NO02G03350, NO02G03350 (gene) Nannochloropsis oceanica

Overview
NameNO02G03350
Unique NameNO02G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3324
Alignment locationchr2:898946..902269 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:898946..902269 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
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BLAST of NO02G03350 vs. NCBI_GenBank
Match: XP_009036337.1 (expressed protein [Aureococcus anophagefferens] >EGB09230.1 expressed protein [Aureococcus anophagefferens])

HSP 1 Score: 98.6 bits (244), Expect = 9.300e-17
Identity = 61/160 (38.12%), Postives = 92/160 (57.50%), Query Frame = 0 
Query:  403 LSLYVPIEQVGLVIGKKGAKIKYIQDASRARVSVEPTEDVTDSAWSLVSVRGKPSGCFTAARMIAGLVEELDDCIAQFPLFKSRLVQV--------IGKSSANLRRISADTNVRIYIP------------GWKDKESNYVQLEGEVDAVLKAVVEVVDAA 543
            L++++P+EQVG+VIG+ GA I  IQ +S +R++V P  D   S W+ V ++G P G F AA++++ LVEELDD +A+F L      ++        +G  S   RRISA+  VR+ +P              KD E+  V LEG +D V +A+  V+ AA
Sbjct:    8 LTIWIPVEQVGIVIGRSGATISRIQSSSSSRLNVVP--DPEASPWAPVYIKGAPDGVFMAAKLVSDLVEELDDAVAEFHLSAKGRDKLRAGGPDDGLGNLSPEARRISAELGVRMRVPPAAGKGRGDEHRPSKDGEAEPVTLEGALDRVKRALQCVIAAA 165
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BLAST of NO02G03350 vs. NCBI_GenBank
Match: GAX20552.1 (hypothetical protein FisN_3Hh598 [Fistulifera solaris])

HSP 1 Score: 73.6 bits (179), Expect = 3.200e-9
Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = 0 
Query:  402 TLSLYVPIEQVGLVIGKKGAKIKYIQDASR---------ARVSVEPTE-------DVTDSAWSLVSVRGKPSGCFTAARMIAGLVE-----ELDDCIAQFPLFKSRLVQVIGKSSANLRRISADTNVRIYIPGWKDKESNYVQLEG---EVDAVLKAVVEVVDA 542
            T++LY+P   VG VIG++G  I  +Q  +           R+SV   E       D +D  W+ V V+  P   ++A   I  LVE     E +D I   PL +++   V+GK    +  +SAD  VRI +P  K+   + VQLEG    V A   A+++V+ A
Sbjct:   11 TVTLYIPTSAVGAVIGRRGQTIAQVQKTAAQASSNPKVPVRISVREPETPTYTPLDASDELWTPVVVKADPLAAWSACEQIQALVEAGGFVEHEDIIVDIPLHRNKHATVVGKRGWTVATLSADHAVRILVP-HKELRHDIVQLEGPFSNVRACFAALLQVLVA 173
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BLAST of NO02G03350 vs. NCBI_GenBank
Match: GAX10380.1 (hypothetical protein FisN_3Lh598 [Fistulifera solaris])

HSP 1 Score: 71.2 bits (173), Expect = 1.600e-8
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 0 
Query:  402 TLSLYVPIEQVGLVIGKKGAKIKYIQDASR---------ARVSVEPTE-------DVTDSAWSLVSVRGKPSGCFTAARMIAGLVEEL------DDCIAQFPLFKSRLVQVIGKSSANLRRISADTNVRIYIPGWKDKESNYVQLEG---EVDAVLKAVVEVVDA 542
            T++LY+P   VG VIG++G  I  +Q  +           R+SV   E       D +D  W+ V V+  P   ++A   I  LV E       +D I   PL +++   V+GK    +  +SAD  VRI +P  K+   + VQLEG    V A   A+++V+ A
Sbjct:   11 TVTLYIPTSAVGAVIGRRGQTIAQVQKTAAQASSNPKVPVRISVREPETPTYTPLDASDELWTPVVVKADPLAAWSACEQIQALVVEAGGFVEHEDIIVDIPLHRNKHATVVGKRGWTVATLSADHAVRILVP-HKELRHDIVQLEGPFSNVRACFAALLQVLVA 174
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BLAST of NO02G03350 vs. NCBI_GenBank
Match: EGW01763.1 (Insulin-like growth factor 2 mRNA-binding protein 1 [Cricetulus griseus])

HSP 1 Score: 66.2 bits (160), Expect = 5.100e-7
Identity = 52/209 (24.88%), Postives = 98/209 (46.89%), Query Frame = 0 
Query:  342 IRRQYSPSKAMASQADWRGGHGHVHGRESRGRGTPLPNGAQSKLSLDFFRSADLHLRDSCTLSLYVPIEQVGLVIGKKGAKIKYIQDASRARVSVEPTEDVTDSAWSLVSVRGKPSGCFTAARMIAGLVEE-------LDDCIAQFPLFKSRLVQVIGKSSANLRRISADTNVRIYIPGWKD----KESNYVQLEGEVDAVLKAVVEVV 540
            ++  Y P + +A Q    G  G    R    +G+P+  GA +K      +  D+ LR      L VP + VG +IGK+GA I+ I   +++++ V   E+   +A   +SV   P GC +A +MI  ++ +        D+   +     + + ++IGK   NL+++  DT  +I I   +D         + ++G ++   +A  E++
Sbjct:  149 LKVSYIPDEQIA-QGPENGRRGGFGSRGQPRQGSPVAAGAPAKQ-----QQVDIPLR------LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN-AGAAEKAISVHSTPEGCSSACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIM 344
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BLAST of NO02G03350 vs. NCBI_GenBank
Match: XP_015293706.1 (PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1 isoform X3 [Macaca fascicularis])

HSP 1 Score: 66.2 bits (160), Expect = 5.100e-7
Identity = 52/209 (24.88%), Postives = 98/209 (46.89%), Query Frame = 0 
Query:  342 IRRQYSPSKAMASQADWRGGHGHVHGRESRGRGTPLPNGAQSKLSLDFFRSADLHLRDSCTLSLYVPIEQVGLVIGKKGAKIKYIQDASRARVSVEPTEDVTDSAWSLVSVRGKPSGCFTAARMIAGLVEE-------LDDCIAQFPLFKSRLVQVIGKSSANLRRISADTNVRIYIPGWKD----KESNYVQLEGEVDAVLKAVVEVV 540
            ++  Y P + +A Q    G  G    R    +G+P+  GA +K      +  D+ LR      L VP + VG +IGK+GA I+ I   +++++ V   E+   +A   +SV   P GC +A +MI  ++ +        D+   +     + + ++IGK   NL+++  DT  +I I   +D         + ++G ++   +A  E++
Sbjct:  149 LKVSYIPDEQIA-QGPENGRRGGFGSRGQPRQGSPVAAGAPAKQ-----QQVDIPLR------LLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN-AGAAEKAISVHSTPEGCSSACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIM 344
The following BLAST results are available for this feature:
BLAST of NO02G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_009036337.19.300e-1738.13expressed protein [Aureococcus anophagefferens] >E... [more]
GAX20552.13.200e-932.32hypothetical protein FisN_3Hh598 [Fistulifera sola... [more]
GAX10380.11.600e-831.52hypothetical protein FisN_3Lh598 [Fistulifera sola... [more]
EGW01763.15.100e-724.88Insulin-like growth factor 2 mRNA-binding protein ... [more]
XP_015293706.15.100e-724.88PREDICTED: insulin-like growth factor 2 mRNA-bindi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03350.1NO02G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574664gene_922Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03350.1NO02G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03350 ID=NO02G03350|Name=NO02G03350|organism=Nannochloropsis oceanica|type=gene|length=3324bp
ATGAGGTGGCCACCAGCTGCAGGAGGAGGAGGAGGAGGGGGAAGGGATAG
CAGGATGGATACAGGAGGGGATCCTGGAAGGgtaggagtgggaggagtcg
gggcggccggagcggcaacaggaggaggagagggaatgagaggaatcccc
actatactctctttacccagagaacaggcagcacgagcactggcaaccat
tggtagaattcgtgcggcacttgctggaggaatggagaagggaaagagaa
agatagtgagggcgcgccgacgagggggaagagGGGGAGGTGAGGGAGGT
GGAGGAGGAGGTGGTGGAGGAGGAGGAGGGGAAGGAGGAGGTGGTGGAGG
AGGAGGAGGAGGGGAAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGGGGGGAGGAGCAGGAGGTTGAGAAGGAGGACGAG
GAGGAGGGGAGGACGAGGAGGAGGACGAGAAGGAGGAGGGAAAGGAGGAG
GAGGAGGAGAGGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGGGAAGGA
GGGGGAGGGGAAGGAGGAGGAGGAGGGGGAGGAAGGGGAGGGGGAGGAAG
AAGAGGGAAAAGAACCCGGGCTGCGGAAGCAGCAGCAGCCGCCCAGAGGC
GGCTGACCATACAGATGGCACTTGCTGAAGCACGAGCCCGGGCAGCTGCA
GGAGGAGGAGGAGGAGGGGGAAGGGATAGCAGGATGGATACAGGAGGGGA
TCCTGGAAGGgtaggagtgggaggagtcggggcggccggagcggcaacag
gaggaggaggagagggaatgagaggaatccccactatactctctttaccc
agagaacaggcagcacgagcactggcaaccattggtagaattcgtgcggc
acttgctggaggaatggagaagggaaagagaaagatagtgagggcgcgcc
gacgagggggaggagggggaggtgaagGAGGTGGAGGAGGAGGTGGTGGA
GGAGGAGGAGGAGGGGAAGGAGGAGGAGGGGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGACGAGGAGGAG
GACGAGAAGGAGGACGAGGAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGA
GGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGCGGAGGAGGAGGAGGGGG
TGGAGGCGGAGGAATTAGAGGAGAAGGAGGCGGAGAAGAACGAGGCGGAG
GCGGAGGAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGCGGGCCATC
CGAGGACTGTATTGATGTAACACCTGTGAACAGTTCGTGTCTCGGGACGG
CAATGGGGCACGTAATATCCTACTGGTGTACAGGAGAATGGTCCGTGGAG
AAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCGCGGCAAGATgtgcgg
acactctatgtgtagccttcccgctgacctcctcttttatcttcctcccc
cttctcctcctggccctgtgtgggccgtccggggactttgccaggtcgaa
aaacctatcaaagtcgctagaaaaactcggacgaggaataagggatgaca
acaatttcttgttggaaggctccccctcgtatgcaagtcctcgaagacgt
caggttgcatgcgatagttctagagagatgtaggaacgctcaaaagaact
acgtcgtctgttttttttcgttttttcgtttttcgtttattaatatatta
ttattggtttatatatttttttgtctttccaaccaatctacacagCAGGC
GGCAGTATAGCCCTAGCAAAGCCATGGCATCTCAGGCGGACTGGCGAGGC
GGTCACGGTCACGTTCACGGTCGCGAAAGTCGTGGACGAGGCACTCCTTT
GCCCAACGGCGCACAAAGCAAACTATCTCTCGACTTCTTCCGATCGGCCG
ACCTGCACCTCAGGGACAGCTGCACGCTATCGTTGTATGTACCCATTGAG
CAGGTGGGTTTAGTGATTGGGAAGAAGGGGGCAAAGATCAAATACATTCA
AGACGCCAGCAGGGCCCGCGTGAGCGTGGAGCCAACGGAGGACGTCACCG
ACTCAGCCTGGTCTCTCGTCAGTGTCCGAGGCAAACCCTCGGGGTGCTTC
ACGGCGGCCCGCATGATCGCGGGACTCGTGGAAGAGCTAGACGATTGCAT
CGCCCAGTTTCCCCTGTTTAAAAGCCGTCTGGTCCAAGTCATCGGGAAGA
GCAGCGCCAATCTACGTCGCATAAGCGCGGACACAAACGTGCGCATTTAC
ATACCGGGTTGGAAGGACAAAGAAAGCAATTACGTGCAGCTGGAAGGCGA
GGTTGACGCCGTTTTAAAAGCAGTGGTGGAGGTGGTTGATGCGGCATATA
GTGGAGGAGGATATCGGAGCAGCAGCAATGCGGGCGGAGACAGAGAAGGC
GAGTCTGATGGCCAAGTGGCCATGGTAGATGAAGCAACGACACCGATTGC
TGCGGCTTACCCAATCACTAGTAAAGGGGCACCAACCTCAATTATAGAGG
AGATAATTCCTGTGTCTATTAGTCAACTTGATATTTTGACGAAAGGCAGC
ACCAGTGCTGCAATTGTTTTGATAAGTAAACACACAGGTACGCGGATCAA
GAAGGAATCCAAGCCGCGGGAAAAGGAGAACGGCACGGTGCCAGAGGCTG
AGGAACAAGTATTTATGGACAAGTCGCAACCCAAGGACAAAGAGGCGGAA
GAAGGGGGGTACGAGGAAGGAGGCGGAGAGGGAGGAGGACCGAGGGTTCA
AATTACGTCGTCCGTCTCGCCTGGTAGCGCTGTTGTTGACAATGATGGAG
GGGACGAGGCAGACTCAGAATTCATATCGTTAAGCCCCCAGACAGGTCAG
CAAGGAGAACGAGAGGGGAATTTGATCAAGATTTGTGTGACAGGTGCTGA
CGAGAAGGCCGTCCTGGCAGCCGTGGGGGCGTTGCGAGAAGTAGGAGAAG
GCCAAGCATCGCTCCTCGAGGCGATCGCACGGCTTAAAATCGAATTTCCC
GCTTTCCAAAGCGGTAATGGAGGCCGTTCCAAATCGAAGGGAGGGATAGG
TAGGGTTGCTTGGAAGAGCAGCGATGGAGGAGGGTCGAGATTGAACAAAC
GCGGATGAGAGAAGAGCAACAGGCCCAAATGTGATGGTGCCCTTATCGGC
GATACAGGAAGTTGTAATTCAACGCCTGCGCCGTCCGCGTGATGTATTGA
TGAATGTAGATTTTTGATTTTTGGAAAGAAGCGACTGATAAAGTAATTAT
ACGACCCAAAACGTGACATCCATA
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protein sequence of NO02G03350.1

>NO02G03350.1-protein ID=NO02G03350.1-protein|Name=NO02G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=796bp
MRWPPAAGGGGGGGRDSRMDTGGDPGRGEVREVEEEVVEEEEGKEEVVEE
EEEGKEEEGKEEEEEEEKEEEGGRSRRLRRRTRRRGGRGGGREGGGKGGG
GGEGGGEGGGGGGGEGGGGEGGGGGGGRGGGGRRGKRTRAAEAAAAAQRR
LTIQMALAEARARAAAGGGGGGGRDSRMDTGGDPGREVEEEVVEEEEEGK
EEEGKEEEEEEEEEEEEEEEEGEDEEEDEKEDEEEAEAEEAEAEEAEAEE
AEEEAEEEEGVEAEELEEKEAEKNEAEAEEDEDEAEEEVMGGPSEDCIDV
TPVNSSCLGTAMGHVISYWCTGEWSVEKLVPMIFGLVNRGKIRRQYSPSK
AMASQADWRGGHGHVHGRESRGRGTPLPNGAQSKLSLDFFRSADLHLRDS
CTLSLYVPIEQVGLVIGKKGAKIKYIQDASRARVSVEPTEDVTDSAWSLV
SVRGKPSGCFTAARMIAGLVEELDDCIAQFPLFKSRLVQVIGKSSANLRR
ISADTNVRIYIPGWKDKESNYVQLEGEVDAVLKAVVEVVDAAYSGGGYRS
SSNAGGDREGESDGQVAMVDEATTPIAAAYPITSKGAPTSIIEEIIPVSI
SQLDILTKGSTSAAIVLISKHTGTRIKKESKPREKENGTVPEAEEQVFMD
KSQPKDKEAEEGGYEEGGGEGGGPRVQITSSVSPGSAVVDNDGGDEADSE
FISLSPQTGQQGEREGNLIKICVTGADEKAVLAAVGALREVGEGQASLLE
AIARLKIEFPAFQSGNGGRSKSKGGIGRVAWKSSDGGGSRLNKRG*
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Synonyms
Publications