NO02G03580, NO02G03580 (gene) Nannochloropsis oceanica

Overview
NameNO02G03580
Unique NameNO02G03580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1914
Alignment locationchr2:959452..961365 -

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Properties
Property NameValue
DescriptionCDGSH iron-sulfur domain-containing protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:959452..961365 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0043231intracellular membrane-bounded organelle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: INTERPRO
TermDefinition
IPR018967FeS-contain_CDGSH-typ
Homology
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_002294522.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED88356.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 104.8 bits (260), Expect = 2.000e-19
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:   58 AKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            A+INNK+DL+SPKV TM ++  GEKKV+CRCW+S TFPLCD AH+ HN+ TGDN+GPLIVS  K
Sbjct:    2 ARINNKIDLDSPKVATMDKICDGEKKVYCRCWKSETFPLCDAAHVAHNKETGDNVGPLIVSVEK 65
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: CBN80293.1 (CDGSH iron sulfur domain-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 104.0 bits (258), Expect = 3.500e-19
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:   59 KINN-KVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            KIN  + +L+ PKVVTM  +  G KKV+CRCW+SGTFPLCDGAH+KHNEATGDN+GPLIVS PK
Sbjct:   37 KINTIEFELDKPKVVTMDSVDAGGKKVYCRCWKSGTFPLCDGAHVKHNEATGDNVGPLIVSGPK 100
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_005830934.1 (hypothetical protein GUITHDRAFT_72700 [Guillardia theta CCMP2712] >EKX43954.1 hypothetical protein GUITHDRAFT_72700 [Guillardia theta CCMP2712])

HSP 1 Score: 101.7 bits (252), Expect = 1.700e-18
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:   59 KINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            KIN+K++L++PKV T   ++PG+K V+CRCW+S TFP CDGAH KHN+ TGDN+GPLIV+ PK
Sbjct:    4 KINHKIELDNPKVATTDTIEPGQKVVYCRCWKSATFPKCDGAHNKHNQETGDNVGPLIVNVPK 66
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: CEM37796.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 99.4 bits (246), Expect = 8.500e-18
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 0 
Query:   59 KINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVS 119
            KIN  VD ESPKVV   ++  G+KKV+CRCW SGTFP+CDG H KHNEATGDN+GPLIVS
Sbjct:   53 KINLSVDPESPKVVHQEKIPTGKKKVYCRCWLSGTFPVCDGTHAKHNEATGDNVGPLIVS 112
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: GAX21812.1 (hypothetical protein FisN_30Hh011 [Fistulifera solaris])

HSP 1 Score: 98.6 bits (244), Expect = 1.500e-17
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 0 
Query:   57 QAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVS 119
            + KIN  +DLESPKV  M EM  G KKVFCRCW SGTFPLCDG H+KHN A GDN+GPLIV+
Sbjct:   42 EGKINLLIDLESPKVANMEEMSSG-KKVFCRCWLSGTFPLCDGTHVKHNAACGDNVGPLIVT 102
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: GAX11636.1 (hypothetical protein FisN_30Lh011 [Fistulifera solaris])

HSP 1 Score: 98.6 bits (244), Expect = 1.500e-17
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 0 
Query:   57 QAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVS 119
            + KIN  +DLESPKV  M EM  G KKVFCRCW SGTFPLCDG H+KHN A GDN+GPLIV+
Sbjct:   42 EGKINLLIDLESPKVANMEEMSSG-KKVFCRCWLSGTFPLCDGTHVKHNAACGDNVGPLIVT 102
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: XP_002176131.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC42882.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 98.2 bits (243), Expect = 1.900e-17
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   63 KVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            K+DL+SPKV TM +++ G KKV+CRCW SGTFPLCDG H KHN+ATGDN+GPLIVS  K
Sbjct:    1 KIDLDSPKVATMDDIEKG-KKVYCRCWLSGTFPLCDGTHQKHNDATGDNVGPLIVSVKK 58
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: OEU06071.1 (iron-sulfur domain-containing NEET-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 96.7 bits (239), Expect = 5.500e-17
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:   58 AKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            +KIN  +DL++ KVV M ++  G+K V+CRCW+SGTFPLCDG H+ HN+ATGDN+GPLIV+  K
Sbjct:   42 SKINTLIDLDAEKVVNMEKLDAGKKAVYCRCWKSGTFPLCDGNHVAHNKATGDNVGPLIVTAAK 105
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: OLQ06663.1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Symbiodinium microadriaticum])

HSP 1 Score: 95.9 bits (237), Expect = 9.400e-17
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0 
Query:   59 KINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDN 112
            KIN K+D ESPKVVT  ++K G+K+V+CRCW SGTFPLCDGAH KHNEATGDN
Sbjct: 1268 KINGKIDPESPKVVTKEDLKEGDKRVYCRCWLSGTFPLCDGAHAKHNEATGDN 1320
[Close]
BLAST of NO02G03580 vs. NCBI_GenBank
Match: KHJ89014.1 (zinc finger CDGSH type [Oesophagostomum dentatum])

HSP 1 Score: 95.5 bits (236), Expect = 1.200e-16
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0 
Query:   55 LCQAKINNKVDLESPKVVTMVEMKP-GEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            LC+A++N KV L + KVV  V+++  GEKK FCRCW+S  FP CDGAH KHN+ TGDN+GPL+V  P+
Sbjct:   40 LCKARVNKKVQLANEKVVDTVDVEDIGEKKAFCRCWKSEKFPYCDGAHTKHNKETGDNVGPLLVKVPE 107
The following BLAST results are available for this feature:
BLAST of NO02G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002294522.12.000e-1968.75predicted protein, partial [Thalassiosira pseudona... [more]
CBN80293.13.500e-1971.88CDGSH iron sulfur domain-containing protein [Ectoc... [more]
XP_005830934.11.700e-1863.49hypothetical protein GUITHDRAFT_72700 [Guillardia ... [more]
CEM37796.18.500e-1871.67unnamed protein product [Vitrella brassicaformis C... [more]
GAX21812.11.500e-1770.97hypothetical protein FisN_30Hh011 [Fistulifera sol... [more]
GAX11636.11.500e-1770.97hypothetical protein FisN_30Lh011 [Fistulifera sol... [more]
XP_002176131.11.900e-1771.19predicted protein, partial [Phaeodactylum tricornu... [more]
OEU06071.15.500e-1760.94iron-sulfur domain-containing NEET-like protein [F... [more]
OLQ06663.19.400e-1775.472,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
KHJ89014.11.200e-1658.82zinc finger CDGSH type [Oesophagostomum dentatum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03580.2NO02G03580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G03580.1NO02G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|147199gene_945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03580.2NO02G03580.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G03580.1NO02G03580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03580 ID=NO02G03580|Name=NO02G03580|organism=Nannochloropsis oceanica|type=gene|length=1914bp
TTAAGGAGATTTGTCGAGGGACTCCATGTACCTTTGGCAAGCACAACAGG
CGAGACTGTGAAGGAGGCATCTCTCCACGGTTTTTGCAATGATTTCTTGT
CGGCGGAGGGGGTCGACCTTGAGACACACGCCATAATTCTCAACGCCCAT
TAGGAAAGAGCCATGTTGTGTTGTGTTTGGCGTGAGTTGTTCAGGAAACA
CAAAAAAAGAGGACTTCTGCGATGGGTTGCTTATTGTCCGCACGAAAATA
TCGTGCCTGGAAAAAAGAGACTCTTTTCGATGCAATTTCAACCCCGAACA
GGAGCCACCAATTTCTTGTGTGACTTGACTTATCTCACTTATCCTCAAGA
TCTACCGAATGCGAACGGTCTCGTTGTCTTTGATATCAGACTGGTCGTGC
TCGTCGAACTCGTGGCCGGCCCACATACCTGAGGGAGAGTCTTGCGAATA
AATTGTGTGGACTCATCGTTCCCAACTATTTATTCTCAATTGACTGTCTT
GCGGACAGAAAATTAACGAGTCAATGGACTGTCTTTTCATGTCGCCACTG
CTGGCAGGGGTGGGCTCAGGCCCGGTATTTCCGGGTACCCGACAGACCTG
GGAACTGGACCCGGGCTAAAGGACGACCCGGATCTGGTTTGACAGCCCGG
GTCCGCCAGGAACCCGGGTACCTGGGTGATCAAGTACTGAAATGCTCCAG
ACGAGGCAGAATGGGAAAGGAGAAGGAAGGGACGAGAAGAAAGGGAGGAT
GAGGGCCGTAGCTTCCCTTTCGAAGCCCTCCATCGTGGGGGGGCCTGGCA
CTCAATCCCTCTTCACACAAAACCCTCCGCCAGGTTGACCCGGGTCGCCT
CACGGCCACCAAAATAAAAATATGCGTGACCCGGCACCCACGCGGAACAG
TCTGAACGTGCGTAGTACATGTTGCGAGCTAAAGTACCCGGCAGTGAGAC
TGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACCTC
ACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCACCA
GAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCAAA
TCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTAAC
CCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCCTC
AACTCTTTCTGCAGGTATGTCGGTGGAAGTGAGGCGCCTATGTATGTCTC
CTGCGTCTTGTCCAAGTTTAGAAACTGAGTGTATGAGTCTAGACAGCGCG
CTTGTGCGGGGTTATCTTAAGGGCGTCTTTGCCCACTGCCGCATCCCGTC
GTTGAGCTCGACTCCTCTCCCACATTTCCTTTGTCAGGCCAAGATCAACA
ACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGAAA
CCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGgtaggtagtatgagtagg
acatggggctgcggatggaccacgagcatgttacgaatgtgcggcggctc
atactctgttcgaattacaaataacagGCAAAGTGGAACATTCCCCTTAT
GCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACATCGGT
CCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAACATGAGCGTACAA
GAGGGCAAAAGGACGAGTTGAATAGCCAACAGGAAGTGGACATTGTAGGA
AGTTACACGGGGAAAGTGAGACATGAATGACTGAAGAATGGAGGAAAATC
GAATGAAAACCACGATATGCGATCAATTACAATTCGTCCATTGTAATTTG
TGTCACGCAAGCCGAAATCTCCCTACCCTCAAAAATAATCTCCACGACTC
CCTTTTGTTCGCGT
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protein sequence of NO02G03580.2

>NO02G03580.2-protein ID=NO02G03580.2-protein|Name=NO02G03580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSVEVRRLCMSPASCPSLETECMSLDSALVRGYLKGVFAHCRIPSLSSTP
LPHFLCQAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGA
HMKHNEATGDNIGPLIVSTPKPSN*
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protein sequence of NO02G03580.1

>NO02G03580.1-protein ID=NO02G03580.1-protein|Name=NO02G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MPIIMCTRSSDLVTPPKSFPLPPKSRKMNSMRYVLSTVLVTLFVASDAFM
VPKTSRPQLFLQAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFP
LCDGAHMKHNEATGDNIGPLIVSTPKPSN*
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Synonyms
Publications