NO02G03480, NO02G03480 (gene) Nannochloropsis oceanica

Overview
NameNO02G03480
Unique NameNO02G03480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr2:935420..936754 +

Link to JBrowse

Properties
Property NameValue
DescriptionSmall-conductance mechanosensitive channel
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:935420..936754 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011066MscC_channel_C
IPR010920LSM_dom
IPR006685MscS_channel
Homology
BLAST of NO02G03480 vs. NCBI_GenBank
Match: EWM30349.1 (small-conductance mechanosensitive channel [Nannochloropsis gaditana])

HSP 1 Score: 786.9 bits (2031), Expect = 3.200e-224
Identity = 389/430 (90.47%), Postives = 408/430 (94.88%), Query Frame = 0
Query:    1 MLFGWLFKPKAAPPVARKGPLTVLILDPVRRAIELFPNTKAVVEQVWNVLPLALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPYEDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASLLYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVPKELGQSLITGVVDYQNELEQVA 431
            M   W   PK A PV RKG L+ L+LDPVRRA+ELFPN+K V++QVW +LPLALRALINP DLLLF+TTRLLYRKACRALHAFH FLWKR GI+DEPR YEDSVLGFMEPKLGTLTSFIGVTY+INVVLSLL+DIGWRVRADS RLMASLLYIAYGAYFVNEVKK+YLT+WVPSLQEDRRRSYIIDRSSSVVLWILA FSCIEC+S+FLK+PLSSTLAFGG GGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFE SF+LR+QDFETLPE+ILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLV KELGQSLITGVVDYQNELEQVA
Sbjct:  143 MRIDWFSGPKIAEPVPRKGALSSLVLDPVRRAVELFPNSKGVIDQVWTMLPLALRALINPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVSKELGQSLITGVVDYQNELEQVA 572          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: CBJ28084.1 (Small Conductance Mechanosensitive Ion channel [Ectocarpus siliculosus])

HSP 1 Score: 355.9 bits (912), Expect = 1.800e-94
Identity = 185/401 (46.13%), Postives = 260/401 (64.84%), Query Frame = 0
Query:   45 QVWNVLPL---------ALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPYEDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASLLYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL-VPKELGQSLITGVVDYQNELEQVAAGQGG 436
            Q+W++  L          L  ++ P+ L LFL  +++YR+  R L+     +W+     D P+PYE SVLGF+EP+L TL+  + V Y +   + +L+  GW       ++++ ++Y  Y  YFV+E K+ +L  W+PSL+ D+R+ +I +RS SV+ W +   +  E +S++L++P++STLAFGG GGLA GLA KDV+SNFFGG+MLL  EPF PGDMV+F   G   EG+VERVG+YQTRLRGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LRY D   + EI+  IK AL+ +P +D+LSPFRVH   F    L +   CYFATKS DE+LYLQQ+AL+E+TRVV            ++D+  P  +G+  + G++   N  +     Q G
Sbjct:   10 QLWSIAGLKAAGARFWGPLTNVVTPQKLFLFLLFQIVYRRLLRLLYRLQVQVWRLVRKHD-PQPYEQSVLGFVEPRLRTLSRTLVVAYALKSGVRVLIASGWNANPQLAKVLSDVVYCWYAGYFVDEAKRFFLPVWIPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEILQGIKTALKDVPNIDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLEVTRVVQGASATMT-SVLYVDMNNPAPIGKVPLAGMI---NSAQNKGVAQSG 405          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: WP_020583552.1 (hypothetical protein [Endozoicomonas elysicola])

HSP 1 Score: 149.1 bits (375), Expect = 3.300e-32
Identity = 92/261 (35.25%), Postives = 139/261 (53.26%), Query Frame = 0
Query:  146 LMASLLYIAYGAYFVNEV--KKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHL 405
            L+  +L + Y A+F+ EV    + L +        R    +I RS  +++ I    S    ++      LS+ LAFGG GG+  GLA+KD ++NFFGG+ML+   PFT GD +    R    EG VE+VG+  T++R  D RP YVPNS+F   +V N  R+ +RR   +F LRY+DFE +P I+  I + L+++ +VD   P    F ++    L      +        +L +Q+  L+ I + VTE G  FAYPT  +
Sbjct:   83 LIQKILLVVYPAWFIWEVSLNMEGLLNTADGRWAGRLSYSVIARSIQLLIVITTLLS----LAQVFGYRLSTLLAFGGIGGIILGLAAKDWLANFFGGLMLMLDRPFTEGDWIRSPDRA--IEGHVEKVGWRLTKIRTFDRRPIYVPNSIFTGIVVENATRMRNRRMVENFYLRYEDFEKIPNILRRIDELLQLVSEVDNKEPHYAVFIRYDDSALLCQVRAHITRTDRVGFLKVQESILLLIAKAVTEAGASFAYPTRRI 337          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: WP_093272972.1 (mechanosensitive ion channel family protein [Vibrio xiamenensis] >SDH18729.1 MscS family membrane protein [Vibrio xiamenensis])

HSP 1 Score: 147.9 bits (372), Expect = 7.500e-32
Identity = 99/288 (34.38%), Postives = 148/288 (51.39%), Query Frame = 0
Query:  127 VVLSLLVDIGWRVRADSGRLMASLLYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVPKELGQS 415
            + L  L++  ++   D    +  LL IA   +FV  +    + S V  + + +R    +   S V+     T + +  + SF  + LS  L FGG GGL  GLA+KD++SNFFGG+M+ F  PF  GD V    R  + EG VER+G+  T +R  D RP YVPNSVF + +V N  R+ +RR   +  +RY D E L +I+ EIKK L+  P +D      V+F  FG   L +    +  T +   Y  ++Q  L++I  ++       AYPT  + L P+  G S
Sbjct:   78 ISLGFLLEGHFKTTLDWLSTLKLLLVIAVCVWFVLRLVTN-VESHV--IAQQKRDETTVQAVSKVIRLFFVTIAVLTIMQSF-GLSLSGLLTFGGVGGLIVGLAAKDLLSNFFGGMMIYFDRPFKVGDWVRSPDR--NIEGTVERIGWRMTIIRTFDKRPLYVPNSVFSNIVVENPSRMLNRRIYETIGIRYDDSEVLSDIVHEIKKMLKNHPDIDTKQTLIVNFNGFGPSSLDMMVYTFTKTVNWIRYHEVKQDVLIKIMDIINAHNASIAYPTQTIKLAPEHAGMS 359          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: XP_005538462.1 (similar to small conductance mechanosensitive ion channel [Cyanidioschyzon merolae strain 10D] >BAM82426.1 similar to small conductance mechanosensitive ion channel [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 146.7 bits (369), Expect = 1.700e-31
Identity = 84/242 (34.71%), Postives = 132/242 (54.55%), Query Frame = 0
Query:  170 SWVPSLQEDRRRS--YIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVL-SPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVP 409
            +W    +ED   S  +++ R  +V+++ +A    +E       +PL S LAFGG GGLA GLA++++  NF  G+ML    PF PG+ V   T G    G+V ++GFY+T L G D RP ++PN+  ++  +TN  RIT+RR    F LRYQD + +  I+  +++ L  +P++        V FT+F  Y L +  SC         +L +QQ  L+E+ R+V      FA PT  ++ +P
Sbjct:  224 NWFLYEREDLSLSQIFVLGRLGTVLIYAVAFLVFVETTG----LPLRSILAFGGIGGLAVGLATQELAKNFISGIMLALGAPFAPGESVQLNTLGV--SGQVRQIGFYKTELIGADGRPIWIPNAQLLNERLTNNSRITNRRINLRFGLRYQDIDKIGRIVERVREMLAEVPEIAAYRESISVFFTEFAEYSLPIQLSCIVNVTDGRRFLEIQQQVLIELNRIVKSELADFALPTRAIEYLP 459          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: WP_051230095.1 (mechanosensitive ion channel family protein [Haliea salexigens])

HSP 1 Score: 146.7 bits (369), Expect = 1.700e-31
Identity = 86/226 (38.05%), Postives = 125/226 (55.31%), Query Frame = 0
Query:  191 VVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYP--TTHLDLVPKELGQS 415
            V+LWILA    ++ V     V +S  LAFGG GG+A G A+KD+++NFFGG+ +    PFTPGD +    R    EG VE +G+  TR+R  D RP YVPN+VF    V N  R+ +RR   +  LRYQD   L +I+ ++++ L   P +D+     V+F  FG   L      +  T    EY  ++Q  L++  R++ + G   A+P  T HLD  P EL ++
Sbjct:  146 VILWILAGLMALQSVG----VSISGLLAFGGIGGIAVGFAAKDLMANFFGGMSIYLDRPFTPGDWIRSPDR--EIEGTVEDIGWRLTRIRTFDQRPLYVPNAVFTQISVENPSRMFNRRIYETIGLRYQDSGKLADIVSDVRQMLENHPDIDLNRTLIVNFVSFGPSSLDFFIYTFTRTTVWVEYHAIKQDVLLQALRIIHDHGADVAFPTRTLHLDSAPPELARA 365          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: WP_105729365.1 (mechanosensitive ion channel family protein [Malikia spinosa] >PRD69075.1 mechanosensitive ion channel protein MscS [Malikia spinosa])

HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31
Identity = 91/282 (32.27%), Postives = 142/282 (50.35%), Query Frame = 0
Query:  125 INVVLSLLVDIGWRVRADSGRLMASLLYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 407
            I++  +LL  +G     D    +  +++I  GA F+  +      + +   +  +       ++ + +L +    + +      L   +S  LAFGG GG+A G ASKD++SNFFGG+ML   +PF  GD +    R    EG VE +G+  TR+R  D RP Y+PNS+F   +V N  R+T+RR   +  +RY+D E +  I   I++ LR  P++D      VHFT +G   L     C   T    +Y  +++  L+ I  +V E G  FAYPT  L L
Sbjct:   74 ISIAATLLKQVGPNAFLDLLPELRRVVFIFIGALFLTRLISHLEVNLLDPARVSKPMDQTTAKAVAKLLRLSVIITAVLVALQTLGYSVSGVLAFGGIGGVAVGFASKDLLSNFFGGLMLYLDKPFKVGDWIRSPDRA--IEGTVEDIGWRLTRIRTFDKRPLYIPNSMFASIVVENPSRMTNRRISENLGIRYEDGERMAPICSAIRQMLREHPEIDQAQTQIVHFTSYGQSHLEFMVYCLTRTTEWVKYHAVKEDVLLRIMAIVREHGAEFAYPTQTLHL 353          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: SMA49970.1 (Low conductance mechanosensitive channel YnaI [Parendozoicomonas haliclonae])

HSP 1 Score: 146.0 bits (367), Expect = 2.800e-31
Identity = 90/245 (36.73%), Postives = 134/245 (54.69%), Query Frame = 0
Query:  166 QYLTSWVPSLQEDRRRSYIIDRSS-SVVLWILATFSCIECVSSFLK---VPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 407
            +YL     S +E  R    +DRSS  +++ +L     I    + L+   V +S  LAFGG GGLA GLA+KD+++N FGG+ L    PF  GD V+   +G   EG VE +G+ QTR+RG D  P YVPN++F +  V N  R+ +RR +    +RY+DF+ L  +   I+  L    ++D +     HFT +G   L++    Y  T   D Y+ L+   L+ I +++ E G  FA+PT  LDL
Sbjct:  112 RYLKMVRDSFEETERAQLKMDRSSVELMIKLLQLGISIATALTLLQNTGVSISGLLAFGGVGGLAVGLAAKDMLANLFGGLTLYMDRPFVVGDKVNLKEKGV--EGFVEHIGWRQTRIRGYDRTPIYVPNALFTNIAVINPSRMQNRRVDMYLGIRYKDFDRLEAVTTAIRNYLSGHEQLDHIRGCLAHFTDYGDSSLNIRIRFYTLTTLWDNYMNLRHEILIHIGQIIHEHGADFAFPTRTLDL 354          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: WP_087112417.1 (mechanosensitive ion channel family protein [Parendozoicomonas haliclonae])

HSP 1 Score: 146.0 bits (367), Expect = 2.800e-31
Identity = 90/245 (36.73%), Postives = 134/245 (54.69%), Query Frame = 0
Query:  166 QYLTSWVPSLQEDRRRSYIIDRSS-SVVLWILATFSCIECVSSFLK---VPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 407
            +YL     S +E  R    +DRSS  +++ +L     I    + L+   V +S  LAFGG GGLA GLA+KD+++N FGG+ L    PF  GD V+   +G   EG VE +G+ QTR+RG D  P YVPN++F +  V N  R+ +RR +    +RY+DF+ L  +   I+  L    ++D +     HFT +G   L++    Y  T   D Y+ L+   L+ I +++ E G  FA+PT  LDL
Sbjct:  122 RYLKMVRDSFEETERAQLKMDRSSVELMIKLLQLGISIATALTLLQNTGVSISGLLAFGGVGGLAVGLAAKDMLANLFGGLTLYMDRPFVVGDKVNLKEKGV--EGFVEHIGWRQTRIRGYDRTPIYVPNALFTNIAVINPSRMQNRRVDMYLGIRYKDFDRLEAVTTAIRNYLSGHEQLDHIRGCLAHFTDYGDSSLNIRIRFYTLTTLWDNYMNLRHEILIHIGQIIHEHGADFAFPTRTLDL 364          
BLAST of NO02G03480 vs. NCBI_GenBank
Match: KEQ15053.1 (mechanosensitive ion channel protein MscS [Endozoicomonas numazuensis])

HSP 1 Score: 145.2 bits (365), Expect = 4.800e-31
Identity = 100/325 (30.77%), Postives = 167/325 (51.38%), Query Frame = 0
Query:   92 GILDEPRPYEDSVLGFMEPKLGTLTSFIGVTYIINVVL----SLLVDIGWRVRADSGRLMASLLYIAYG-AYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVPKEL 412
            G+     P++D+V+  +   +  L   IGV + ++VV     S+L+D        + R +  +  + +    F+ ++++ +L    P+L  ++        +   ++ I+   +CI  V   L   +S  LAFGG GGLA G A+KD+++NFFGG+M+   +PF  GD +   +   + EG VE +G+ QTR+R  D RP YVPN+ F +  V N  R+ +RR + +  +RYQD   L  II EIK+ L    ++       V+F  FG+  L     C+  T    EY  ++Q  L++I  ++       A+PT  LDL P+E+
Sbjct:   45 GVRATRTPWDDAVIRALRKPVTLLIWIIGVCWSVDVVSKATDSVLID-----GLSNLRDVIIITLVGWSIVRFIRQIERNFLN---PTLTGNKPNDPTTVVAIGRLIRIVVIITCILVVLQSLGYSISGLLAFGGVGGLAVGFAAKDMLANFFGGLMIYLDKPFRVGDWI--RSPDQNIEGTVEYIGWRQTRIRTFDKRPLYVPNATFTNISVENPSRMENRRIKETIGIRYQDGNKLEAIIAEIKQYLHDNEEITKDKILMVNFNSFGASSLDFFIYCFTRTTDWAEYHRVKQNVLVKIMNIIHSHDADIAFPTQTLDL-PEEM 358          
The following BLAST results are available for this feature:
BLAST of NO02G03480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30349.13.200e-22490.47small-conductance mechanosensitive channel [Nannoc... [more]
CBJ28084.11.800e-9446.13Small Conductance Mechanosensitive Ion channel [Ec... [more]
WP_020583552.13.300e-3235.25hypothetical protein [Endozoicomonas elysicola][more]
WP_093272972.17.500e-3234.38mechanosensitive ion channel family protein [Vibri... [more]
XP_005538462.11.700e-3134.71similar to small conductance mechanosensitive ion ... [more]
WP_051230095.11.700e-3138.05mechanosensitive ion channel family protein [Halie... [more]
WP_105729365.12.200e-3132.27mechanosensitive ion channel family protein [Malik... [more]
SMA49970.12.800e-3136.73Low conductance mechanosensitive channel YnaI [Par... [more]
WP_087112417.12.800e-3136.73mechanosensitive ion channel family protein [Paren... [more]
KEQ15053.14.800e-3130.77mechanosensitive ion channel protein MscS [Endozoi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007003NSK007003Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03480.1NO02G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653123gene_937Nannochloropsis oceanica (N. oceanica CCMP1779)gene
MscSgene351Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03480.1NO02G03480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03480 ID=NO02G03480|Name=NO02G03480|organism=Nannochloropsis oceanica|type=gene|length=1335bp
ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGGTCAGCAACTTCTTCGGGGGGGTCATGCTTTTGTTCACTGAGCCGTTC
ACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGG
AAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATA
CGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACA
AACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACG
CTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGG
CCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCAT
TTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTT
TGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGA
TGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCC
ACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCAC
TGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAG
GAGGGGGGGGGGGGCAGGAGGAAATAACTCAATGA
back to top

protein sequence of NO02G03480.1

>NO02G03480.1-protein ID=NO02G03480.1-protein|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MLFGWLFKPKAAPPVARKGPLTVLILDPVRRAIELFPNTKAVVEQVWNVL
PLALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPY
EDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASL
LYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFS
CIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPF
TPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVT
NMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVH
FTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYP
TTHLDLVPKELGQSLITGVVDYQNELEQVAAGQGGGGGQEEITQ*
back to top
Synonyms
Publications