NO02G03310, NO02G03310 (gene) Nannochloropsis oceanica

Overview
NameNO02G03310
Unique NameNO02G03310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2164
Alignment locationchr2:888758..890921 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna repair protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:888758..890921 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0061630ubiquitin protein ligase activity
GO:0003697single-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006513protein monoubiquitination
GO:0006301postreplication repair
Homology
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BLAST of NO02G03310 vs. NCBI_GenBank
Match: EWM30209.1 (dna repair protein [Nannochloropsis gaditana])

HSP 1 Score: 347.8 bits (891), Expect = 7.200e-92
Identity = 249/644 (38.66%), Postives = 339/644 (52.64%), Query Frame = 0 
Query:    1 MEDEQLDISEDWLAAGALGSQMARFEAHLRCPICARFLETAMVAECGHAFCSLCVRDWLGRGEDFQTCPHCKGNRKPNTVLHKDRLKPCMSLDSAAREFKEARATLLQAVLYPGYSNSGGLSCGKGSRKKAIGSSRSGVGYGDRGSGNSSRRAFGAQQQQELDGYWAGKAWSTILKRHPGYHTIKEKVLRQELGAMNMTSNGKKEELVFRHQTFIKLAEAEADKVKLGHQTRSRREVIQEVEEKAQVRFNNGSGGMGGGRQAIHLDSVAQHKGFDEMIRAIKRQQKEQKRKDHRLSEGGGREGDGGKGRGRQKGEDVVAHTEGQEVERKDNNSEQKIWEKDEREVKEDVSDEREPGTAAPQSIAELDLGAGVKGNAKRDVNLDATRNGIDAGNIGDGAGRGVASLSPIEL--QEDIGAVAHISMGREXXXXXXXXXXXXXXXXXXXXXXXXXXRRVGASSRNGNESGHHKRPYSLLTSLTAK---SSLPPSTIMTTSWNCQSCTLTNAGPVRNCAACGVPRQVSIARKDSLKVVQDTQQKLFEEARKQQQKQPQLVPSSMPVTLERKAGESISPNLNSANISTSADIVVRLLRV----DGALGPSYHM---LGKSRYEKQ-----EGQNVEREEGCHGNKKDSM 628
            M +  LD+ EDWL AG+LG+Q+ARFE+HLRCPICA+FLETAM AECGH FCS+CVRDWLGRGED Q CP CK NRKPN VL+KDRLKPCMSLDSAAR FKE R  LL+AV   G           G   K    +R   G  +  S  + RRA     Q+ LD +WA K WS  LKRHPGYH +KEK LRQEL AM M ++GKK++LV RHQTFIKLAEAEADKV LG  TR+R +V++EVEEK + R N G+G M   R  +++++++QH+G+  MI+ ++R+QKEQKR                    RQ G  + +  +  E     N  ++K  E +  E KE    + E G    +  A + +    +GN   + +L  ++NG       D     ++S S  +L  ++D   V H+                                     S         +R YS    +  K    S+   T   + W CQ+CTL NAG   NCAAC VPR+  I    S+K V+  Q+ L  EA + + +Q           + + AG++++   N         + VRL RV     G  G SY +   + ++++E +     EG +V+ EE   G  ++SM
Sbjct:   58 MAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAG-----------GCDAKIEEEARQRTG-RNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSM--ARAPVNVETLSQHEGYKIMIKEMRRRQKEQKR--------------------RQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKE---WKPERGVQKAKYAAAIAICGANRGN---EQDLGGSQNGDVRQTKSDALRTDLSSPSGHQLVGKDDDEDVMHLQT---------------------------------VKSETSRSIDMKRRQYSKDDEVNYKQRRKSVNTLTACASRWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDN---------LGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSM 619
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BLAST of NO02G03310 vs. NCBI_GenBank
Match: XP_001590557.1 (hypothetical protein SS1G_08297 [Sclerotinia sclerotiorum 1980 UF-70] >EDN92434.1 hypothetical protein SS1G_08297 [Sclerotinia sclerotiorum 1980 UF-70] >APA12842.1 hypothetical protein sscle_10g076120 [Sclerotinia sclerotiorum 1980 UF-70])

HSP 1 Score: 72.8 bits (177), Expect = 4.400e-9
Identity = 55/177 (31.07%), Postives = 79/177 (44.63%), Query Frame = 0 
Query:    1 MEDEQLDI--SEDWLAAGALGSQMARFEAHLRCPICARFLETAMVAECGHAFCSLCVRDWLGRGEDFQTCPHCKGNRKPNTVLHKDRLKPCMSLDSAAREFKEARATLLQAVLYPGYSNSGGLSCGKGSRKKAIGSSRSGVGYGDRGSGNSSRRAFGAQQQQELDGYWAGKAWSTIL 176
            M+D+  DI  S DWL  G   SQ+A  ++ LRC +C  F  T M+  C H FCSLC+R  L        CP C+ N +      + +LKP  +++     FK AR   L+    P       ++     RK+ I    S +G  D    N   RA   Q  + L+   A KA   ++
Sbjct:   34 MKDDSFDIADSTDWL--GTPLSQLADVDSLLRCQVCKDFFTTPMITSCSHTFCSLCIRRCLNND---SKCPTCRSNDQ------EIKLKPNAAIEDLVEAFKRARPAALELARRPAVE----ITVTSPKRKREI----SDLGGLDEQGVNKKTRASSRQAARRLESAEAAKASKDVI 191
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BLAST of NO02G03310 vs. NCBI_GenBank
Match: ORX74583.1 (hypothetical protein DL89DRAFT_264422 [Linderina pennispora])

HSP 1 Score: 65.1 bits (157), Expect = 9.300e-7
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 0 
Query:    3 DEQLDISEDWLAAGALGSQMARFEAHLRCPICARFLETAMV-AECGHAFCSLCVRDWLGRGEDFQTCPHCKGNRKPNTVLHKDRLKPCMSLDSAAREFKEARATLLQAV 111
            D  ++   DW A  A    +   +  LRCPIC  +L+TAM  A CGH FCSLCVR  L +      CP C      +  L +  L+P   +DS  + FK+ R  LL  +
Sbjct:    2 DTDIEDPTDWPAEFA---HLRETDQLLRCPICKEYLDTAMASANCGHTFCSLCVRRCLSQKTQ---CPMC------HDQLTESDLQPSRLIDSLVKSFKQGRRQLLDTL 98
The following BLAST results are available for this feature:
BLAST of NO02G03310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM30209.17.200e-9238.66dna repair protein [Nannochloropsis gaditana][more]
XP_001590557.14.400e-931.07hypothetical protein SS1G_08297 [Sclerotinia scler... [more]
ORX74583.19.300e-736.70hypothetical protein DL89DRAFT_264422 [Linderina p... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006982NSK006982Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03310.1NO02G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574649gene_919Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100003g151gene332Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03310.1NO02G03310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03310 ID=NO02G03310|Name=NO02G03310|organism=Nannochloropsis oceanica|type=gene|length=2164bp
ATGGAAGACGAACAGTTGGACATATCCGAGGATTGGCTGGCCGCAGGAGC
ATTAGGATCACAAATGGCCCGCTTCGAGGCGCACTTACGCTGCCCGATTT
GCGCCAGGTTTTTGGAGACGGCAATGGTTGCCGAATGCGGgtgggttcaa
gagggtgtggagagagagagagagagagagagagagagagagagagagag
agagagagagagagagagagagagaatagagagagagagaatagagagag
agaaagagagcgtttttttccggcccccgcgtgattcccctcttgatgtc
ttatttcttatgttattcattcccttcctcaacttttcccttcacccttt
cccaaagACATGCATTTTGCTCTTTATGTGTGAGAGACTGGCTAGGCCGC
GGTGAGGATTTCCAAACCTGCCCGCACTGCAAGGGCAACAGGAAGCCTAA
CACCGTTTTACACAAAGACCGGCTCAAACCCTGCATGAGCCTTGACAGCG
CCGCCAGAGAATTCAAAGAGGCAAGGGCGACACTTTTGCAAGCCGTTCTG
TACCCGGGTTACAGCAATTCAGGAGGCCTCAGCTGCGGAAAAGGAAGCAG
AAAAAAAGCAATTGGCAGCAGCAGAAGTGGGGTTGGTTATGGTGATAGGG
GCAGTGGGAACAGTAGTCGGCGGGCGTTCGGGGCGCAGCAACAGCAAGAG
TTGGATGGGTACTGGGCGGGGAAGGCATGGAGCACGATATTGAAGCGCCA
CCCGGGCTATCACACTATTAAGGAGAAGGTGCTGCGTCAGGAGTTGGGGG
CAATGAACATGACGTCGAATGGGAAGAAGGAGGAGCTTGTCTTTCGGCAC
CAGACATTTATTAAGTTGGCTGAGGCAGAGGCGGATAAGGTGAAGCTTGG
ACACCAAACGCGGTCTCGGCGGGAAGTGATCCAAGAAGTGGAAGAAAAGG
CTCAGGTTCGCTTTAATAATGGCAGTGGAGGAATGGGAGGAGGGCGACAA
GCTATACACTTGGACAGTGTGGCACAGCACAAAGGCTTTGACGAGATGAT
TCGGGCAATAAAGCGCCAGCAGAAGGAGCAGAAACGGAAAGACCATAGAT
TATCAGAAGGTGGGGGAAGGGAAGGGGATGGAGGAAAAGGACGTGGGAGA
CAGAAGGGGGAAGACGTCGTAGCTCATACTGAAGGACAAGAGGTAGAGCG
GAAGGATAACAACTCAGAACAGAAGATCTGGGAGAAGGACGAAAGGGAAG
TGAAGGAGGACGTCTCAGACGAGAGGGAACCAGGGACCGCAGCACCACAA
TCGATCGCAGAATTAGACTTAGGAGCAGGGGTGAAAGGGAATGCAAAGAG
AGATGTTAATTTAGACGCTACGAGAAATGGGATTGACGCGGGGAATATAG
GGGACGGGGCCGGAAGGGGAGTTGCTTCCCTTTCTCCTATAGAATTACAG
GAGGATATTGGTGCTGTTGCGCACATATCCATGGGTAGAGAGGAGGAAAG
GGAGGAGGAGGACATCGTGATTATTGACTCGGTAACCAAAAGCAACAGTT
ACAACAGCAATAATTTGAAGCGGCGTGTAGGTGCCAGTAGCCGAAACGGA
AATGAAAGCGGTCATCACAAACGGCCCTACTCTCTGCTTACATCTTTGAC
TGCAAAGAGCTCCTTACCACCGTCAACCATCATGACCACAAGTTGGAATT
GTCAGTCTTGCACCTTGACTAATGCGGGGCCGGTCCGAAACTGTGCTGCG
TGCGGTGTTCCCCGCCAAGTATCTATAGCTCGCAAAGACAGCCTCAAAGT
TGTTCAGGACACTCAGCAAAAGCTTTTTGAAGAAGCTCGCAAGCAACAGC
AAAAACAGCCCCAGCTTGTGCCAAGTAGTATGCCGGTGACTTTGGAACGG
AAGGCTGGTGAGAGTATCAGCCCGAATCTCAACAGCGCTAATATCAGCAC
CAGCGCCGATATTGTAGTCAGATTACTTAGGGTCGATGGAGCTCTCGGGC
CTTCTTACCACATGCTGGGTAAATCCAGATATGAAAAACAGGAGGGGCAA
AACGTGGAACGCGAGGAGGGCTGTCATGGTAATAAGAAGGACTCCATGGA
AGCAGGGGAGAATTGGTCAGTGGACGAGCACGAGACGTGTCAGTTTTACA
GTCCCTCGTATTGA
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protein sequence of NO02G03310.1

>NO02G03310.1-protein ID=NO02G03310.1-protein|Name=NO02G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MEDEQLDISEDWLAAGALGSQMARFEAHLRCPICARFLETAMVAECGHAF
CSLCVRDWLGRGEDFQTCPHCKGNRKPNTVLHKDRLKPCMSLDSAAREFK
EARATLLQAVLYPGYSNSGGLSCGKGSRKKAIGSSRSGVGYGDRGSGNSS
RRAFGAQQQQELDGYWAGKAWSTILKRHPGYHTIKEKVLRQELGAMNMTS
NGKKEELVFRHQTFIKLAEAEADKVKLGHQTRSRREVIQEVEEKAQVRFN
NGSGGMGGGRQAIHLDSVAQHKGFDEMIRAIKRQQKEQKRKDHRLSEGGG
REGDGGKGRGRQKGEDVVAHTEGQEVERKDNNSEQKIWEKDEREVKEDVS
DEREPGTAAPQSIAELDLGAGVKGNAKRDVNLDATRNGIDAGNIGDGAGR
GVASLSPIELQEDIGAVAHISMGREEEREEEDIVIIDSVTKSNSYNSNNL
KRRVGASSRNGNESGHHKRPYSLLTSLTAKSSLPPSTIMTTSWNCQSCTL
TNAGPVRNCAACGVPRQVSIARKDSLKVVQDTQQKLFEEARKQQQKQPQL
VPSSMPVTLERKAGESISPNLNSANISTSADIVVRLLRVDGALGPSYHML
GKSRYEKQEGQNVEREEGCHGNKKDSMEAGENWSVDEHETCQFYSPSY*
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Synonyms
Publications