americanus])

HSP 1 Score: 89.0 bits (219), Expect = 1.200e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0 
Query:   55 LCQAKINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIV 118
            L +A++N+KV L + KVV  V+M+  GEKK FCRCW+S  FP CDGAH +HN  TGDN+GPLIV
Sbjct:   72 LRKARVNSKVQLANDKVVDTVDMEDIGEKKAFCRCWKSEKFPYCDGAHTRHNNETGDNVGPLIV 135
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: ADD37940.1 (CDGSH iron sulfur domain-containing protein 2 homolog [Lepeophtheirus salmonis])

HSP 1 Score: 88.6 bits (218), Expect = 1.500e-14
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 0 
Query:   55 LCQA--KINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            LC+A  K+N  + L+S KVV  ++++  G+K VFCRCW+S  FP CDGAH KHNE TGDNIGP+IV   K
Sbjct:   76 LCKAQYKVNKSIKLDSNKVVDSIDIEDIGDKSVFCRCWKSKKFPYCDGAHNKHNETTGDNIGPIIVQKGK 145
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_006032467.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X1 [Alligator sinensis] >XP_019363319.1 PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X1 [Gavialis gangeticus] >XP_019394130.1 PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X1 [Crocodylus porosus])

HSP 1 Score: 87.8 bits (216), Expect = 2.600e-14
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0 
Query:   56 CQAKINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIV 118
            C+A +N  +  ++PKVV   +M+  GEK V+CRCW+S  FPLCDG+H KHNE TGDN+GPLI+
Sbjct:   41 CKAMVNLHIQKDNPKVVHAFDMEDLGEKAVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLII 103
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_006032468.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Alligator sinensis] >XP_019363320.1 PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Gavialis gangeticus] >XP_019394131.1 PREDICTED: CDGSH iron-sulfur domain-containing protein 1 isoform X2 [Crocodylus porosus])

HSP 1 Score: 87.8 bits (216), Expect = 2.600e-14
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0 
Query:   56 CQAKINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIV 118
            C+A +N  +  ++PKVV   +M+  GEK V+CRCW+S  FPLCDG+H KHNE TGDN+GPLI+
Sbjct:   36 CKAMVNLHIQKDNPKVVHAFDMEDLGEKAVYCRCWRSKKFPLCDGSHTKHNEETGDNVGPLII 98
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: KTG35902.1 (hypothetical protein cypCar_00040806 [Cyprinus carpio])

HSP 1 Score: 87.8 bits (216), Expect = 2.600e-14
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0 
Query:   57 QAKINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPKP 123
            ++++N  +D +SPKVV   +M+  G K V+CRCW+S  FP CDGAH KHNE TGDN+GPLI+    P
Sbjct:   36 KSRVNMSIDKDSPKVVHSFDMEDIGNKAVYCRCWRSKKFPYCDGAHTKHNEETGDNVGPLIIKKKNP 102
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_015912094.1 (CDGSH iron-sulfur domain-containing protein 1-like isoform X1 [Parasteatoda tepidariorum])

HSP 1 Score: 87.8 bits (216), Expect = 2.600e-14
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 0 
Query:   57 QAKINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIV 118
            + ++N+K+D++  KVV  V+++  G KKVFCRCW+S  FP CDG+H KHNE TGDN+GPLIV
Sbjct:   33 KGRVNDKIDMDCNKVVHSVDIEDIGNKKVFCRCWKSSKFPYCDGSHTKHNEDTGDNLGPLIV 94
The following BLAST results are available for this feature:
BLAST of NO02G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OEU08909.12.100e-1663.33hypothetical protein FRACYDRAFT_155578, partial [F... [more]
XP_002288968.13.600e-1662.30predicted protein, partial [Thalassiosira pseudona... [more]
ACO11206.14.000e-1560.61CDGSH iron sulfur domain-containing protein 2 homo... [more]
ACO15461.11.200e-1459.38CDGSH iron sulfur domain-containing protein 2 homo... [more]
XP_013300550.11.200e-1460.94zinc finger CDGSH type [Necator americanus] >ETN78... [more]
ADD37940.11.500e-1457.14CDGSH iron sulfur domain-containing protein 2 homo... [more]
XP_006032467.12.600e-1457.14PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
XP_006032468.12.600e-1457.14PREDICTED: CDGSH iron-sulfur domain-containing pro... [more]
KTG35902.12.600e-1453.73hypothetical protein cypCar_00040806 [Cyprinus car... [more]
XP_015912094.12.600e-1458.06CDGSH iron-sulfur domain-containing protein 1-like... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03580.2NO02G03580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G03580.1NO02G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|147199gene_945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03580.2NO02G03580.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G03580.1NO02G03580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03580 ID=NO02G03580|Name=NO02G03580|organism=Nannochloropsis oceanica|type=gene|length=1914bp
TTAAGGAGATTTGTCGAGGGACTCCATGTACCTTTGGCAAGCACAACAGG
CGAGACTGTGAAGGAGGCATCTCTCCACGGTTTTTGCAATGATTTCTTGT
CGGCGGAGGGGGTCGACCTTGAGACACACGCCATAATTCTCAACGCCCAT
TAGGAAAGAGCCATGTTGTGTTGTGTTTGGCGTGAGTTGTTCAGGAAACA
CAAAAAAAGAGGACTTCTGCGATGGGTTGCTTATTGTCCGCACGAAAATA
TCGTGCCTGGAAAAAAGAGACTCTTTTCGATGCAATTTCAACCCCGAACA
GGAGCCACCAATTTCTTGTGTGACTTGACTTATCTCACTTATCCTCAAGA
TCTACCGAATGCGAACGGTCTCGTTGTCTTTGATATCAGACTGGTCGTGC
TCGTCGAACTCGTGGCCGGCCCACATACCTGAGGGAGAGTCTTGCGAATA
AATTGTGTGGACTCATCGTTCCCAACTATTTATTCTCAATTGACTGTCTT
GCGGACAGAAAATTAACGAGTCAATGGACTGTCTTTTCATGTCGCCACTG
CTGGCAGGGGTGGGCTCAGGCCCGGTATTTCCGGGTACCCGACAGACCTG
GGAACTGGACCCGGGCTAAAGGACGACCCGGATCTGGTTTGACAGCCCGG
GTCCGCCAGGAACCCGGGTACCTGGGTGATCAAGTACTGAAATGCTCCAG
ACGAGGCAGAATGGGAAAGGAGAAGGAAGGGACGAGAAGAAAGGGAGGAT
GAGGGCCGTAGCTTCCCTTTCGAAGCCCTCCATCGTGGGGGGGCCTGGCA
CTCAATCCCTCTTCACACAAAACCCTCCGCCAGGTTGACCCGGGTCGCCT
CACGGCCACCAAAATAAAAATATGCGTGACCCGGCACCCACGCGGAACAG
TCTGAACGTGCGTAGTACATGTTGCGAGCTAAAGTACCCGGCAGTGAGAC
TGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACCTC
ACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCACCA
GAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCAAA
TCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTAAC
CCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCCTC
AACTCTTTCTGCAGGTATGTCGGTGGAAGTGAGGCGCCTATGTATGTCTC
CTGCGTCTTGTCCAAGTTTAGAAACTGAGTGTATGAGTCTAGACAGCGCG
CTTGTGCGGGGTTATCTTAAGGGCGTCTTTGCCCACTGCCGCATCCCGTC
GTTGAGCTCGACTCCTCTCCCACATTTCCTTTGTCAGGCCAAGATCAACA
ACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGAAA
CCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGgtaggtagtatgagtagg
acatggggctgcggatggaccacgagcatgttacgaatgtgcggcggctc
atactctgttcgaattacaaataacagGCAAAGTGGAACATTCCCCTTAT
GCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACATCGGT
CCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAACATGAGCGTACAA
GAGGGCAAAAGGACGAGTTGAATAGCCAACAGGAAGTGGACATTGTAGGA
AGTTACACGGGGAAAGTGAGACATGAATGACTGAAGAATGGAGGAAAATC
GAATGAAAACCACGATATGCGATCAATTACAATTCGTCCATTGTAATTTG
TGTCACGCAAGCCGAAATCTCCCTACCCTCAAAAATAATCTCCACGACTC
CCTTTTGTTCGCGT
back to top

protein sequence of NO02G03580.2

>NO02G03580.2-protein ID=NO02G03580.2-protein|Name=NO02G03580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSVEVRRLCMSPASCPSLETECMSLDSALVRGYLKGVFAHCRIPSLSSTP
LPHFLCQAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGA
HMKHNEATGDNIGPLIVSTPKPSN*
back to top

protein sequence of NO02G03580.1

>NO02G03580.1-protein ID=NO02G03580.1-protein|Name=NO02G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MPIIMCTRSSDLVTPPKSFPLPPKSRKMNSMRYVLSTVLVTLFVASDAFM
VPKTSRPQLFLQAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFP
LCDGAHMKHNEATGDNIGPLIVSTPKPSN*
back to top
Synonyms
Publications