NO02G03480.1, NO02G03480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03480.1
Unique NameNO02G03480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr2:935420..936754 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:935420..936754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03480.1 vs.
Match: EWM30349.1 (small-conductance mechanosensitive channel [Nannochloropsis gaditana])

HSP 1 Score: 795.0 bits (2052), Expect = 1.200e-226
Identity = 394/437 (90.16%), Postives = 413/437 (94.51%), Query Frame = 0 
Query:    1 MLFGWLFKPKAAPPVARKGPLTVLILDPVRRAIELFPNTKAVVEQVWNVLPLALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPYEDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASLLYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFSCIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVPKELGQSLITGVVDYQNELEQVAAGQGGGG 438
            M   W   PK A PV RKG L+ L+LDPVRRA+ELFPN+K V++QVW +LPLALRALINP DLLLF+TTRLLYRKACRALHAFH FLWKR GI+DEPR YEDSVLGFMEPKLGTLTSFIGVTY+INVVLSLL+DIGWRVRADS RLMASLLYIAYGAYFVNEVKK+YLT+WVPSLQEDRRRSYIIDRSSSVVLWILA FSCIEC+S+FLK+PLSSTLAFGG GGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFE SF+LR+QDFETLPE+ILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLV KELGQSLITGVVDYQNELEQVAA  GGGG
Sbjct:  143 MRIDWFSGPKIAEPVPRKGALSSLVLDPVRRAVELFPNSKGVIDQVWTMLPLALRALINPSDLLLFVTTRLLYRKACRALHAFHHFLWKRAGIMDEPRVYEDSVLGFMEPKLGTLTSFIGVTYVINVVLSLLIDIGWRVRADSARLMASLLYIAYGAYFVNEVKKEYLTTWVPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVSKELGQSLITGVVDYQNELEQVAASGGGGG 579
The following BLAST results are available for this feature:
BLAST of NO02G03480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30349.11.200e-22690.16small-conductance mechanosensitive channel [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03480NO02G03480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03480.1NO02G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03480.1.cds1NO02G03480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03480.1 ID=NO02G03480.1|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGGTCAGCAACTTCTTCGGGGGGGTCATGCTTTTGTTCACTGAGCCGTTC
ACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGG
AAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATA
CGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACA
AACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACG
CTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGG
CCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCAT
TTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTT
TGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGA
TGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCC
ACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCAC
TGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAG
GAGGGGGGGGGGGGCAGGAGGAAATAACTCAATGA
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protein sequence of NO02G03480.1

>NO02G03480.1-protein ID=NO02G03480.1-protein|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MLFGWLFKPKAAPPVARKGPLTVLILDPVRRAIELFPNTKAVVEQVWNVL
PLALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPY
EDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASL
LYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFS
CIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVVSNFFGGVMLLFTEPF
TPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVT
NMDRITHRRFETSFTLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVH
FTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYP
TTHLDLVPKELGQSLITGVVDYQNELEQVAAGQGGGGGQEEITQ*
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mRNA from alignment at chr2:935420..936754+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03480.1 ID=NO02G03480.1|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at chr2:935420..936754+ (Nannochloropsis oceanica)
ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGGTCAGCAACTTCTTCGGGGGGGTCATGCTTTTGTTCACTGAGCCGTTC
ACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGG
AAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATA
CGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACA
AACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACG
CTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGG
CCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCAT
TTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTT
TGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGA
TGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCC
ACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCAC
TGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAG
GAGGGGGGGGGGGGCAGGAGGAAATAACTCAATGA
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Coding sequence (CDS) from alignment at chr2:935420..936754+

>NO02G03480.1 ID=NO02G03480.1|Name=NO02G03480.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr2:935420..936754+ (Nannochloropsis oceanica)
ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGGTCAGCAACTTCTTCGGGGGGGTCATGCTTTTGTTCACTGAGCCGTTC
ACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGG
AAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATA
CGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACA
AACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACG
CTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGG
CCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCAT
TTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTT
TGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGA
TGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCC
ACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCAC
TGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAG
GAGGGGGGGGGGGGCAGGAGGAAATAACTCAATGA
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Synonyms
Publications