NO02G03160.1, NO02G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03160.1
Unique NameNO02G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1688
Alignment locationchr2:849784..852182 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:849784..852182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03160.1 vs.
Match: EWM30207.1 (hypothetical protein Naga_100003g169 [Nannochloropsis gaditana])

HSP 1 Score: 303.9 bits (777), Expect = 6.700e-79
Identity = 175/313 (55.91%), Postives = 217/313 (69.33%), Query Frame = 0 
Query:   58 MSPMQKPAGAYTRPGYLRTLGAYENVKKSYEYCRGFMGVRSLAPVVEWVVEGTLSRVPVVKNLKDDEETADGYPMLHGLDNRLAELLTHFDDYVDVSVADPTSIQGRALRVVTHTVHALAGYTPFVGGQIRRLMIEIDPDHMSRVPRLMDRPALDTTSVDVGKCGYEHDRGEPEGRGSIDGETDDVSVMTDETSDEVAERQGNK--KTKRKDKRFLQNMGKGIKKVMNYPRTPVHELPPDILSSRKDSPSPSIGTEEAVAATPSSVISSSGGVSSTSSTSSGLSMRSTSSRKFFGSGSKKSIDSPVAASTPSS 369
            MS   K  GAY RPGYLRTLGAY  VKKSYEYCRG +GVR+LAPVVE V EGTLS +P+VKNLKD E +ADG+P+LHG+D+RLA+LL  FD+Y+D SV DPT++QG+ALR VT +VH  AG+TP +G  I RLMIEIDPDHMS  PRL +  A++    D G    E       GR S D + DDVSVMTDETS+E+ +RQ  K  K KRK+KRFLQNMGKGIKKVMNYP+TPVH++  DI+   K S    +   +A+ A PS+       V+  S   S L    T+SRKFF +G+ K ++S  A+S  S+
Sbjct:    1 MSTTHKSYGAYRRPGYLRTLGAYRGVKKSYEYCRGLVGVRTLAPVVERVAEGTLSHIPLVKNLKD-EHSADGFPVLHGIDSRLADLLNSFDEYLDNSVEDPTTVQGQALRAVTRSVHFFAGWTPVIGKSICRLMIEIDPDHMSLAPRLANHAAVEAR--DEGNRTPEPLAESQNGRESFDRDMDDVSVMTDETSEEITDRQNKKEGKAKRKEKRFLQNMGKGIKKVMNYPKTPVHDI-SDIVGD-KPSAGGGLKMADAIKAVPSAT-----AVNGDSEAVSDLKSSQTASRKFFNAGNTKRVESRSASSISST 303
The following BLAST results are available for this feature:
BLAST of NO02G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30207.16.700e-7955.91hypothetical protein Naga_100003g169 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03160NO02G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03160.1NO02G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03160.1.cds1NO02G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03160.1.cds2NO02G03160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03160.1.cds3NO02G03160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03160.1.cds4NO02G03160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03160.1.cds5NO02G03160.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03160.1 ID=NO02G03160.1|Name=NO02G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp
GTACCGCACCTAGCACCTGTAACTTTTGGGTTGGGTGGGGACGCGTGAGA
GCTGTTTTAAGTAAGGACAAAAAGCCAGCAGCTAGGGCAGGGCTCGATCG
CCTGATCTGGTCGGCCTTCACCATGGGGTGCCCCTCAGAGAGCGACCGAG
ATGCTTCGGTGCTTCGATGGGCACACCACCGAAAGCTAAAACCATGGCGC
CCCCTTTGATCTGTCTTTACCAGTCTATTTATCAGTCCTTAGCCCTCGGC
TGGCGCAAATTCAAGGAGAGTGCTGTCCGCCCATGGTTATGCTGTTGCGT
GCCAAAGGCATGGGGGCGGTTTTGAATAGAGAGAAGGAACAAAATTCCTG
GGCTACCTTGTGCCTTGTACAAAACCATTTCATGCCGCACCGACTCCTCT
CTCGAGAACCCCTCTCAACTGATAATCTATCTCACTACGCATATACAGCA
AAGATGTCCCCGATGCAGAAGCCCGCTGGCGCCTATACTCGTCCTGGATA
CTTGCGCACTCTGGGTGCTTACGAGAATGTTAAGAAAAGCTATGAATACT
GCAGGGGGTTTATGGGAGTGCGTTCCCTTGCACCTGTAGTGGAATGGGTG
GTGGAGGGCACGCTTTCCAGAGTCCCGGTAGTGAAGAATCTCAAAGACGA
CGAGGAGACCGCGGACGGCTACCCGATGCTGCACGGGCTCGACAACCGCT
TGGCCGAGCTGTTGACACATTTCGACGATTACGTGGACGTGAGCGTGGCC
GACCCCACAAGCATTCAAGGCCGCGCTCTGCGGGTTGTCACACATACGGT
TCATGCGCTGGCAGGCTACACTCCCTTTGTCGGTGGTCAGATCCGCCGGC
TTATGATTGAGATAGATCCCGATCACATGTCCCGCGTCCCTCGGCTAATG
GACCGCCCGGCGCTGGACACCACTTCTGTGGATGTGGGGAAGTGCGGGTA
TGAGCATGACCGGGGCGAGCCGGAGGGGCGCGGGTCGATTGATGGGGAGA
CGGACGACGTGAGCGTCATGACGGACGAGACGAGCGATGAGGTTGCGGAG
AGGCAAGGGAATAAAAAGACGAAGCGCAAGGACAAGCGTTTCCTGCAGAA
TATGGGCAAGGGTATAAAAAAGGTCATGAATTATCCCCGGACGCCGGTGC
ACGAGCTTCCACCCGATATCCTCAGTAGTAGGAAAGACAGCCCCAGCCCC
AGCATTGGCACCGAGGAGGCCGTCGCCGCTACGCCCTCTTCCGTTATTAG
CAGCTCCGGTGGCGTTTCATCCACCTCCTCCACTTCCTCCGGCCTTTCTA
TGCGGAGCACGTCGTCGCGCAAGTTCTTTGGCTCCGGAAGCAAGAAGAGC
ATCGATTCGCCGGTCGCGGCCTCCACCCCTTCTTCTTAAGTGAATGTGGA
GGAGCTGAACGTGCGTTGTCTTTATGCGTATGTGCGCCTTGCGTCAATTT
TGGGAAAGAGAGAGGAGAAGGATAGGACATACGGTTGAGAGAAAGGAACT
CCCGGTCGTCCACGTTTTGTTTTCGTCATTTTTGGCTCTGTAAAGAAAAA
GGGGATTTAAAGAAACGGGGCAGTTGCGTTGAGAGGCAAGAGAGGAGCAA
AAATAGTGAATGGCAAAAAATGGGTTGAATTTGCTGCTGAACACAGAAAG
GACACCAAAGAAGCAAAGAAGCTAGCGTGGGGGAGGAA
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protein sequence of NO02G03160.1

>NO02G03160.1-protein ID=NO02G03160.1-protein|Name=NO02G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MVMLLRAKGMGAVLNREKEQNSWATLCLVQNHFMPHRLLSREPLSTDNLS
HYAYTAKMSPMQKPAGAYTRPGYLRTLGAYENVKKSYEYCRGFMGVRSLA
PVVEWVVEGTLSRVPVVKNLKDDEETADGYPMLHGLDNRLAELLTHFDDY
VDVSVADPTSIQGRALRVVTHTVHALAGYTPFVGGQIRRLMIEIDPDHMS
RVPRLMDRPALDTTSVDVGKCGYEHDRGEPEGRGSIDGETDDVSVMTDET
SDEVAERQGNKKTKRKDKRFLQNMGKGIKKVMNYPRTPVHELPPDILSSR
KDSPSPSIGTEEAVAATPSSVISSSGGVSSTSSTSSGLSMRSTSSRKFFG
SGSKKSIDSPVAASTPSS*
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mRNA from alignment at chr2:849784..852182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03160.1 ID=NO02G03160.1|Name=NO02G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2399bp|location=Sequence derived from alignment at chr2:849784..852182- (Nannochloropsis oceanica)
GTACCGCACCTAGCACCTGTAACTTTTGGGTTGGGTGGGGACGCGTGAGA
GCTGTTTTAAGTAAGGACAAAAAGCCAGCAGCTAGGGCAGGGCTCGATCG
CCTGATCTGGTCGGCCTTCACCATGGGGTGCCCCTCAGAGAGCGACCGAG
ATGCTTCGGTGCTTCGATGGGCACACCACCGAAAGCTAAAACCATGGCGC
CCCCTTTGATCTGTCTTTACCAGTCTATTTATCAGTCCTTAGCCCTCGGC
TGGCGCAAATTCAAGGAGAGTGCTGTCCGCCCATGGTTATGCTGTTGCGT
GCCAAAGGCATGGGGGCGGTTTTGAATAGAGAGAAGGAACAAAATTCCTG
GGCTACCTTGTGCCTTGTACAAAACCATTTCATGCCGCACCGACTCCTCT
CTCGAGAACCCCTCTCAACTGATAATCTATCTCACTACGCATATACAGCA
AAGATGTCCCCGATGCAGAAGCCCGCTGGCGCCTATACTCGTCCTGGGTG
AGTGAATGGAAGGGGGAAGGGAATGAAGAGGAAGAGGGCCGACGATAGCT
GCTGGGTTCCAGGAGTCGGTTACGCTCTTACCCACTCTCGTCAAGAAGAA
CACGAAGAGAAAGCAAGAAGGAGTGCAAGAAGGGAAGGGTGGAGAAGGGG
CGGGGCGGGGACCTCGCTCCGACAGCCTTATCAAATTTCAATGTGCAAGC
CCGCTTTCCATGCCTTCCCCCTTTAATCCCCCCTCTTCTACGTTATACAC
CCATCAGATACTTGCGCACTCTGGGTGCTTACGAGAATGTTAAGAAAAGC
TATGAATACTGCAGGGGGTTTATGGGAGTGCGTTCCCTTGCACCTGTAGT
GGAATGGGTGGTGGAGGGCACGCTTTCCAGAGTCCCGGTAGTGAAGAATC
TCAAAGACGACGAGGAGACCGCGGACGGCTACCCGATGCTGCACGGGCTC
GACAACCGCTTGGCCGAGCTGTTGACACATTTCGACGATTACGTGCGTGT
GTGTGTGTGTGCGTGTGTGTGTGTTTGTGTGTGTATAAATGTGTGCGTGT
ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTT
GTGTGTGTTTTTCGGGGGATGGGTCACACTGAGGTCTGTCAGGTGCTGGC
ATGTCAAGGCTAACATTCTTCCCCCCCCTCCCTCCCTTATTTGCTTACTT
CAGGTGGACGTGAGCGTGGCCGACCCCACAAGCATTCAAGGCCGCGCTCT
GCGGGTTGTCACACATACGGTTCATGCGCTGGCAGGCTACACTCCCTTTG
TCGGTGGTCAGATCCGCCGGCTTATGATTGAGATAGTAAGTGGAGCGCAT
CATACTCCTTTCTCGTGGGGTCCCTCCTCTTCATAATTTCCTTCGCCGTC
CAGTCCACGTGTCTCCTGGACTATGTGCCTGACCTTTTCATATGACCATA
TTCTTCTGGCGCAGGATCCCGATCACATGTCCCGCGTCCCTCGGCTAATG
GACCGCCCGGCGCTGGACACCACTTCTGTGGATGTGGGGAAGTGCGGGTA
TGAGCATGACCGGGGCGAGCCGGAGGGGCGCGGGTCGATTGATGGGGAGA
CGGACGACGTGAGCGTCATGACGGACGAGACGAGCGATGAGGTTGCGGAG
AGGCAAGGGAATAAAAAGACGAAGGTAAGCCCGCTTTGGGTCCGTTTCTG
GTATTTGCAAAAAGATATGACTAACTCGTATGACTAACTCACAGAAGCGA
CAATGCTCACTACCCCACATTCACCGATATCGAAGCGCAAGGACAAGCGT
TTCCTGCAGAATATGGGCAAGGGTATAAAAAAGGTCATGAATTATCCCCG
GACGCCGGTGCACGAGCTTCCACCCGATATCCTCAGTAGTAGGAAAGACA
GCCCCAGCCCCAGCATTGGCACCGAGGAGGCCGTCGCCGCTACGCCCTCT
TCCGTTATTAGCAGCTCCGGTGGCGTTTCATCCACCTCCTCCACTTCCTC
CGGCCTTTCTATGCGGAGCACGTCGTCGCGCAAGTTCTTTGGCTCCGGAA
GCAAGAAGAGCATCGATTCGCCGGTCGCGGCCTCCACCCCTTCTTCTTAA
GTGAATGTGGAGGAGCTGAACGTGCGTTGTCTTTATGCGTATGTGCGCCT
TGCGTCAATTTTGGGAAAGAGAGAGGAGAAGGATAGGACATACGGTTGAG
AGAAAGGAACTCCCGGTCGTCCACGTTTTGTTTTCGTCATTTTTGGCTCT
GTAAAGAAAAAGGGGATTTAAAGAAACGGGGCAGTTGCGTTGAGAGGCAA
GAGAGGAGCAAAAATAGTGAATGGCAAAAAATGGGTTGAATTTGCTGCTG
AACACAGAAAGGACACCAAAGAAGCAAAGAAGCTAGCGTGGGGGAGGAA
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Coding sequence (CDS) from alignment at chr2:849784..852182-

>NO02G03160.1 ID=NO02G03160.1|Name=NO02G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr2:849784..852182- (Nannochloropsis oceanica)
ATGGTTATGCTGTTGCGTGCCAAAGGCATGGGGGCGGTTTTGAATAGAGA
GAAGGAACAAAATTCCTGGGCTACCTTGTGCCTTGTACAAAACCATTTCA
TGCCGCACCGACTCCTCTCTCGAGAACCCCTCTCAACTGATAATCTATCT
CACTACGCATATACAGCAAAGATGTCCCCGATGCAGAAGCCCGCTGGCGC
CTATACTCGTCCTGGATACTTGCGCACTCTGGGTGCTTACGAGAATGTTA
AGAAAAGCTATGAATACTGCAGGGGGTTTATGGGAGTGCGTTCCCTTGCA
CCTGTAGTGGAATGGGTGGTGGAGGGCACGCTTTCCAGAGTCCCGGTAGT
GAAGAATCTCAAAGACGACGAGGAGACCGCGGACGGCTACCCGATGCTGC
ACGGGCTCGACAACCGCTTGGCCGAGCTGTTGACACATTTCGACGATTAC
GTGGACGTGAGCGTGGCCGACCCCACAAGCATTCAAGGCCGCGCTCTGCG
GGTTGTCACACATACGGTTCATGCGCTGGCAGGCTACACTCCCTTTGTCG
GTGGTCAGATCCGCCGGCTTATGATTGAGATAGATCCCGATCACATGTCC
CGCGTCCCTCGGCTAATGGACCGCCCGGCGCTGGACACCACTTCTGTGGA
TGTGGGGAAGTGCGGGTATGAGCATGACCGGGGCGAGCCGGAGGGGCGCG
GGTCGATTGATGGGGAGACGGACGACGTGAGCGTCATGACGGACGAGACG
AGCGATGAGGTTGCGGAGAGGCAAGGGAATAAAAAGACGAAGCGCAAGGA
CAAGCGTTTCCTGCAGAATATGGGCAAGGGTATAAAAAAGGTCATGAATT
ATCCCCGGACGCCGGTGCACGAGCTTCCACCCGATATCCTCAGTAGTAGG
AAAGACAGCCCCAGCCCCAGCATTGGCACCGAGGAGGCCGTCGCCGCTAC
GCCCTCTTCCGTTATTAGCAGCTCCGGTGGCGTTTCATCCACCTCCTCCA
CTTCCTCCGGCCTTTCTATGCGGAGCACGTCGTCGCGCAAGTTCTTTGGC
TCCGGAAGCAAGAAGAGCATCGATTCGCCGGTCGCGGCCTCCACCCCTTC
TTCTTAA
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Synonyms
Publications