NO02G03310.1, NO02G03310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03310.1
Unique NameNO02G03310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1947
Alignment locationchr2:888758..890921 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:888758..890921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03310.1 vs.
Match: EWM30209.1 (dna repair protein [Nannochloropsis gaditana])

HSP 1 Score: 359.0 bits (920), Expect = 3.100e-95
Identity = 254/639 (39.75%), Postives = 357/639 (55.87%), Query Frame = 0 
Query:    1 MEDEQLDISEDWLAAGALGSQMARFEAHLRCPICARFLETAMVAECGHAFCSLCVRDWLGRGEDFQTCPHCKGNRKPNTVLHKDRLKPCMSLDSAAREFKEARATLLQAVLYPGYSNSGGLSCGKGSRKKAIGSSRSGVGYGDRGSGNSSRRAFGAQQQQELDGYWAGKAWSTILKRHPGYHTIKEKVLRQELGAMNMTSNGKKEELVFRHQTFIKLAEAEADKVKLGHQTRSRREVIQEVEEKAQVRFNNGSGGMGGGRQAIHLDSVAQHKGFDEMIRAIKRQQKEQKRKDHRLSEGGGREGDGGKGRGRQKGEDVVAHTEGQEVERKDNNSEQKIWEKDEREVKEDVSDEREPGTAAPQSIAELDLGAGVKGNAKRDVNLDATRNGIDAGNIGDGAGRGVASLSPIELQEDIGAVAHISMGREEEREEEDIVIIDSVTKSNSYNSNNLKRRVGASSRNGNESGHHKRPYSLLTSLTAKSSLPPSTIMTTSWNCQSCTLTNAGPVRNCAACGVPRQVSIARKDSLKVVQDTQQKLFEEARKQQQKQPQLVPSSMPVTLERKAGESISPNLNSANISTSADIVVRLLRV----DGALGPSYHM---LGKSRYEKQ-----EGQNVEREEGCHGNKKDSM 628
            M +  LD+ EDWL AG+LG+Q+ARFE+HLRCPICA+FLETAM AECGH FCS+CVRDWLGRGED Q CP CK NRKPN VL+KDRLKPCMSLDSAAR FKE R  LL+AV   G           G   K    +R   G  +  S  + RRA     Q+ LD +WA K WS  LKRHPGYH +KEK LRQEL AM M ++GKK++LV RHQTFIKLAEAEADKV LG  TR+R +V++EVEEK + R N G+G M   R  +++++++QH+G+  MI+ ++R+QKEQKR                    RQ G  + +  +  E     N  ++K  E +  E KE    + E G    +  A + +    +GN   + +L  ++NG       D     ++S S            H  +G++   ++ED++ + +V KS +  S ++KRR      + ++  ++K+    + +LTA +S          W CQ+CTL NAG   NCAAC VPR+  I    S+K V+  Q+ L  EA + + +Q           + + AG++++   N         + VRL RV     G  G SY +   + ++++E +     EG +V+ EE   G  ++SM
Sbjct:   58 MAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAG-----------GCDAKIEEEARQRTGR-NADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSMA--RAPVNVETLSQHEGYKIMIKEMRRRQKEQKR--------------------RQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKE---WKPERGVQKAKYAAAIAICGANRGN---EQDLGGSQNGDVRQTKSDALRTDLSSPS-----------GHQLVGKD---DDEDVMHLQTV-KSETSRSIDMKRR----QYSKDDEVNYKQRRKSVNTLTACAS---------RWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDN---------LGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSM 619
The following BLAST results are available for this feature:
BLAST of NO02G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30209.13.100e-9539.75dna repair protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03310NO02G03310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03310.1NO02G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03310.1.cds1NO02G03310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03310.1.cds2NO02G03310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03310.1 ID=NO02G03310.1|Name=NO02G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp
ATGGAAGACGAACAGTTGGACATATCCGAGGATTGGCTGGCCGCAGGAGC
ATTAGGATCACAAATGGCCCGCTTCGAGGCGCACTTACGCTGCCCGATTT
GCGCCAGGTTTTTGGAGACGGCAATGGTTGCCGAATGCGGACATGCATTT
TGCTCTTTATGTGTGAGAGACTGGCTAGGCCGCGGTGAGGATTTCCAAAC
CTGCCCGCACTGCAAGGGCAACAGGAAGCCTAACACCGTTTTACACAAAG
ACCGGCTCAAACCCTGCATGAGCCTTGACAGCGCCGCCAGAGAATTCAAA
GAGGCAAGGGCGACACTTTTGCAAGCCGTTCTGTACCCGGGTTACAGCAA
TTCAGGAGGCCTCAGCTGCGGAAAAGGAAGCAGAAAAAAAGCAATTGGCA
GCAGCAGAAGTGGGGTTGGTTATGGTGATAGGGGCAGTGGGAACAGTAGT
CGGCGGGCGTTCGGGGCGCAGCAACAGCAAGAGTTGGATGGGTACTGGGC
GGGGAAGGCATGGAGCACGATATTGAAGCGCCACCCGGGCTATCACACTA
TTAAGGAGAAGGTGCTGCGTCAGGAGTTGGGGGCAATGAACATGACGTCG
AATGGGAAGAAGGAGGAGCTTGTCTTTCGGCACCAGACATTTATTAAGTT
GGCTGAGGCAGAGGCGGATAAGGTGAAGCTTGGACACCAAACGCGGTCTC
GGCGGGAAGTGATCCAAGAAGTGGAAGAAAAGGCTCAGGTTCGCTTTAAT
AATGGCAGTGGAGGAATGGGAGGAGGGCGACAAGCTATACACTTGGACAG
TGTGGCACAGCACAAAGGCTTTGACGAGATGATTCGGGCAATAAAGCGCC
AGCAGAAGGAGCAGAAACGGAAAGACCATAGATTATCAGAAGGTGGGGGA
AGGGAAGGGGATGGAGGAAAAGGACGTGGGAGACAGAAGGGGGAAGACGT
CGTAGCTCATACTGAAGGACAAGAGGTAGAGCGGAAGGATAACAACTCAG
AACAGAAGATCTGGGAGAAGGACGAAAGGGAAGTGAAGGAGGACGTCTCA
GACGAGAGGGAACCAGGGACCGCAGCACCACAATCGATCGCAGAATTAGA
CTTAGGAGCAGGGGTGAAAGGGAATGCAAAGAGAGATGTTAATTTAGACG
CTACGAGAAATGGGATTGACGCGGGGAATATAGGGGACGGGGCCGGAAGG
GGAGTTGCTTCCCTTTCTCCTATAGAATTACAGGAGGATATTGGTGCTGT
TGCGCACATATCCATGGGTAGAGAGGAGGAAAGGGAGGAGGAGGACATCG
TGATTATTGACTCGGTAACCAAAAGCAACAGTTACAACAGCAATAATTTG
AAGCGGCGTGTAGGTGCCAGTAGCCGAAACGGAAATGAAAGCGGTCATCA
CAAACGGCCCTACTCTCTGCTTACATCTTTGACTGCAAAGAGCTCCTTAC
CACCGTCAACCATCATGACCACAAGTTGGAATTGTCAGTCTTGCACCTTG
ACTAATGCGGGGCCGGTCCGAAACTGTGCTGCGTGCGGTGTTCCCCGCCA
AGTATCTATAGCTCGCAAAGACAGCCTCAAAGTTGTTCAGGACACTCAGC
AAAAGCTTTTTGAAGAAGCTCGCAAGCAACAGCAAAAACAGCCCCAGCTT
GTGCCAAGTAGTATGCCGGTGACTTTGGAACGGAAGGCTGGTGAGAGTAT
CAGCCCGAATCTCAACAGCGCTAATATCAGCACCAGCGCCGATATTGTAG
TCAGATTACTTAGGGTCGATGGAGCTCTCGGGCCTTCTTACCACATGCTG
GGTAAATCCAGATATGAAAAACAGGAGGGGCAAAACGTGGAACGCGAGGA
GGGCTGTCATGGTAATAAGAAGGACTCCATGGAAGCAGGGGAGAATTGGT
CAGTGGACGAGCACGAGACGTGTCAGTTTTACAGTCCCTCGTATTGA
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protein sequence of NO02G03310.1

>NO02G03310.1-protein ID=NO02G03310.1-protein|Name=NO02G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MEDEQLDISEDWLAAGALGSQMARFEAHLRCPICARFLETAMVAECGHAF
CSLCVRDWLGRGEDFQTCPHCKGNRKPNTVLHKDRLKPCMSLDSAAREFK
EARATLLQAVLYPGYSNSGGLSCGKGSRKKAIGSSRSGVGYGDRGSGNSS
RRAFGAQQQQELDGYWAGKAWSTILKRHPGYHTIKEKVLRQELGAMNMTS
NGKKEELVFRHQTFIKLAEAEADKVKLGHQTRSRREVIQEVEEKAQVRFN
NGSGGMGGGRQAIHLDSVAQHKGFDEMIRAIKRQQKEQKRKDHRLSEGGG
REGDGGKGRGRQKGEDVVAHTEGQEVERKDNNSEQKIWEKDEREVKEDVS
DEREPGTAAPQSIAELDLGAGVKGNAKRDVNLDATRNGIDAGNIGDGAGR
GVASLSPIELQEDIGAVAHISMGREEEREEEDIVIIDSVTKSNSYNSNNL
KRRVGASSRNGNESGHHKRPYSLLTSLTAKSSLPPSTIMTTSWNCQSCTL
TNAGPVRNCAACGVPRQVSIARKDSLKVVQDTQQKLFEEARKQQQKQPQL
VPSSMPVTLERKAGESISPNLNSANISTSADIVVRLLRVDGALGPSYHML
GKSRYEKQEGQNVEREEGCHGNKKDSMEAGENWSVDEHETCQFYSPSY*
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mRNA from alignment at chr2:888758..890921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03310.1 ID=NO02G03310.1|Name=NO02G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at chr2:888758..890921- (Nannochloropsis oceanica)
ATGGAAGACGAACAGTTGGACATATCCGAGGATTGGCTGGCCGCAGGAGC
ATTAGGATCACAAATGGCCCGCTTCGAGGCGCACTTACGCTGCCCGATTT
GCGCCAGGTTTTTGGAGACGGCAATGGTTGCCGAATGCGGGTGGGTTCAA
GAGGGTGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAATAGAGAGAGAGAGAATAGAGAGAG
AGAAAGAGAGCGTTTTTTTCCGGCCCCCGCGTGATTCCCCTCTTGATGTC
TTATTTCTTATGTTATTCATTCCCTTCCTCAACTTTTCCCTTCACCCTTT
CCCAAAGACATGCATTTTGCTCTTTATGTGTGAGAGACTGGCTAGGCCGC
GGTGAGGATTTCCAAACCTGCCCGCACTGCAAGGGCAACAGGAAGCCTAA
CACCGTTTTACACAAAGACCGGCTCAAACCCTGCATGAGCCTTGACAGCG
CCGCCAGAGAATTCAAAGAGGCAAGGGCGACACTTTTGCAAGCCGTTCTG
TACCCGGGTTACAGCAATTCAGGAGGCCTCAGCTGCGGAAAAGGAAGCAG
AAAAAAAGCAATTGGCAGCAGCAGAAGTGGGGTTGGTTATGGTGATAGGG
GCAGTGGGAACAGTAGTCGGCGGGCGTTCGGGGCGCAGCAACAGCAAGAG
TTGGATGGGTACTGGGCGGGGAAGGCATGGAGCACGATATTGAAGCGCCA
CCCGGGCTATCACACTATTAAGGAGAAGGTGCTGCGTCAGGAGTTGGGGG
CAATGAACATGACGTCGAATGGGAAGAAGGAGGAGCTTGTCTTTCGGCAC
CAGACATTTATTAAGTTGGCTGAGGCAGAGGCGGATAAGGTGAAGCTTGG
ACACCAAACGCGGTCTCGGCGGGAAGTGATCCAAGAAGTGGAAGAAAAGG
CTCAGGTTCGCTTTAATAATGGCAGTGGAGGAATGGGAGGAGGGCGACAA
GCTATACACTTGGACAGTGTGGCACAGCACAAAGGCTTTGACGAGATGAT
TCGGGCAATAAAGCGCCAGCAGAAGGAGCAGAAACGGAAAGACCATAGAT
TATCAGAAGGTGGGGGAAGGGAAGGGGATGGAGGAAAAGGACGTGGGAGA
CAGAAGGGGGAAGACGTCGTAGCTCATACTGAAGGACAAGAGGTAGAGCG
GAAGGATAACAACTCAGAACAGAAGATCTGGGAGAAGGACGAAAGGGAAG
TGAAGGAGGACGTCTCAGACGAGAGGGAACCAGGGACCGCAGCACCACAA
TCGATCGCAGAATTAGACTTAGGAGCAGGGGTGAAAGGGAATGCAAAGAG
AGATGTTAATTTAGACGCTACGAGAAATGGGATTGACGCGGGGAATATAG
GGGACGGGGCCGGAAGGGGAGTTGCTTCCCTTTCTCCTATAGAATTACAG
GAGGATATTGGTGCTGTTGCGCACATATCCATGGGTAGAGAGGAGGAAAG
GGAGGAGGAGGACATCGTGATTATTGACTCGGTAACCAAAAGCAACAGTT
ACAACAGCAATAATTTGAAGCGGCGTGTAGGTGCCAGTAGCCGAAACGGA
AATGAAAGCGGTCATCACAAACGGCCCTACTCTCTGCTTACATCTTTGAC
TGCAAAGAGCTCCTTACCACCGTCAACCATCATGACCACAAGTTGGAATT
GTCAGTCTTGCACCTTGACTAATGCGGGGCCGGTCCGAAACTGTGCTGCG
TGCGGTGTTCCCCGCCAAGTATCTATAGCTCGCAAAGACAGCCTCAAAGT
TGTTCAGGACACTCAGCAAAAGCTTTTTGAAGAAGCTCGCAAGCAACAGC
AAAAACAGCCCCAGCTTGTGCCAAGTAGTATGCCGGTGACTTTGGAACGG
AAGGCTGGTGAGAGTATCAGCCCGAATCTCAACAGCGCTAATATCAGCAC
CAGCGCCGATATTGTAGTCAGATTACTTAGGGTCGATGGAGCTCTCGGGC
CTTCTTACCACATGCTGGGTAAATCCAGATATGAAAAACAGGAGGGGCAA
AACGTGGAACGCGAGGAGGGCTGTCATGGTAATAAGAAGGACTCCATGGA
AGCAGGGGAGAATTGGTCAGTGGACGAGCACGAGACGTGTCAGTTTTACA
GTCCCTCGTATTGA
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Coding sequence (CDS) from alignment at chr2:888758..890921-

>NO02G03310.1 ID=NO02G03310.1|Name=NO02G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at chr2:888758..890921- (Nannochloropsis oceanica)
ATGGAAGACGAACAGTTGGACATATCCGAGGATTGGCTGGCCGCAGGAGC
ATTAGGATCACAAATGGCCCGCTTCGAGGCGCACTTACGCTGCCCGATTT
GCGCCAGGTTTTTGGAGACGGCAATGGTTGCCGAATGCGGACATGCATTT
TGCTCTTTATGTGTGAGAGACTGGCTAGGCCGCGGTGAGGATTTCCAAAC
CTGCCCGCACTGCAAGGGCAACAGGAAGCCTAACACCGTTTTACACAAAG
ACCGGCTCAAACCCTGCATGAGCCTTGACAGCGCCGCCAGAGAATTCAAA
GAGGCAAGGGCGACACTTTTGCAAGCCGTTCTGTACCCGGGTTACAGCAA
TTCAGGAGGCCTCAGCTGCGGAAAAGGAAGCAGAAAAAAAGCAATTGGCA
GCAGCAGAAGTGGGGTTGGTTATGGTGATAGGGGCAGTGGGAACAGTAGT
CGGCGGGCGTTCGGGGCGCAGCAACAGCAAGAGTTGGATGGGTACTGGGC
GGGGAAGGCATGGAGCACGATATTGAAGCGCCACCCGGGCTATCACACTA
TTAAGGAGAAGGTGCTGCGTCAGGAGTTGGGGGCAATGAACATGACGTCG
AATGGGAAGAAGGAGGAGCTTGTCTTTCGGCACCAGACATTTATTAAGTT
GGCTGAGGCAGAGGCGGATAAGGTGAAGCTTGGACACCAAACGCGGTCTC
GGCGGGAAGTGATCCAAGAAGTGGAAGAAAAGGCTCAGGTTCGCTTTAAT
AATGGCAGTGGAGGAATGGGAGGAGGGCGACAAGCTATACACTTGGACAG
TGTGGCACAGCACAAAGGCTTTGACGAGATGATTCGGGCAATAAAGCGCC
AGCAGAAGGAGCAGAAACGGAAAGACCATAGATTATCAGAAGGTGGGGGA
AGGGAAGGGGATGGAGGAAAAGGACGTGGGAGACAGAAGGGGGAAGACGT
CGTAGCTCATACTGAAGGACAAGAGGTAGAGCGGAAGGATAACAACTCAG
AACAGAAGATCTGGGAGAAGGACGAAAGGGAAGTGAAGGAGGACGTCTCA
GACGAGAGGGAACCAGGGACCGCAGCACCACAATCGATCGCAGAATTAGA
CTTAGGAGCAGGGGTGAAAGGGAATGCAAAGAGAGATGTTAATTTAGACG
CTACGAGAAATGGGATTGACGCGGGGAATATAGGGGACGGGGCCGGAAGG
GGAGTTGCTTCCCTTTCTCCTATAGAATTACAGGAGGATATTGGTGCTGT
TGCGCACATATCCATGGGTAGAGAGGAGGAAAGGGAGGAGGAGGACATCG
TGATTATTGACTCGGTAACCAAAAGCAACAGTTACAACAGCAATAATTTG
AAGCGGCGTGTAGGTGCCAGTAGCCGAAACGGAAATGAAAGCGGTCATCA
CAAACGGCCCTACTCTCTGCTTACATCTTTGACTGCAAAGAGCTCCTTAC
CACCGTCAACCATCATGACCACAAGTTGGAATTGTCAGTCTTGCACCTTG
ACTAATGCGGGGCCGGTCCGAAACTGTGCTGCGTGCGGTGTTCCCCGCCA
AGTATCTATAGCTCGCAAAGACAGCCTCAAAGTTGTTCAGGACACTCAGC
AAAAGCTTTTTGAAGAAGCTCGCAAGCAACAGCAAAAACAGCCCCAGCTT
GTGCCAAGTAGTATGCCGGTGACTTTGGAACGGAAGGCTGGTGAGAGTAT
CAGCCCGAATCTCAACAGCGCTAATATCAGCACCAGCGCCGATATTGTAG
TCAGATTACTTAGGGTCGATGGAGCTCTCGGGCCTTCTTACCACATGCTG
GGTAAATCCAGATATGAAAAACAGGAGGGGCAAAACGTGGAACGCGAGGA
GGGCTGTCATGGTAATAAGAAGGACTCCATGGAAGCAGGGGAGAATTGGT
CAGTGGACGAGCACGAGACGTGTCAGTTTTACAGTCCCTCGTATTGA
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Synonyms
Publications