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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:959452..961365 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03580.1 vs.
Match: XP_002294522.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335]; EED88356.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 104.4 bits (259), Expect = 2.800e-19 Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0
Query: 63 AKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 127
A+INNK+DL+SPKV TM ++ GEKKV+CRCW+S TFPLCD AH+ HN+ TGDN+GPLIVS K
Sbjct: 2 ARINNKIDLDSPKVATMDKICDGEKKVYCRCWKSETFPLCDAAHVAHNKETGDNVGPLIVSVEK 65
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03580.1 ID=NO02G03580.1|Name=NO02G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp TTAAGGAGATTTGTCGAGGGACTCCATGTACCTTTGGCAAGCACAACAGG CGAGACTGTGAAGGAGGCATCTCTCCACGGTTTTTGCAATGATTTCTTGT CGGCGGAGGGGGTCGACCTTGAGACACACGCCATAATTCTCAACGCCCAT TAGGAAAGAGCCATGTTGTGTTGTGTTTGGCGTGAGTTGTTCAGGAAACA CAAAAAAAGAGGACTTCTGCGATGGGTTGCTTATTGTCCGCACGAAAATA TCGTGCCTGGAAAAAAGAGACTCTTTTCGATGCAATTTCAACCCCGAACA GGAGCCACCAATTTCTTGTGTGACTTGACTTATCTCACTTATCCTCAAGA TCTACCGAATGCGAACGGTCTCGTTGTCTTTGATATCAGACTGGTCGTGC TCGTCGAACTCGTGGCCGGCCCACATACCTGAGGGAGAGTCTTGCGAATA AATTGTGTGGACTCATCGTTCCCAACTATTTATTCTCAATTGACTGTCTT GCGGACAGAAAATTAACGAGTCAATGGACTGTCTTTTCATGTCGCCACTG CTGGCAGGGGTGGGCTCAGGCCCGGTATTTCCGGGTACCCGACAGACCTG GGAACTGGACCCGGGCTAAAGGACGACCCGGATCTGGTTTGACAGCCCGG GTCCGCCAGGAACCCGGGTACCTGGGTGATCAAGTACTGAAATGCTCCAG ACGAGGCAGAATGGGAAAGGAGAAGGAAGGGACGAGAAGAAAGGGAGGAT GAGGGCCGTAGCTTCCCTTTCGAAGCCCTCCATCGTGGGGGGGCCTGGCA CTCAATCCCTCTTCACACAAAACCCTCCGCCAGGTTGACCCGGGTCGCCT CACGGCCACCAAAATAAAAATATGCGTGACCCGGCACCCACGCGGAACAG TCTGAACGTGCGTAGTACATGTTGCGAGCTAAAGTACCCGGCAGTGAGAC TGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACCTC ACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCACCA GAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCAAA TCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTAAC CCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCCTC AACTCTTTCTGCAGGCCAAGATCAACAACAAGGTCGACTTGGAGAGTCCG AAGGTGGTGACCATGGTAGAGATGAAACCTGGAGAGAAGAAGGTGTTCTG CCGCTGCTGGCAAAGTGGAACATTCCCCTTATGCGACGGCGCGCACATGA AGCACAATGAAGCTACGGGGGACAACATCGGTCCTCTCATTGTTTCCACG CCGAAGCCATCCAACTAAACATGAGCGTACAAGAGGGCAAAAGGACGAGT TGAATAGCCAACAGGAAGTGGACATTGTAGGAAGTTACACGGGGAAAGTG AGACATGAATGACTGAAGAATGGAGGAAAATCGAATGAAAACCACGATAT GCGATCAATTACAATTCGTCCATTGTAATTTGTGTCACGCAAGCCGAAAT CTCCCTACCCTCAAAAATAATCTCCACGACTCCCTTTTGTTCGCGT back to topprotein sequence of NO02G03580.1 >NO02G03580.1-protein ID=NO02G03580.1-protein|Name=NO02G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp MPIIMCTRSSDLVTPPKSFPLPPKSRKMNSMRYVLSTVLVTLFVASDAFM VPKTSRPQLFLQAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFP LCDGAHMKHNEATGDNIGPLIVSTPKPSN* back to topmRNA from alignment at chr2:959452..961365- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03580.1 ID=NO02G03580.1|Name=NO02G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr2:959452..961365- (Nannochloropsis oceanica) TTAAGGAGATTTGTCGAGGGACTCCATGTACCTTTGGCAAGCACAACAGG
CGAGACTGTGAAGGAGGCATCTCTCCACGGTTTTTGCAATGATTTCTTGT
CGGCGGAGGGGGTCGACCTTGAGACACACGCCATAATTCTCAACGCCCAT
TAGGAAAGAGCCATGTTGTGTTGTGTTTGGCGTGAGTTGTTCAGGAAACA
CAAAAAAAGAGGACTTCTGCGATGGGTTGCTTATTGTCCGCACGAAAATA
TCGTGCCTGGAAAAAAGAGACTCTTTTCGATGCAATTTCAACCCCGAACA
GGAGCCACCAATTTCTTGTGTGACTTGACTTATCTCACTTATCCTCAAGA
TCTACCGAATGCGAACGGTCTCGTTGTCTTTGATATCAGACTGGTCGTGC
TCGTCGAACTCGTGGCCGGCCCACATACCTGAGGGAGAGTCTTGCGAATA
AATTGTGTGGACTCATCGTTCCCAACTATTTATTCTCAATTGACTGTCTT
GCGGACAGAAAATTAACGAGTCAATGGACTGTCTTTTCATGTCGCCACTG
CTGGCAGGGGTGGGCTCAGGCCCGGTATTTCCGGGTACCCGACAGACCTG
GGAACTGGACCCGGGCTAAAGGACGACCCGGATCTGGTTTGACAGCCCGG
GTCCGCCAGGAACCCGGGTACCTGGGTGATCAAGTACTGAAATGCTCCAG
ACGAGGCAGAATGGGAAAGGAGAAGGAAGGGACGAGAAGAAAGGGAGGAT
GAGGGCCGTAGCTTCCCTTTCGAAGCCCTCCATCGTGGGGGGGCCTGGCA
CTCAATCCCTCTTCACACAAAACCCTCCGCCAGGTTGACCCGGGTCGCCT
CACGGCCACCAAAATAAAAATATGCGTGACCCGGCACCCACGCGGAACAG
TCTGAACGTGCGTAGTACATGTTGCGAGCTAAAGTACCCGGCAGTGAGAC
TGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACCTC
ACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCACCA
GAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCAAA
TCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTAAC
CCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCCTC
AACTCTTTCTGCAGGTATGTCGGTGGAAGTGAGGCGCCTATGTATGTCTC
CTGCGTCTTGTCCAAGTTTAGAAACTGAGTGTATGAGTCTAGACAGCGCG
CTTGTGCGGGGTTATCTTAAGGGCGTCTTTGCCCACTGCCGCATCCCGTC
GTTGAGCTCGACTCCTCTCCCACATTTCCTTTGTCAGGCCAAGATCAACA
ACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGAAA
CCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGGTAGGTAGTATGAGTAGG
ACATGGGGCTGCGGATGGACCACGAGCATGTTACGAATGTGCGGCGGCTC
ATACTCTGTTCGAATTACAAATAACAGGCAAAGTGGAACATTCCCCTTAT
GCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACATCGGT
CCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAACATGAGCGTACAA
GAGGGCAAAAGGACGAGTTGAATAGCCAACAGGAAGTGGACATTGTAGGA
AGTTACACGGGGAAAGTGAGACATGAATGACTGAAGAATGGAGGAAAATC
GAATGAAAACCACGATATGCGATCAATTACAATTCGTCCATTGTAATTTG
TGTCACGCAAGCCGAAATCTCCCTACCCTCAAAAATAATCTCCACGACTC
CCTTTTGTTCGCGT back to topCoding sequence (CDS) from alignment at chr2:959452..961365- >NO02G03580.1 ID=NO02G03580.1|Name=NO02G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at chr2:959452..961365- (Nannochloropsis oceanica) ATGCCCATCATCATGTGCACCAGAAGTAGCGATTTAGTCACCCCCCCCAA ATCTTTCCCCCTTCCCCCCAAATCCCGCAAGATGAACAGCATGAGATATG TCCTGAGCACTGTCCTTGTAACCCTCTTCGTCGCCTCCGACGCTTTTATG GTGCCCAAAACAAGCCGCCCTCAACTCTTTCTGCAGGCCAAGATCAACAA CAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGAAAC CTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGGCAAAGTGGAACATTCCCC TTATGCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACAT CGGTCCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAA back to top
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