NO02G03580.2, NO02G03580.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03580.2
Unique NameNO02G03580.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1819
Alignment locationchr2:959452..961365 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:959452..961365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03580.2 vs.
Match: XP_002294522.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335]; EED88356.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 104.8 bits (260), Expect = 2.000e-19
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:   58 AKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNIGPLIVSTPK 122
            A+INNK+DL+SPKV TM ++  GEKKV+CRCW+S TFPLCD AH+ HN+ TGDN+GPLIVS  K
Sbjct:    2 ARINNKIDLDSPKVATMDKICDGEKKVYCRCWKSETFPLCDAAHVAHNKETGDNVGPLIVSVEK 65
The following BLAST results are available for this feature:
BLAST of NO02G03580.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002294522.12.000e-1968.75predicted protein, partial [Thalassiosira pseudona... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03580NO02G03580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03580.2NO02G03580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03580.2.cds1NO02G03580.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03580.2.cds2NO02G03580.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03580.2 ID=NO02G03580.2|Name=NO02G03580.2|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp
TTAAGGAGATTTGTCGAGGGACTCCATGTACCTTTGGCAAGCACAACAGG
CGAGACTGTGAAGGAGGCATCTCTCCACGGTTTTTGCAATGATTTCTTGT
CGGCGGAGGGGGTCGACCTTGAGACACACGCCATAATTCTCAACGCCCAT
TAGGAAAGAGCCATGTTGTGTTGTGTTTGGCGTGAGTTGTTCAGGAAACA
CAAAAAAAGAGGACTTCTGCGATGGGTTGCTTATTGTCCGCACGAAAATA
TCGTGCCTGGAAAAAAGAGACTCTTTTCGATGCAATTTCAACCCCGAACA
GGAGCCACCAATTTCTTGTGTGACTTGACTTATCTCACTTATCCTCAAGA
TCTACCGAATGCGAACGGTCTCGTTGTCTTTGATATCAGACTGGTCGTGC
TCGTCGAACTCGTGGCCGGCCCACATACCTGAGGGAGAGTCTTGCGAATA
AATTGTGTGGACTCATCGTTCCCAACTATTTATTCTCAATTGACTGTCTT
GCGGACAGAAAATTAACGAGTCAATGGACTGTCTTTTCATGTCGCCACTG
CTGGCAGGGGTGGGCTCAGGCCCGGTATTTCCGGGTACCCGACAGACCTG
GGAACTGGACCCGGGCTAAAGGACGACCCGGATCTGGTTTGACAGCCCGG
GTCCGCCAGGAACCCGGGTACCTGGGTGATCAAGTACTGAAATGCTCCAG
ACGAGGCAGAATGGGAAAGGAGAAGGAAGGGACGAGAAGAAAGGGAGGAT
GAGGGCCGTAGCTTCCCTTTCGAAGCCCTCCATCGTGGGGGGGCCTGGCA
CTCAATCCCTCTTCACACAAAACCCTCCGCCAGGTTGACCCGGGTCGCCT
CACGGCCACCAAAATAAAAATATGCGTGACCCGGCACCCACGCGGAACAG
TCTGAACGTGCGTAGTACATGTTGCGAGCTAAAGTACCCGGCAGTGAGAC
TGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACCTC
ACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCACCA
GAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCAAA
TCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTAAC
CCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCCTC
AACTCTTTCTGCAGGTATGTCGGTGGAAGTGAGGCGCCTATGTATGTCTC
CTGCGTCTTGTCCAAGTTTAGAAACTGAGTGTATGAGTCTAGACAGCGCG
CTTGTGCGGGGTTATCTTAAGGGCGTCTTTGCCCACTGCCGCATCCCGTC
GTTGAGCTCGACTCCTCTCCCACATTTCCTTTGTCAGGCCAAGATCAACA
ACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGAAA
CCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGGCAAAGTGGAACATTCCC
CTTATGCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACA
TCGGTCCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAACATGAGCG
TACAAGAGGGCAAAAGGACGAGTTGAATAGCCAACAGGAAGTGGACATTG
TAGGAAGTTACACGGGGAAAGTGAGACATGAATGACTGAAGAATGGAGGA
AAATCGAATGAAAACCACGATATGCGATCAATTACAATTCGTCCATTGTA
ATTTGTGTCACGCAAGCCGAAATCTCCCTACCCTCAAAAATAATCTCCAC
GACTCCCTTTTGTTCGCGT
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protein sequence of NO02G03580.2

>NO02G03580.2-protein ID=NO02G03580.2-protein|Name=NO02G03580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSVEVRRLCMSPASCPSLETECMSLDSALVRGYLKGVFAHCRIPSLSSTP
LPHFLCQAKINNKVDLESPKVVTMVEMKPGEKKVFCRCWQSGTFPLCDGA
HMKHNEATGDNIGPLIVSTPKPSN*
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mRNA from alignment at chr2:959452..961365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03580.2 ID=NO02G03580.2|Name=NO02G03580.2|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr2:959452..961365- (Nannochloropsis oceanica)
TTAAGGAGATTTGTCGAGGGACTCCATGTACCTTTGGCAAGCACAACAGG
CGAGACTGTGAAGGAGGCATCTCTCCACGGTTTTTGCAATGATTTCTTGT
CGGCGGAGGGGGTCGACCTTGAGACACACGCCATAATTCTCAACGCCCAT
TAGGAAAGAGCCATGTTGTGTTGTGTTTGGCGTGAGTTGTTCAGGAAACA
CAAAAAAAGAGGACTTCTGCGATGGGTTGCTTATTGTCCGCACGAAAATA
TCGTGCCTGGAAAAAAGAGACTCTTTTCGATGCAATTTCAACCCCGAACA
GGAGCCACCAATTTCTTGTGTGACTTGACTTATCTCACTTATCCTCAAGA
TCTACCGAATGCGAACGGTCTCGTTGTCTTTGATATCAGACTGGTCGTGC
TCGTCGAACTCGTGGCCGGCCCACATACCTGAGGGAGAGTCTTGCGAATA
AATTGTGTGGACTCATCGTTCCCAACTATTTATTCTCAATTGACTGTCTT
GCGGACAGAAAATTAACGAGTCAATGGACTGTCTTTTCATGTCGCCACTG
CTGGCAGGGGTGGGCTCAGGCCCGGTATTTCCGGGTACCCGACAGACCTG
GGAACTGGACCCGGGCTAAAGGACGACCCGGATCTGGTTTGACAGCCCGG
GTCCGCCAGGAACCCGGGTACCTGGGTGATCAAGTACTGAAATGCTCCAG
ACGAGGCAGAATGGGAAAGGAGAAGGAAGGGACGAGAAGAAAGGGAGGAT
GAGGGCCGTAGCTTCCCTTTCGAAGCCCTCCATCGTGGGGGGGCCTGGCA
CTCAATCCCTCTTCACACAAAACCCTCCGCCAGGTTGACCCGGGTCGCCT
CACGGCCACCAAAATAAAAATATGCGTGACCCGGCACCCACGCGGAACAG
TCTGAACGTGCGTAGTACATGTTGCGAGCTAAAGTACCCGGCAGTGAGAC
TGAGCTGACAGTGTAGCTTGTTTTTTTGCCTGTAAAAGTGCCCGGACCTC
ACGGACTTTGTCACCATATCCCGCGTAGATGCCCATCATCATGTGCACCA
GAAGTAGCGATTTAGTCACCCCCCCCAAATCTTTCCCCCTTCCCCCCAAA
TCCCGCAAGATGAACAGCATGAGATATGTCCTGAGCACTGTCCTTGTAAC
CCTCTTCGTCGCCTCCGACGCTTTTATGGTGCCCAAAACAAGCCGCCCTC
AACTCTTTCTGCAGGTATGTCGGTGGAAGTGAGGCGCCTATGTATGTCTC
CTGCGTCTTGTCCAAGTTTAGAAACTGAGTGTATGAGTCTAGACAGCGCG
CTTGTGCGGGGTTATCTTAAGGGCGTCTTTGCCCACTGCCGCATCCCGTC
GTTGAGCTCGACTCCTCTCCCACATTTCCTTTGTCAGGCCAAGATCAACA
ACAAGGTCGACTTGGAGAGTCCGAAGGTGGTGACCATGGTAGAGATGAAA
CCTGGAGAGAAGAAGGTGTTCTGCCGCTGCTGGTAGGTAGTATGAGTAGG
ACATGGGGCTGCGGATGGACCACGAGCATGTTACGAATGTGCGGCGGCTC
ATACTCTGTTCGAATTACAAATAACAGGCAAAGTGGAACATTCCCCTTAT
GCGACGGCGCGCACATGAAGCACAATGAAGCTACGGGGGACAACATCGGT
CCTCTCATTGTTTCCACGCCGAAGCCATCCAACTAAACATGAGCGTACAA
GAGGGCAAAAGGACGAGTTGAATAGCCAACAGGAAGTGGACATTGTAGGA
AGTTACACGGGGAAAGTGAGACATGAATGACTGAAGAATGGAGGAAAATC
GAATGAAAACCACGATATGCGATCAATTACAATTCGTCCATTGTAATTTG
TGTCACGCAAGCCGAAATCTCCCTACCCTCAAAAATAATCTCCACGACTC
CCTTTTGTTCGCGT
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Coding sequence (CDS) from alignment at chr2:959452..961365-

>NO02G03580.2 ID=NO02G03580.2|Name=NO02G03580.2|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr2:959452..961365- (Nannochloropsis oceanica)
ATGTCGGTGGAAGTGAGGCGCCTATGTATGTCTCCTGCGTCTTGTCCAAG
TTTAGAAACTGAGTGTATGAGTCTAGACAGCGCGCTTGTGCGGGGTTATC
TTAAGGGCGTCTTTGCCCACTGCCGCATCCCGTCGTTGAGCTCGACTCCT
CTCCCACATTTCCTTTGTCAGGCCAAGATCAACAACAAGGTCGACTTGGA
GAGTCCGAAGGTGGTGACCATGGTAGAGATGAAACCTGGAGAGAAGAAGG
TGTTCTGCCGCTGCTGGCAAAGTGGAACATTCCCCTTATGCGACGGCGCG
CACATGAAGCACAATGAAGCTACGGGGGACAACATCGGTCCTCTCATTGT
TTCCACGCCGAAGCCATCCAACTAA
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Synonyms
Publications