NO02G03160, NO02G03160 (gene) Nannochloropsis oceanica

Overview
NameNO02G03160
Unique NameNO02G03160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2399
Alignment locationchr2:849784..852182 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:849784..852182 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G03160 vs. NCBI_GenBank
Match: EWM30207.1 (hypothetical protein Naga_100003g169 [Nannochloropsis gaditana])

HSP 1 Score: 293.1 bits (749), Expect = 1.200e-75
Identity = 168/313 (53.67%), Postives = 205/313 (65.50%), Query Frame = 0 
Query:   58 MSPMQKPAGAYTRPGYLRTLGAYENVKKSYEYCRGFMGVRSLAPVVEWVVEGTLSRVPVVKNLKDDEETADGYPMLHGLDNRLAELLTHFDDYVDVSVADPTSIQGRALRVVTHTVHALAGYTPFVGGQIRRLMIEIDPDHMSRVPRLMDRPALDTTSVDVGKCGYEHDRGEPEGRGSIDGETDDVSVMTDETSDEVAERQGNK--KTKRKDKRFLQNMGKGIKKVMNYPRTPVHELPPDILSSRKDSPSPSIGTEEAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFFGSGSKKSIDSPVAASTPSS 369
            MS   K  GAY RPGYLRTLGAY  VKKSYEYCRG +GVR+LAPVVE V EGTLS +P+VKNLK DE +ADG+P+LHG+D+RLA+LL  FD+Y+D SV DPT++QG+ALR VT +VH  AG+TP +G  I RLMIEIDPDHMS  PRL +  A++    D G    E       GR S D + DDVSVMTDETS+E+ +RQ  K  K KRK+KRFLQNMGKGIKKVMNYP+TPVH++  DI+    D PS   G + A A                               KFF +G+ K ++S  A+S  S+
Sbjct:    1 MSTTHKSYGAYRRPGYLRTLGAYRGVKKSYEYCRGLVGVRTLAPVVERVAEGTLSHIPLVKNLK-DEHSADGFPVLHGIDSRLADLLNSFDEYLDNSVEDPTTVQGQALRAVTRSVHFFAGWTPVIGKSICRLMIEIDPDHMSLAPRLANHAAVEAR--DEGNRTPEPLAESQNGRESFDRDMDDVSVMTDETSEEITDRQNKKEGKAKRKEKRFLQNMGKGIKKVMNYPKTPVHDI-SDIVG---DKPSAGGGLKMADA---IKAVPSATAVNGDSEAVSDLKSSQTASRKFFNAGNTKRVESRSASSISST 303
The following BLAST results are available for this feature:
BLAST of NO02G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30207.11.200e-7553.67hypothetical protein Naga_100003g169 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006965NSK006965Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G03160.1NO02G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100003g169gene316Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G03160.1NO02G03160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G03160 ID=NO02G03160|Name=NO02G03160|organism=Nannochloropsis oceanica|type=gene|length=2399bp
GTACCGCACCTAGCACCTGTAACTTTTGGGTTGGGTGGGGACGCGTGAGA
GCTGTTTTAAGTAAGGACAAAAAGCCAGCAGCTAGGGCAGGGCTCGATCG
CCTGATCTGGTCGGCCTTCACCATGGGGTGCCCCTCAGAGAGCGACCGAG
ATGCTTCGGTGCTTCGATGGGCACACCACCGAAAGCTAAAACCATGGCGC
CCCCTTTGATCTGTCTTTACCAGTCTATTTATCAGTCCTTAGCCCTCGGC
TGGCGCAAATTCAAGGAGAGTGCTGTCCGCCCATGGTTATGCTGTTGCGT
GCCAAAGGCATGGGGGCGGTTTTGAATAGAGAGAAGGAACAAAATTCCTG
GGCTACCTTGTGCCTTGTACAAAACCATTTCATGCCGCACCGACTCCTCT
CTCGAGAACCCCTCTCAACTGATAATCTATCTCACTACGCATATACAGCA
AAGATGTCCCCGATGCAGAAGCCCGCTGGCGCCTATACTCGTCCTGGgtg
agtgaatggaagggggaagggaatgaagaggaagagggccgacgatagct
gctgggttccaggagtcggttacgctcttacccactctcgtcaagaagaa
cacgaagagaaagcaagaaggagtgcaagaagggaagggtggagaagggg
cggggcggggacctcgctccgacagccttatcaaatttcaatgtgcaagc
ccgctttccatgccttccccctttaatcccccctcttctacgttatacac
ccatcagATACTTGCGCACTCTGGGTGCTTACGAGAATGTTAAGAAAAGC
TATGAATACTGCAGGGGGTTTATGGGAGTGCGTTCCCTTGCACCTGTAGT
GGAATGGGTGGTGGAGGGCACGCTTTCCAGAGTCCCGGTAGTGAAGAATC
TCAAAGACGACGAGGAGACCGCGGACGGCTACCCGATGCTGCACGGGCTC
GACAACCGCTTGGCCGAGCTGTTGACACATTTCGACGATTACgtgcgtgt
gtgtgtgtgtgcgtgtgtgtgtgtttgtgtgtgtataaatgtgtgcgtgt
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttt
gtgtgtgtttttcgggggatgggtcacactgaggtctgtcaggtgctggc
atgtcaaggctaacattcttcccccccctccctcccttatttgcttactt
cagGTGGACGTGAGCGTGGCCGACCCCACAAGCATTCAAGGCCGCGCTCT
GCGGGTTGTCACACATACGGTTCATGCGCTGGCAGGCTACACTCCCTTTG
TCGGTGGTCAGATCCGCCGGCTTATGATTGAGATAgtaagtggagcgcat
catactcctttctcgtggggtccctcctcttcataatttccttcgccgtc
cagtccacgtgtctcctggactatgtgcctgaccttttcatatgaccata
ttcttctggcgcagGATCCCGATCACATGTCCCGCGTCCCTCGGCTAATG
GACCGCCCGGCGCTGGACACCACTTCTGTGGATGTGGGGAAGTGCGGGTA
TGAGCATGACCGGGGCGAGCCGGAGGGGCGCGGGTCGATTGATGGGGAGA
CGGACGACGTGAGCGTCATGACGGACGAGACGAGCGATGAGGTTGCGGAG
AGGCAAGGGAATAAAAAGACGAAGgtaagcccgctttgggtccgtttctg
gtatttgcaaaaagatatgactaactcgtatgactaactcacagaagcga
caatgctcactaccccacattcaccgatatcgaagCGCAAGGACAAGCGT
TTCCTGCAGAATATGGGCAAGGGTATAAAAAAGGTCATGAATTATCCCCG
GACGCCGGTGCACGAGCTTCCACCCGATATCCTCAGTAGTAGGAAAGACA
GCCCCAGCCCCAGCATTGGCACCGAGGAGGCCGTCGCCGCTACGCCCTCT
TCCGTTATTAGCAGCTCCGGTGGCGTTTCATCCACCTCCTCCACTTCCTC
CGGCCTTTCTATGCGGAGCACGTCGTCGCGCAAGTTCTTTGGCTCCGGAA
GCAAGAAGAGCATCGATTCGCCGGTCGCGGCCTCCACCCCTTCTTCTTAA
GTGAATGTGGAGGAGCTGAACGTGCGTTGTCTTTATGCGTATGTGCGCCT
TGCGTCAATTTTGGGAAAGAGAGAGGAGAAGGATAGGACATACGGTTGAG
AGAAAGGAACTCCCGGTCGTCCACGTTTTGTTTTCGTCATTTTTGGCTCT
GTAAAGAAAAAGGGGATTTAAAGAAACGGGGCAGTTGCGTTGAGAGGCAA
GAGAGGAGCAAAAATAGTGAATGGCAAAAAATGGGTTGAATTTGCTGCTG
AACACAGAAAGGACACCAAAGAAGCAAAGAAGCTAGCGTGGGGGAGGAA
back to top

protein sequence of NO02G03160.1

>NO02G03160.1-protein ID=NO02G03160.1-protein|Name=NO02G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MVMLLRAKGMGAVLNREKEQNSWATLCLVQNHFMPHRLLSREPLSTDNLS
HYAYTAKMSPMQKPAGAYTRPGYLRTLGAYENVKKSYEYCRGFMGVRSLA
PVVEWVVEGTLSRVPVVKNLKDDEETADGYPMLHGLDNRLAELLTHFDDY
VDVSVADPTSIQGRALRVVTHTVHALAGYTPFVGGQIRRLMIEIDPDHMS
RVPRLMDRPALDTTSVDVGKCGYEHDRGEPEGRGSIDGETDDVSVMTDET
SDEVAERQGNKKTKRKDKRFLQNMGKGIKKVMNYPRTPVHELPPDILSSR
KDSPSPSIGTEEAVAATPSSVISSSGGVSSTSSTSSGLSMRSTSSRKFFG
SGSKKSIDSPVAASTPSS*
back to top
Synonyms
Publications